Kin-Recognition and Mhc-Discrimination in African Clawed Frog (Xenopus Laevis) Tadpoles
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Dispersal, Philopatry, and the Role of Fissionfusion Dynamics In
MARINE MAMMAL SCIENCE, **(*): ***–*** (*** 2012) C 2012 by the Society for Marine Mammalogy DOI: 10.1111/j.1748-7692.2011.00559.x Dispersal, philopatry, and the role of fission-fusion dynamics in bottlenose dolphins YI-JIUN JEAN TSAI and JANET MANN,1 Reiss Science Building, Rm 406, Department of Biology, Georgetown University, Washington, DC 20057, U.S.A. ABSTRACT In this quantitative study of locational and social dispersal at the individual level, we show that bottlenose dolphins (Tursiops sp.) continued to use their na- tal home ranges well into adulthood. Despite substantial home range overlap, mother–offspring associations decreased after weaning, particularly for sons. These data provide strong evidence for bisexual locational philopatry and mother–son avoidance in bottlenose dolphins. While bisexual locational philopatry offers the benefits of familiar social networks and foraging habitats, the costs of philopatry may be mitigated by reduced mother–offspring association, in which the risk of mother–daughter resource competition and mother–son mating is reduced. Our study highlights the advantages of high fission–fusion dynamics and longitudinal studies, and emphasizes the need for clarity when describing dispersal in this and other species. Key words: bottlenose dolphin, Tursiops sp., association, juvenile, philopatry, locational dispersal, mother-offspring, ranging, site fidelity, social dispersal. Dispersal is a key life history process that affects population demography, spatial distribution, and genetic structure, as well as individual -
Disease and Clinical Signs Poster
African Clawed Frog Xenopus laevis Diseases and Clinical Signs in Photographs Therese Jones-Green University Biomedical Services Abstract Reported clinical signs associated with ill health and Clinical signs found between 2016 to 2018 Many diseases of Xenopus laevis frogs have been described in the • Opened in 2005, the biofacility can hold up to 900 female and 240 disease Clinical signs found between 2016 to 2018 male frogs in a Marine Biotech (now serviced by MBK Installations Ltd.) • 80 recirculating aquatic system. • Buoyancy problems 70 bridge this gap using photographs taken of frogs with clinical signs. The system monitors parameters such as: temperature, pH, • • Changes in activity e.g. lethargy or easily startled. My aims are: conductivity, and Total Gas Pressure. 60 • Unusual amount of skin shedding. 2018 • To share my experiences, via images, to help improve the welfare and • Frogs are maintained on mains fed water with a 20% water exchange. 50 ases • Weight loss, or failure to feed correctly. c husbandry of this species. • 2017 • Coelomic (body cavity) distention. 40 • To stimulate a dialogue which results in further sharing of ideas and 2016 Whole body bloat. 30 information. • Frogs are held under a 12 hour light/dark cycle. • Number of • Each tank has a PVC enrichment tube (30cm x 10cm), with smoothed • Fungal strands/tufts. 20 Introduction cut edges. • Sores or tremors at extremities (forearms and toes). 10 Between January 2016 and October 2018, cases of ill health and disease • Frogs are fed three times a week with a commercial trout pellet. • Redness or red spots. 0 Oedema Red leg Red leg (bad Red leg Gas bubble Sores on forearm Opaque cornea Skeletal Growth (cartilage Scar Cabletie Missing claws Eggbound in a colony of Xenopus laevis frogs housed by the University Biological hormone) (nematodes) disease deformity under skin) • The focus of the research undertaken in the biofacility is embryonic and • Excessive slime/mucous production or not enough (dry dull skin). -
Table S1. Nakharuthai and Srisapoome (2020)
Primer name Nucleotide sequence (5’→3’) Purpose CXC-1F New TGAACCCTGAGCTGAAGGCCGTGA Real-time PCR CXC-1R New TGAAGGTCTGATGAGTTTGTCGTC Real-time PCR CXC-1R CCTTCAGCTCAGGGTTCAAGC Genomic PCR CXC-2F New GCTTGAACCCCGAGCTGAAAAACG Real-time PCR CXC-2R New GTTCAGAGGTCGTATGAGGTGCTT Real-time PCR CXC-2F CAAGCAGGACAACAGTGTCTGTGT 3’RACE CXC-2AR GTTGCATGATTTGGATGCTGGGTAG 5’RACE CXC-1FSB AACATATGTCTCCCAGGCCCAACTCAAAC Southern blot CXC-1RSB CTCGAGTTATTTTGCACTGATGTGCAA Southern blot CXC1Exon1F CAAAGTGTTTCTGCTCCTGG Genomic PCR On-CXC1FOverEx CATATGCAACTCAAACAAGCAGGACAACAGT Overexpression On-CXC1ROverEx CTCGAGTTTTGCACTGATGTGCAATTTCAA Overexpression On-CXC2FOverEx CATATGCAACTCAAACAAGCAGGACAACAGT Overexpression On-CXC2ROverEx CTCGAGCATGGCAGCTGTGGAGGGTTCCAC Overexpression β-actinrealtimeF ACAGGATGCAGAAGGAGATCACAG Real-time PCR β-actinrealtimeR GTACTCCTGCTTGCTGATCCACAT Real-time PCR M13F AAAACGACGGCCAG Nucleotide sequencing M13R AACAGCTATGACCATG Nucleotide sequencing UPM-long (0.4 µM) CTAATACGACTCACTATAGGGCAAGCAGTGGTATCAACGCAGAGT RACE PCR UPM-short (2 µM) CTAATAC GACTCACTATA GGGC RACE PCR Table S1. Nakharuthai and Srisapoome (2020) On-CXC1 Nucleotide (%) Amino acid (%) On-CXC2 Nucleotide (%) Amino acid (%) Versus identity identity similarity Versus identity identity Similarity Teleost fish 1. Rock bream, Oplegnathus fasciatus (AB703273) 64.5 49.1 68.1 O. fasciatus 70.7 57.7 75.4 2. Mandarin fish, Siniperca chuatsi (AAY79282) 63.2 48.1 68.9 S. chuatsi 70.5 54.0 78.8 3. Atlantic halibut, Hippoglossus hippoglossus (ACY54778) 52.0 39.3 51.1 H. hippoglossus 64.5 46.3 63.9 4. Common carp IL-8, Cyprinus carpio (ABE47600) 44.9 19.1 34.1 C. carpio 49.4 21.9 42.6 5. Rainbow trout IL-8, Oncorhynchus mykiss (CAC33585) 44.0 21.3 36.3 O. mykiss 47.3 23.7 44.4 6. Japanese flounder IL-8, Paralichthys olivaceus (AAL05442) 48.4 25.4 45.9 P. -
Molecular Phylogeny and Phylogeography of Reed Warblers and Allies (Aves: Acrocephalidae)
Dissertation submitted to the Combined Faculties for the Natural Sciences and for Mathematics of the Ruperto-Carola University of Heidelberg, Germany for the degree of Doctor of Natural Sciences presented by Tayebeh Arbabi Born in Mashhad, Iran Oral examination: 26 June 2014 Molecular Phylogeny and Phylogeography of Reed Warblers and Allies (Aves: Acrocephalidae) Referees: Prof. Dr. Michael Wink Prof. Dr. Marcus Koch i Table of contents Zusammenfassung..................................................................................................................... v Summary .................................................................................................................................. vi Abbreviations ......................................................................................................................... vii Publications ........................................................................................................................... viii 1 Introduction ............................................................................................................................ 1 1.1 General introduction ......................................................................................................... 1 1.1.1 Avian taxonomy ......................................................................................................... 1 1.1.2 Phylogeny and phylogeography ................................................................................. 2 1.1.3 Molecular markers .................................................................................................... -
University of Groningen Sociable Schedules Helm, Barbara
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Groningen University of Groningen Sociable schedules Helm, Barbara; Piersma, Theunis; Van der Jeugd, Henk Published in: Animal Behavior DOI: 10.1016/j.anbehav.2005.12.007 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2006 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Helm, B., Piersma, T., & Van der Jeugd, H. (2006). Sociable schedules: interplay between avian seasonal and social behaviour. Animal Behavior, 72(2), 245-262. https://doi.org/10.1016/j.anbehav.2005.12.007 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 12-11-2019 ANIMAL BEHAVIOUR, 2006, 72, 245e262 doi:10.1016/j.anbehav.2005.12.007 REVIEWS Sociable schedules: interplay between avian seasonal and social behaviour BARBARA HELM*,THEUNISPIERSMA†‡ & HENK VAN DER JEUGD†§ *Max Planck Institute for Ornithology yAnimal Ecology Group, Centre for Ecological and Evolutionary Studies zDepartment of Ecology and Evolution, Royal Netherlands Institute for Sea Research (NIOZ) xSOVON Dutch Centre for Field Ornithology (Received 26 June 2004; initial acceptance 15 September 2004; final acceptance 6 December 2005; published online 21 June 2006; MS. -
Evolutionary and Conservation Genetics of the Seychelles Warbler ( Acrocephalus Sechellensis )
Evolutionary and conservation genetics of the Seychelles warbler ( Acrocephalus sechellensis ) David John Wright A thesis submitted for the degree of Doctor of Philosophy School of Biological Sciences University of East Anglia, UK May 2014 © This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. This thesis is dedicated to Laura, my wife and partner-in-crime, for the endless supply of love, support, tea and cake. ii Abstract In this thesis, I investigated how evolutionary forces and conservation action interact to shape neutral and adaptive genetic variation within and among populations. To accomplish this, I studied an island species, the Seychelles warbler (Acrocephalus sechellensis ), with microsatellite markers and major histocompatibility complex (MHC) genes as measures of neutral and adaptive variation respectively. First, I used museum DNA and historical records to reveal a recent bottleneck that provides context for the contemporary genetic variation observed in this species. I then determined the impact of four translocations on genetic diversity over two decades. I found that diversity does not differ significantly between islands but the use of smaller founder sizes in two translocations has caused population divergence. These results indicate that stochastic genetic capture is important in translocations and that future assisted gene flow between populations may be necessary. As a tool for conservation practitioners, I wrote a technical report of the most recent translocation - to Frégate Island - detailing practicalities and outcomes to help inform future translocation policy. -
Breeding Site Fidelity in Southern Elephant Seals of the Falkland Islands
Filippo Galimberti 1 and Simona Sanvito 1,2 1 Elephant Seal Research Group, Sea Lion Island, Falkland Islands 2 Dept. of Biology, Memorial University of Newfoundland, St. John’s NF A1B 3X9, Canada ESRG technical report no. 3 Breeding site fidelity in southern elephant seals of the Falkland Islands Milano, 25th April 2000 © Elephant Seal Research Group – 2000 No part of this report can be cited without written permission from the authors. Address for correspondence: Dr. Filippo Galimberti – Via Buonarroti 35 – 20145 Milano – Italy Phone +39 02 4980504 – Fax +39 02 48008145 – Email [email protected] ABSTRACT Breeding site fidelity, i.e., the tendency to return to the same breeding site for consecutive breeding attempts, is an important component of mammal life history strategies, and seems almost ubiquitous in Pinnipedia species, at least for land breeding ones. Site fidelity may entail significant somatic benefits and costs, and, if coupled with return for first breeding attempt to birth site, may produce a genetic sub-structuring of populations. We present data on female and male site fidelity, together with preliminary information on female phylopatry, of southern elephant seals (Mirounga leonina) of Sea Lion Island, the main breeding site of the species in the Falkland Islands. We found a high level of site fidelity at small scale (hundred of metres) in both sexes, although higher in females, even when considering up to five consecutive breeding seasons of the same individual. We discuss the behavioural and genetic implications of site fidelity, emphasizing that it may affect mating tactics, breeding success, and genetic sub-structuring of local populations. -
Author's Personal Copy
Author's personal copy Provided for non-commercial research and educational use. Not for reproduction, distribution or commercial use. This article was originally published in Encyclopedia of Animal Behavior, published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non-commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who you know, and providing a copy to your institution's administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution’s website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier’s permissions site at: https://www.elsevier.com/about/our-business/policies/copyright/permissions From Shen, S-F., Rubenstein, D.R. (2019). Environmental Uncertainty and Social Behavior. In: Choe, J.C. (Ed.), Encyclopedia of Animal Behavior, (2nd ed.). vol. 4, pp. 807–815. Elsevier, Academic Press. ISBN: 9780128132517 Copyright © 2019 Elsevier Ltd. All rights reserved. Academic Press Author's personal copy Environmental Uncertainty and Social Behavior Sheng-Feng Shen, Biodiversity Research Center, Academia Sinica, Taipei, Taiwan Dustin R Rubenstein, Columbia University, New York, NY, United States © 2019 Elsevier Ltd. All rights reserved. Glossary Cooperative breeding A form of social system in which more than two individuals care for your young. In most cooperatively breeding systems, some mature offspring delay dispersal, remain in their natal social groups, and often “help” raise the their parents’ offspring (their siblings) from subsequent breeding attempts. -
Helical Insertion of Peptidoglycan Produces Chiral Ordering of the Bacterial Cell Wall
Helical insertion of peptidoglycan produces PNAS PLUS chiral ordering of the bacterial cell wall Siyuan Wanga,b, Leon Furchtgottc,d, Kerwyn Casey Huangd,1, and Joshua W. Shaevitza,e,1 aLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544; bDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544; cBiophysics Program, Harvard University, Cambridge, MA 02138; dDepartment of Bioengineering, Stanford University, Stanford, CA 94305; and eDepartment of Physics, Princeton University, Princeton, NJ 08854 AUTHOR SUMMARY Cells from all kingdoms of wall growth to demonstrate life face the task of that patterning of cell-wall constructing a specific, synthesis by left-handed mechanically robust three- MreB polymers leads to a dimensional (3D) cell shape right-handed chiral from molecular-scale organization of the glycan components. For many strands. This organization bacteria, maintaining a rigid, produces a left-handed rod-like shape facilitates a twisting of the cell body diverse range of behaviors during elongational growth. including swimming motility, We then confirm the detection of chemical existence of right-handed gradients, and nutrient access Fig. P1. Helical insertion of material into the bacterial cell wall (green) glycan organization in E. coli during elongational growth, guided by the protein MreB (yellow), leads and waste evacuation in by osmotically shocking biofilms. The static shape of to an emergent chiral order in the cell-wall network and twisting of the cell that can be visualized using surface-bound beads (red). surface-labeled cells and a bacterial cell is usually directly measuring the defined by the cell wall, a difference in stiffness macromolecular polymer network composed of glycan strands between the longitudinal and transverse directions. -
High Abundance of Invasive African Clawed Frog Xenopus Laevis in Chile: Challenges for Their Control and Updated Invasive Distribution
Management of Biological Invasions (2019) Volume 10, Issue 2: 377–388 CORRECTED PROOF Research Article High abundance of invasive African clawed frog Xenopus laevis in Chile: challenges for their control and updated invasive distribution Marta Mora1, Daniel J. Pons2,3, Alexandra Peñafiel-Ricaurte2, Mario Alvarado-Rybak2, Saulo Lebuy2 and Claudio Soto-Azat2,* 1Vida Nativa NGO, Santiago, Chile 2Centro de Investigación para la Sustentabilidad & Programa de Doctorado en Medicina de la Conservación, Facultad de Ciencias de la Vida, Universidad Andres Bello, Republica 440, Santiago, Chile 3Facultad de Ciencias Exactas, Departamento de Matemáticas, Universidad Andres Bello, Santiago, Republica 470, Santiago, Chile Author e-mails: [email protected] (CSA), [email protected] (MM), [email protected] (DJP), [email protected] (APR), [email protected] (MAR), [email protected] (SL) *Corresponding author Citation: Mora M, Pons DJ, Peñafiel- Ricaurte A, Alvarado-Rybak M, Lebuy S, Abstract Soto-Azat C (2019) High abundance of invasive African clawed frog Xenopus Invasive African clawed frog Xenopus laevis (Daudin, 1802) are considered a major laevis in Chile: challenges for their control threat to aquatic environments. Beginning in the early 1970s, invasive populations and updated invasive distribution. have now been established throughout much of central Chile. Between September Management of Biological Invasions 10(2): and December 2015, we studied a population of X. laevis from a small pond in 377–388, https://doi.org/10.3391/mbi.2019. 10.2.11 Viña del Mar, where we estimated the population size and evaluated the use of hand nets as a method of control. First, by means of a non-linear extrapolation Received: 26 October 2018 model using the data from a single capture session of 200 min, a population size of Accepted: 7 March 2019 1,182 post-metamorphic frogs (range: 1,168–1,195 [quadratic error]) and a density Published: 16 May 2019 of 13.7 frogs/m2 (range: 13.6–13.9) of surface water were estimated. -
Philopatry and Migration of Pacific White Sharks
Proc. R. Soc. B doi:10.1098/rspb.2009.1155 Published online Philopatry and migration of Pacific white sharks Salvador J. Jorgensen1,*, Carol A. Reeb1, Taylor K. Chapple2, Scot Anderson3, Christopher Perle1, Sean R. Van Sommeran4, Callaghan Fritz-Cope4, Adam C. Brown5, A. Peter Klimley2 and Barbara A. Block1 1Department of Biology, Stanford University, Pacific Grove, CA 93950, USA 2Department of Wildlife, Fish and Conservation Biology, University of California, Davis, CA 95616, USA 3Point Reyes National Seashore, P. O. Box 390, Inverness, California 94937, USA 4Pelagic Shark Research Foundation, Santa Cruz Yacht Harbor, Santa Cruz, CA 95062, USA 5PRBO Conservation Science, 3820 Cypress Drive #11, Petaluma, CA 94954, USA Advances in electronic tagging and genetic research are making it possible to discern population structure for pelagic marine predators once thought to be panmictic. However, reconciling migration patterns and gene flow to define the resolution of discrete population management units remains a major challenge, and a vital conservation priority for threatened species such as oceanic sharks. Many such species have been flagged for international protection, yet effective population assessments and management actions are hindered by lack of knowledge about the geographical extent and size of distinct populations. Combin- ing satellite tagging, passive acoustic monitoring and genetics, we reveal how eastern Pacific white sharks (Carcharodon carcharias) adhere to a highly predictable migratory cycle. Individuals persistently return to the same network of coastal hotspots following distant oceanic migrations and comprise a population genetically distinct from previously identified phylogenetic clades. We hypothesize that this strong homing behaviour has maintained the separation of a northeastern Pacific population following a historical introduction from Australia/New Zealand migrants during the Late Pleistocene. -
Dispersal and Gene Flow in a Butterfly with Home Range Behavior: Heliconius Erato (Lepidoptera: Nymphalidae)
Oecologia (Berlin) (1986) 68:210-217 Oecologia Springer-Verlag1986 Dispersal and gene flow in a butterfly with home range behavior: Heliconius erato (Lepidoptera: Nymphalidae) James Mallet Department of Zoology, University of Texas, Austin, TX 78712, USA Summary. Heliconius butterflies have been found to have Endler (1977) and Barton and Hewitt (1981) used measures low rates of dispersal in previous mark-recapture studies, of dispersal to analyse processes in clines and hybrid zones and this lack of movement is due home-range behavior. but came to differing conclusions as to whether divergence An experiment on Heliconius erato was designed to investi- of the hybridizing taxa occurred during a past period of gate movement from the site of pupal eclosion. It was found isolation. Many of these controversies can be traced to inad- that most of the movement occurs before the first capture equate knowledge of natural gene flow. of an individual in a mark-recapture study. After incorpor- Although dispersal and gene flow have never previously ating this early movement, the dispersal parameter, a, is been measured in Heliconius, mark-recapture studies have estimated to be at least 296 m (+_ 30 m jackknifed standard shown low rates of movement. Individuals return daily to error), and the "neighborhood population size", N, is sites for adult and larval hostplants (Turner 1971 a; Ehrlich about 50-150 individuals. These estimates of a and N are and Gilbert 1973; Cook et al. 1976; Mallet and Jackson more than 2 and 5 times larger, respectively, than estimates 1980), and nightly to sites of gregarious roosting (Turner based on standard mark-recapture data, though they are 1971 a; Brown 1981 ; Waller and Gilbert 1982).