Aquaculture Management Guide a Manual for the Identification and Management of Aquaculture Production Hazards
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A Guide to Culturing Parasites, Establishing Infections and Assessing Immune Responses in the Three-Spined Stickleback
ARTICLE IN PRESS Hook, Line and Infection: A Guide to Culturing Parasites, Establishing Infections and Assessing Immune Responses in the Three-Spined Stickleback Alexander Stewart*, Joseph Jacksonx, Iain Barber{, Christophe Eizaguirrejj, Rachel Paterson*, Pieter van West#, Chris Williams** and Joanne Cable*,1 *Cardiff University, Cardiff, United Kingdom x University of Salford, Salford, United Kingdom { University of Leicester, Leicester, United Kingdom jj Queen Mary University of London, London, United Kingdom #Institute of Medical Sciences, Aberdeen, United Kingdom **National Fisheries Service, Cambridgeshire, United Kingdom 1Corresponding author: E-mail: [email protected] Contents 1. Introduction 3 2. Stickleback Husbandry 7 2.1 Ethics 7 2.2 Collection 7 2.3 Maintenance 9 2.4 Breeding sticklebacks in vivo and in vitro 10 2.5 Hatchery 15 3. Common Stickleback Parasite Cultures 16 3.1 Argulus foliaceus 17 3.1.1 Introduction 17 3.1.2 Source, culture and infection 18 3.1.3 Immunology 22 3.2 Camallanus lacustris 22 3.2.1 Introduction 22 3.2.2 Source, culture and infection 23 3.2.3 Immunology 25 3.3 Diplostomum Species 26 3.3.1 Introduction 26 3.3.2 Source, culture and infection 27 3.3.3 Immunology 28 Advances in Parasitology, Volume 98 ISSN 0065-308X © 2017 Elsevier Ltd. http://dx.doi.org/10.1016/bs.apar.2017.07.001 All rights reserved. 1 j ARTICLE IN PRESS 2 Alexander Stewart et al. 3.4 Glugea anomala 30 3.4.1 Introduction 30 3.4.2 Source, culture and infection 30 3.4.3 Immunology 31 3.5 Gyrodactylus Species 31 3.5.1 Introduction 31 3.5.2 Source, culture and infection 32 3.5.3 Immunology 34 3.6 Saprolegnia parasitica 35 3.6.1 Introduction 35 3.6.2 Source, culture and infection 36 3.6.3 Immunology 37 3.7 Schistocephalus solidus 38 3.7.1 Introduction 38 3.7.2 Source, culture and infection 39 3.7.3 Immunology 43 4. -
Twenty Thousand Parasites Under The
ADVERTIMENT. Lʼaccés als continguts dʼaquesta tesi queda condicionat a lʼacceptació de les condicions dʼús establertes per la següent llicència Creative Commons: http://cat.creativecommons.org/?page_id=184 ADVERTENCIA. El acceso a los contenidos de esta tesis queda condicionado a la aceptación de las condiciones de uso establecidas por la siguiente licencia Creative Commons: http://es.creativecommons.org/blog/licencias/ WARNING. The access to the contents of this doctoral thesis it is limited to the acceptance of the use conditions set by the following Creative Commons license: https://creativecommons.org/licenses/?lang=en Departament de Biologia Animal, Biologia Vegetal i Ecologia Tesis Doctoral Twenty thousand parasites under the sea: a multidisciplinary approach to parasite communities of deep-dwelling fishes from the slopes of the Balearic Sea (NW Mediterranean) Tesis doctoral presentada por Sara Maria Dallarés Villar para optar al título de Doctora en Acuicultura bajo la dirección de la Dra. Maite Carrassón López de Letona, del Dr. Francesc Padrós Bover y de la Dra. Montserrat Solé Rovira. La presente tesis se ha inscrito en el programa de doctorado en Acuicultura, con mención de calidad, de la Universitat Autònoma de Barcelona. Los directores Maite Carrassón Francesc Padrós Montserrat Solé López de Letona Bover Rovira Universitat Autònoma de Universitat Autònoma de Institut de Ciències Barcelona Barcelona del Mar (CSIC) La tutora La doctoranda Maite Carrassón Sara Maria López de Letona Dallarés Villar Universitat Autònoma de Barcelona Bellaterra, diciembre de 2016 ACKNOWLEDGEMENTS Cuando miro atrás, al comienzo de esta tesis, me doy cuenta de cuán enriquecedora e importante ha sido para mí esta etapa, a todos los niveles. -
Sea Squirt Symbionts! Or What I Did on My Summer Vacation… Leah Blasiak 2011 Microbial Diversity Course
Sea Squirt Symbionts! Or what I did on my summer vacation… Leah Blasiak 2011 Microbial Diversity Course Abstract Microbial symbionts of tunicates (sea squirts) have been recognized for their capacity to produce novel bioactive compounds. However, little is known about most tunicate-associated microbial communities, even in the embryology model organism Ciona intestinalis. In this project I explored 3 local tunicate species (Ciona intestinalis, Molgula manhattensis, and Didemnum vexillum) to identify potential symbiotic bacteria. Tunicate-specific bacterial communities were observed for all three species and their tissue specific location was determined by CARD-FISH. Introduction Tunicates and other marine invertebrates are prolific sources of novel natural products for drug discovery (reviewed in Blunt, 2010). Many of these compounds are biosynthesized by a microbial symbiont of the animal, rather than produced by the animal itself (Schmidt, 2010). For example, the anti-cancer drug patellamide, originally isolated from the colonial ascidian Lissoclinum patella, is now known to be produced by an obligate cyanobacterial symbiont, Prochloron didemni (Schmidt, 2005). Research on such microbial symbionts has focused on their potential for overcoming the “supply problem.” Chemical synthesis of natural products is often challenging and expensive, and isolation of sufficient quantities of drug for clinical trials from wild sources may be impossible or environmentally costly. Culture of the microbial symbiont or heterologous expression of the biosynthetic genes offers a relatively economical solution. Although the microbial origin of many tunicate compounds is now well established, relatively little is known about the extent of such symbiotic associations in tunicates and their biological function. Tunicates (or sea squirts) present an interesting system in which to study bacterial/eukaryotic symbiosis as they are deep-branching members of the Phylum Chordata (Passamaneck, 2005 and Buchsbaum, 1948). -
Proteome Analysis Reveals a Role of Rainbow Trout Lymphoid Organs During Yersinia Ruckeri Infection Process
www.nature.com/scientificreports Correction: Author Correction OPEN Proteome analysis reveals a role of rainbow trout lymphoid organs during Yersinia ruckeri infection Received: 14 February 2018 Accepted: 30 August 2018 process Published online: 18 September 2018 Gokhlesh Kumar 1, Karin Hummel2, Katharina Noebauer2, Timothy J. Welch3, Ebrahim Razzazi-Fazeli2 & Mansour El-Matbouli1 Yersinia ruckeri is the causative agent of enteric redmouth disease in salmonids. Head kidney and spleen are major lymphoid organs of the teleost fsh where antigen presentation and immune defense against microbes take place. We investigated proteome alteration in head kidney and spleen of the rainbow trout following Y. ruckeri strains infection. Organs were analyzed after 3, 9 and 28 days post exposure with a shotgun proteomic approach. GO annotation and protein-protein interaction were predicted using bioinformatic tools. Thirty four proteins from head kidney and 85 proteins from spleen were found to be diferentially expressed in rainbow trout during the Y. ruckeri infection process. These included lysosomal, antioxidant, metalloproteinase, cytoskeleton, tetraspanin, cathepsin B and c-type lectin receptor proteins. The fndings of this study regarding the immune response at the protein level ofer new insight into the systemic response to Y. ruckeri infection in rainbow trout. This proteomic data facilitate a better understanding of host-pathogen interactions and response of fsh against Y. ruckeri biotype 1 and 2 strains. Protein-protein interaction analysis predicts carbon metabolism, ribosome and phagosome pathways in spleen of infected fsh, which might be useful in understanding biological processes and further studies in the direction of pathways. Enteric redmouth disease (ERM) causes signifcant economic losses in salmonids worldwide. -
0041085-15082018101610.Pdf
Cronfa - Swansea University Open Access Repository _____________________________________________________________ This is an author produced version of a paper published in: The Journal of Antibiotics Cronfa URL for this paper: http://cronfa.swan.ac.uk/Record/cronfa41085 _____________________________________________________________ Paper: Zhang, B., Tang, S., Chen, X., Zhang, G., Zhang, W., Chen, T., Liu, G., Li, S., Dos Santos, L., et. al. (2018). Streptomyces qaidamensis sp. nov., isolated from sand in the Qaidam Basin, China. The Journal of Antibiotics http://dx.doi.org/10.1038/s41429-018-0080-9 _____________________________________________________________ This item is brought to you by Swansea University. Any person downloading material is agreeing to abide by the terms of the repository licence. Copies of full text items may be used or reproduced in any format or medium, without prior permission for personal research or study, educational or non-commercial purposes only. The copyright for any work remains with the original author unless otherwise specified. The full-text must not be sold in any format or medium without the formal permission of the copyright holder. Permission for multiple reproductions should be obtained from the original author. Authors are personally responsible for adhering to copyright and publisher restrictions when uploading content to the repository. http://www.swansea.ac.uk/library/researchsupport/ris-support/ Streptomyces qaidamensis sp. nov., isolated from sand in the Qaidam Basin, China Binglin Zhang1,2,3, Shukun Tang4, Ximing Chen1,3, Gaoseng Zhang1,3, Wei Zhang1,3, Tuo Chen2,3, Guangxiu Liu1,3, Shiweng Li3,5, Luciana Terra Dos Santos6, Helena Carla Castro6, Paul Facey7, Matthew Hitchings7 and Paul Dyson7 1 Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China. -
WMSDB - Worldwide Mollusc Species Data Base
WMSDB - Worldwide Mollusc Species Data Base Family: TURBINIDAE Author: Claudio Galli - [email protected] (updated 07/set/2015) Class: GASTROPODA --- Clade: VETIGASTROPODA-TROCHOIDEA ------ Family: TURBINIDAE Rafinesque, 1815 (Sea) - Alphabetic order - when first name is in bold the species has images Taxa=681, Genus=26, Subgenus=17, Species=203, Subspecies=23, Synonyms=411, Images=168 abyssorum , Bolma henica abyssorum M.M. Schepman, 1908 aculeata , Guildfordia aculeata S. Kosuge, 1979 aculeatus , Turbo aculeatus T. Allan, 1818 - syn of: Epitonium muricatum (A. Risso, 1826) acutangulus, Turbo acutangulus C. Linnaeus, 1758 acutus , Turbo acutus E. Donovan, 1804 - syn of: Turbonilla acuta (E. Donovan, 1804) aegyptius , Turbo aegyptius J.F. Gmelin, 1791 - syn of: Rubritrochus declivis (P. Forsskål in C. Niebuhr, 1775) aereus , Turbo aereus J. Adams, 1797 - syn of: Rissoa parva (E.M. Da Costa, 1778) aethiops , Turbo aethiops J.F. Gmelin, 1791 - syn of: Diloma aethiops (J.F. Gmelin, 1791) agonistes , Turbo agonistes W.H. Dall & W.H. Ochsner, 1928 - syn of: Turbo scitulus (W.H. Dall, 1919) albidus , Turbo albidus F. Kanmacher, 1798 - syn of: Graphis albida (F. Kanmacher, 1798) albocinctus , Turbo albocinctus J.H.F. Link, 1807 - syn of: Littorina saxatilis (A.G. Olivi, 1792) albofasciatus , Turbo albofasciatus L. Bozzetti, 1994 albofasciatus , Marmarostoma albofasciatus L. Bozzetti, 1994 - syn of: Turbo albofasciatus L. Bozzetti, 1994 albulus , Turbo albulus O. Fabricius, 1780 - syn of: Menestho albula (O. Fabricius, 1780) albus , Turbo albus J. Adams, 1797 - syn of: Rissoa parva (E.M. Da Costa, 1778) albus, Turbo albus T. Pennant, 1777 amabilis , Turbo amabilis H. Ozaki, 1954 - syn of: Bolma guttata (A. Adams, 1863) americanum , Lithopoma americanum (J.F. -
Phylum MOLLUSCA
285 MOLLUSCA: SOLENOGASTRES-POLYPLACOPHORA Phylum MOLLUSCA Class SOLENOGASTRES Family Lepidomeniidae NEMATOMENIA BANYULENSIS (Pruvot, 1891, p. 715, as Dondersia) Occasionally on Lafoea dumosa (R.A.T., S.P., E.J.A.): at 4 positions S.W. of Eddystone, 42-49 fm., on Lafoea dumosa (Crawshay, 1912, p. 368): Eddystone, 29 fm., 1920 (R.W.): 7, 3, 1 and 1 in 4 hauls N.E. of Eddystone, 1948 (V.F.) Breeding: gonads ripe in Aug. (R.A.T.) Family Neomeniidae NEOMENIA CARINATA Tullberg, 1875, p. 1 One specimen Rame-Eddystone Grounds, 29.12.49 (V.F.) Family Proneomeniidae PRONEOMENIA AGLAOPHENIAE Kovalevsky and Marion [Pruvot, 1891, p. 720] Common on Thecocarpus myriophyllum, generally coiled around the base of the stem of the hydroid (S.P., E.J.A.): at 4 positions S.W. of Eddystone, 43-49 fm. (Crawshay, 1912, p. 367): S. of Rame Head, 27 fm., 1920 (R.W.): N. of Eddystone, 29.3.33 (A.J.S.) Class POLYPLACOPHORA (=LORICATA) Family Lepidopleuridae LEPIDOPLEURUS ASELLUS (Gmelin) [Forbes and Hanley, 1849, II, p. 407, as Chiton; Matthews, 1953, p. 246] Abundant, 15-30 fm., especially on muddy gravel (S.P.): at 9 positions S.W. of Eddystone, 40-43 fm. (Crawshay, 1912, p. 368, as Craspedochilus onyx) SALCOMBE. Common in dredge material (Allen and Todd, 1900, p. 210) LEPIDOPLEURUS, CANCELLATUS (Sowerby) [Forbes and Hanley, 1849, II, p. 410, as Chiton; Matthews. 1953, p. 246] Wembury West Reef, three specimens at E.L.W.S.T. by J. Brady, 28.3.56 (G.M.S.) Family Lepidochitonidae TONICELLA RUBRA (L.) [Forbes and Hanley, 1849, II, p. -
Results of Cultivation of Japanese Kelp (Saccharina Japonica ) in Primorsky Krai, Russia
International Journal of Nutrition and Food Sciences 2016; 5(3): 145-159 http://www.sciencepublishinggroup.com/j/ijnfs doi: 10.11648/j.ijnfs.20160503.11 ISSN: 2327-2694 (Print); ISSN: 2327-2716 (Online) Results of Cultivation of Japanese Kelp (Saccharina japonica ) in Primorsky Krai, Russia Delik D. Gabaev, Serge M. Dimitriev Academy of Sciences, A. V. Zhirmunsky Institute of Marine Biology, Far Eastern Branch, Russian Email address: [email protected] (D. D. Gabaev) To cite this article: Delik D. Gabaev, Serge M. Dimitriev. Results of Cultivation of Japanese Kelp (Saccharina japonica ) in Primorsky Krai, Russia. International Journal of Nutrition and Food Sciences. Vol. 5, No. 3, 2016, pp. 145-159. doi: 10.11648/j.ijnfs.20160503.11 Received : January 14, 2016; Accepted : March 25, 2016; Published : April 12, 2016 Abstract: Animals and plants, living near human settlements in the three climatic zones, accumulate substances that allow them to resist extreme environmental factors. By consuming these plants and animals, people strengthen the immune system that also facilitates their existence in harsh conditions. Many of the world known species appreciated for their medicinal properties inhabit Primorsky Krai, which is located in three climatic zones. On land, these are plants of the family of Araliaceae, including the well-known ginseng; in the sea, the Japanese sea cucumber and brown algae, including the Japanese kelp Saccharina (=Laminaria) japonica . This publication provides the results of cultivation of commercially valuable Japanese kelp by several technologies at sea-based farms in Russia. Keywords: Three Climatic Zones, Health Food, Forced Cultivation, Japanese Kelp, Saccharina (=Laminaria) japonica which was edited by Emperor Daigo (897-930) in Japan at 1. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska. -
Inventory of Parasitic Copepods and Their Hosts in the Western Wadden Sea in 1968 and 2010
INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch NNIOZIOZ KKoninklijkoninklijk NNederlandsederlands IInstituutnstituut vvooroor ZZeeonderzoekeeonderzoek INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch Texel, April 2012 NIOZ Koninklijk Nederlands Instituut voor Zeeonderzoek Cover illustration The parasitic copepod Lernaeenicus sprattae (Sowerby, 1806) on its fish host, the sprat (Sprattus sprattus) Copyright by Hans Hillewaert, licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license; CC-BY-SA-3.0; Wikipedia Contents 1. Summary 6 2. Introduction 7 3. Methods 7 4. Results 8 5. Discussion 9 6. Acknowledgements 10 7. References 10 8. Appendices 12 1. Summary Ectoparasites, attaching mainly to the fins or gills, are a particularly conspicuous part of the parasite fauna of marine fishes. In particular the dominant copepods, have received much interest due to their effects on host populations. However, still little is known on the copepod fauna on fishes for many localities and their temporal stability as long-term observations are largely absent. The aim of this project was two-fold: 1) to deliver a current inventory of ectoparasitic copepods in fishes in the southern Wadden Sea around Texel and 2) to compare the current parasitic copepod fauna with the one from 1968 in the same area, using data published in an internal NIOZ report and additional unpublished original notes. In total, 47 parasite species have been recorded on 52 fish species in the southern Wadden Sea to date. The two copepod species, where quantitative comparisons between 1968 and 2010 were possible for their host, the European flounder (Platichthys flesus), showed different trends: Whereas Acanthochondria cornuta seems not to have altered its infection rate or per host abundance between years, Lepeophtheirus pectoralis has shifted towards infection of smaller hosts, as well as to a stronger increase of per-host abundance with increasing host length. -
Population Ecology and Epidemiology of Sea Lice in Canadian Waters Sonja M
The University of Maine DigitalCommons@UMaine Maine Sea Grant Publications Maine Sea Grant 2-2015 Population Ecology and Epidemiology of Sea Lice in Canadian Waters Sonja M. Saksida British Columbia Centre for Aquatic Health Sciences Ian Bricknell University of Maine, [email protected] Shawn M. C. Robinson Fisheries and Oceans Canada, St. Andrews Biological Station Simon Jones Fisheries and Oceans Canada, Pacific ioB logical Station Follow this and additional works at: https://digitalcommons.library.umaine.edu/seagrant_pub Part of the Aquaculture and Fisheries Commons, and the Population Biology Commons Repository Citation Saksida, Sonja M.; Bricknell, Ian; Robinson, Shawn M. C.; and Jones, Simon, "Population Ecology and Epidemiology of Sea Lice in Canadian Waters" (2015). Maine Sea Grant Publications. 75. https://digitalcommons.library.umaine.edu/seagrant_pub/75 This Report is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Maine Sea Grant Publications by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. Canadian Science Advisory Secretariat (CSAS) Research Document 2015/004 National Capital Region Population ecology and epidemiology of sea lice in Canadian waters S. Saksida1, I. Bricknell2, S. Robinson3 and S. Jones4 1 British Columbia Centre for Aquatic Health Sciences 871A Island Highway, Campbell River, BC V9W 2C2 2 School of Marine Sciences, University of Maine Orono, ME 04469 3 Fisheries and Oceans Canada, St. Andrews Biological Station 531 Brandy Cove Road, St. Andrews, NB E5B 2L9 4 Fisheries and Oceans Canada, Pacific Biological Station 3190 Hammond Bay Rd., Nanaimo, BC V9T 6N7 February 2015 Foreword This series documents the scientific basis for the evaluation of aquatic resources and ecosystems in Canada. -
Group of Microorganisms at the Animal-Fungal Boundary
16 Aug 2002 13:56 AR AR168-MI56-14.tex AR168-MI56-14.SGM LaTeX2e(2002/01/18) P1: GJC 10.1146/annurev.micro.56.012302.160950 Annu. Rev. Microbiol. 2002. 56:315–44 doi: 10.1146/annurev.micro.56.012302.160950 First published online as a Review in Advance on May 7, 2002 THE CLASS MESOMYCETOZOEA: A Heterogeneous Group of Microorganisms at the Animal-Fungal Boundary Leonel Mendoza,1 John W. Taylor,2 and Libero Ajello3 1Medical Technology Program, Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing Michigan, 48824-1030; e-mail: [email protected] 2Department of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102; e-mail: [email protected] 3Centers for Disease Control and Prevention, Mycotic Diseases Branch, Atlanta Georgia 30333; e-mail: [email protected] Key Words Protista, Protozoa, Neomonada, DRIP, Ichthyosporea ■ Abstract When the enigmatic fish pathogen, the rosette agent, was first found to be closely related to the choanoflagellates, no one anticipated finding a new group of organisms. Subsequently, a new group of microorganisms at the boundary between an- imals and fungi was reported. Several microbes with similar phylogenetic backgrounds were soon added to the group. Interestingly, these microbes had been considered to be fungi or protists. This novel phylogenetic group has been referred to as the DRIP clade (an acronym of the original members: Dermocystidium, rosette agent, Ichthyophonus, and Psorospermium), as the class Ichthyosporea, and more recently as the class Mesomycetozoea. Two orders have been described in the mesomycetozoeans: the Der- mocystida and the Ichthyophonida. So far, all members in the order Dermocystida have been pathogens either of fish (Dermocystidium spp.