Spatio-Temporal Patterns in the Coral Reef Communities of The
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Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
Orientation of Pelagic Larvae of Coral-Reef Fishes in the Ocean
MARINE ECOLOGY PROGRESS SERIES Vol. 252: 239–253, 2003 Published April 30 Mar Ecol Prog Ser Orientation of pelagic larvae of coral-reef fishes in the ocean Jeffrey M. Leis*, Brooke M. Carson-Ewart Ichthyology, and Centre for Biodiversity and Conservation Research, Australian Museum, 6 College St, Sydney, New South Wales 2010, Australia ABSTRACT: During the day, we used settlement-stage reef-fish larvae from light-traps to study in situ orientation, 100 to 1000 m from coral reefs in water 10 to 40 m deep, at Lizard Island, Great Barrier Reef. Seven species were observed off leeward Lizard Island, and 4 species off the windward side. All but 1 species swam faster than average ambient currents. Depending on area, time, and spe- cies, 80 to 100% of larvae swam directionally. Two species of butterflyfishes Chaetodon plebeius and Chaetodon aureofasciatus swam away from the island, indicating that they could detect the island’s reefs. Swimming of 4 species of damselfishes Chromis atripectoralis, Chrysiptera rollandi, Neo- pomacentrus cyanomos and Pomacentrus lepidogenys ranged from highly directional to non- directional. Only in N. cyanomos did swimming direction differ between windward and leeward areas. Three species (C. atripectoralis, N. cyanomos and P. lepidogenys) were observed in morning and late afternoon at the leeward area, and all swam in a more westerly direction in the late after- noon. In the afternoon, C. atripectoralis larvae were highly directional in sunny conditions, but non- directional and individually more variable in cloudy conditions. All these observations imply that damselfish larvae utilized a solar compass. Caesio cuning and P. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
Chromis Pacifica, a New Pacific Ocean Damselfish Distinct from Indian Ocean Chromis Agilis (Teleostei: Pomacentridae)
Chromis pacifica, a new Pacific Ocean damselfish distinct from Indian Ocean Chromis agilis (Teleostei: Pomacentridae) GERALD R. ALLEN Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986, Australia https://orcid.org/0000-0002-4661-4898 E-mail: [email protected] MARK V. ERDMANN Conservation International New Zealand, University of Auckland, 23 Symonds St., Auckland 1020 New Zealand California Academy of Sciences, Golden Gate Park, San Francisco, CA 94118, USA https://orcid.org/0000-0002-3644-8347 E-mail: [email protected] Abstract The common coral-reef damselfish, Chromis agilis Smith, 1960, has long been considered a widespread Indo- Pacific species, ranging from East Africa to French Polynesia and the Hawaiian Islands. The population from the western Indian Ocean looks different from the more well-known Pacific Ocean population and has been described separately as the species Chromis xutha Randall, 1988. However, Chromis agilis was described from type specimens from Seychelles and East Africa, and thus C. xutha is a junior synonym of Chromis agilis. The Pacific population widely recognized as C. agilis is therefore unnamed and is described here as the new species Chromis pacifica. It differs from true C. agilis by having a larger black spot at the base of the pectoral fin, lateral greyish to purplish stripes along scale rows, more dorsal-fin and pectoral-fin rays and lateral-line scales, and a larger size (up to 80 mm SL vs. 55 mm SL). An expanded diagnosis of C. agilis is presented, along with photographs illustrating the differences from C. -
Trophic Structure of Reef Fishes and Relationship of Corallivore Fishes with Hard Coral in Kepulauan Seribu, Jakarta
IOP Conference Series: Earth and Environmental Science PAPER • OPEN ACCESS Trophic structure of reef fishes and relationship of corallivore fishes with hard coral in Kepulauan Seribu, Jakarta To cite this article: B Prabowo et al 2019 IOP Conf. Ser.: Earth Environ. Sci. 278 012059 View the article online for updates and enhancements. This content was downloaded from IP address 170.106.35.76 on 24/09/2021 at 21:15 The 3rd EIW IOP Publishing IOP Conf. Series: Earth and Environmental Science 278 (2019) 012059 doi:10.1088/1755-1315/278/1/012059 Trophic structure of reef fishes and relationship of corallivore fishes with hard coral in Kepulauan Seribu, Jakarta B Prabowo1,2*, K Fahlevy1,2,3, N F D Putra1,2, M Rizqydiani1,2, B M K Rahman1,2, A Habibie1,2, B Subhan1,3 and H Madduppa1,3 1Department of Marine Science and Technology, Bogor Agricultural University, Bogor, Indonesia 2Marine Science and Technology Student Organization (HIMITEKA-IPB), Bogor Agricultural University, Bogor, Indonesia 3Fisheries Diving Club, Bogor Agricultural University, Bogor, Indonesia *E-mail: [email protected] Abstract. Corallivore became one of the biotic components that relate with coral coverage. The objective of this study was to determine the trophic structure of reef fishes, as well as the relationship between corallivores and hard corals in the northern part of Kepulauan Seribu. Reef fish species and benthic coverage were assessed using underwater visual census (UVCs) and Line Intercept Transect (LIT). The results showed that there were 120 reef fish species belonging to 7 trophic groups and 19 families. Pomacentridae and Labridae are the most abundant fish families. -
The Functioning of Coral Reef Communities Along Environmental Gradients
The Functioning of Coral Reef Communities Along Environmental Gradients Ph.D. Thesis Jeremiah Grahm Plass-Johnson Dissertation zur Erlangung des Doktorgrades der Natuwissenschaften der Universität Bremen, Fachbereich Biologie/Chemie. Die vorliegende Arbeit wurde in der Zeit von Juni 2012 bis Mai 2015 am Leibniz-Zentrum für marine Tropenökologie in Bremen angefertigt. Finanziert wurde die Arbeit über das Bundesministerium für Bildung und Forschung (Grant no. 03F0643A) im Rahmen des bilateralen Deutsch-Indonesischen Projekts, Science for the Protection of Indonesian Coastal Ecosystems (SPICE III). Gutachter: Prof. Dr. Kai Bischof (Erstgutachter) Prof. Dr. Matthias Wolf (Zweitgutachter) Prüfer: Prof. Dr. Claudio Richter Dr. Mirta Teichberg Weitere Mitglieder des Prüfungsausschusses Jasmin Heiden (Doktorand) Tom Vierus (Student) Datum des Promotionskolloquiums: 21. Juli 2015 Summary One of the primary challenges in ecology is to understand how environmental disturbance affects diversity and community structure, and what are the subsequent consequences on ecosystem functioning. Coral reefs are some of the most diverse ecosystems on the planet resulting in complex sets of interactions between benthic, habitat-forming constituents and mobile fish consumers. However, scleractinian corals, the primary habitat engineers, are dependent on high-light, low- nutrient water conditions and thus are highly responsive when the environment varies from this status. In Southeast Asia, an increase in human coastal populations centred around urban areas has resulted in extensive changes to the coastal environment such as degraded water quality and removal of fish consumers. This has resulted in highly varied abiotic and biotic conditions in relation with distance from the shore. Often, coral reefs closer to shore are much lower in benthic and fish diversity than those further from anthropogenic influences, with direct impacts on ecosystem functioning. -
Introduced Marine Species in Pago Pago Harbor, Fagatele Bay and the National Park Coast, American Samoa
INTRODUCED MARINE SPECIES IN PAGO PAGO HARBOR, FAGATELE BAY AND THE NATIONAL PARK COAST, AMERICAN SAMOA December 2003 COVER Typical views of benthic organisms from sampling areas (clockwise from upper left): Fouling organisms on debris at Pago Pago Harbor Dry Dock; Acropora hyacinthus tables in Fagetele Bay; Porites rus colonies in Fagasa Bay; Mixed branching and tabular Acropora in Vatia Bay INTRODUCED MARINE SPECIES IN PAGO PAGO HARBOR, FAGATELE BAY AND THE NATIONAL PARK COAST, AMERICAN SAMOA Final report prepared for the U.S. Fish and Wildlife Service, Fagetele Bay Marine Sanctuary, National Park of American Samoa and American Samoa Department of Marine and Natural Resources. S. L. Coles P. R. Reath P. A. Skelton V. Bonito R. C. DeFelice L. Basch Bishop Museum Pacific Biological Survey Bishop Museum Technical Report No 26 Honolulu Hawai‘i December 2003 Published by Bishop Museum Press 1525 Bernice Street Honolulu, Hawai‘i Copyright © 2003 Bishop Museum All Rights Reserved Printed in the United States of America ISSN 1085-455X Contribution No. 2003-007 to the Pacific Biological Survey EXECUTIVE SUMMARY The biological communities at ten sites around the Island of Tutuila, American Samoa were surveyed in October 2002 by a team of four investigators. Diving observations and collections of benthic observations using scuba and snorkel were made at six stations in Pago Pago Harbor, two stations in Fagatele Bay, and one station each in Vatia Bay and Fagasa Bay. The purpose of this survey was to determine the full complement of organisms greater than 0.5 mm in size, including benthic algae, macroinvertebrates and fishes, occurring at each site, and to evaluate the presence and potential impact of nonindigenous (introduced) marine species. -
Coral Reef Fishes Exhibit Strong Responses to a Habitat Boundary
The following supplement accompanies the article Life on the edge: Coral reef fishes exhibit strong responses to a habitat boundary Katie Sambrook*, Geoffrey P. Jones, Mary C. Bonin *Corresponding author: [email protected] Marine Ecology Progress Series 561: 203–215 (2016) Table S1. Feeding guilds for the 51 fish species from 13 families included in surveys. Species were assigned to one of five feeding guilds based on published information about diet. Carnivores were defined as species that primarily consume macro invertebrates (e.g. crustaceans, echinoderms, gastropods) and/or fish. Omnivores were classified as species that consume both plant and animal material, and the category herbivore included species that primarily eat organic plant matter and/or detritus. Planktivores include species documented feeding primarily on plankton in the water column Family Species Feeding guild Reference Acanthuridae Choat et al. 2002, Wilson et al. 2008, Ctenochaetus striatus Herbivore Green & Bellwood 2009 Zebrasoma scopas Herbivore Choat et al. 2002 Balistidae Balistapus undulatus Omnivore Wilson et al. 2008, Pratchett et al. 2011 Chaetodontidae Berumen et al. 2005, Pratchett 2007, Chaetodon baronessa Corallivore Wilson et al. 2008 Chaetodon kleinii Omnivore Pratchett 2005, Pratchett et al. 2008 Chaetodon lunulatus Corallivore Pratchett 2005, Wilson et al. 2008 Chaetodon vagabundus Omnivore Anderson et al. 1981, Wilson et al. 2008 Wilson et al. 2008, Nagelkerken et al. Heniochus varius Carnivore 2009 Cirrhitidae Paracirrhites forsteri Carnivore Leray et al. 2012 Labridae Elliott & Bellwood 2003, Wilson et al. Halichoeres hortulanus Carnivore 2008, Berkström et al. 2012 Halichoeres melanurus Carnivore Pratchett et al. 2011, Berkström et al. 2012 Labroides spp. -
Trophic Classifications of Reef Fishes from the Tropical U.S
TROPHIC CLASSIFICATIONS OF REEF FISHES FROM THE TROPICAL U.S. PACIFIC (Version 1.0) Stuart A. Sandin Marine Biology Research Division Scripps Institution of Oceaongraphy 9500 Gilman Drive La Jolla, CA 92093-0202 [email protected] Completed in collaboration with: Ivor Williams Coral Reef Ecosystem Division NOAA, National Marine Fisheries Service Pacific Islands Fisheries Science Center 1125B Ala Moana Boulevard Honolulu, HI 96822, USA [email protected] Table 1 – List of fish taxa identified across surveys of the coral reef ecosystems of the U.S. Pacific islands. Taxa are organized alphabetically by family, and alphabetically within family by lowest identified level (typically species). Trophic classifications are provided in coarse groups based on major diet items integrated across the life stages of each species. The four groups are Primary Consumer (including herbivores and detritivores), Secondary Consumer (including invertivores, corallivores, and omnivores), Planktivores (primarily consuming zooplankton), and Piscivores (including species with fish as the dominant diet item). -
Pomacentridae) in One Tree Island Lagoon, Great Barrier Reef
MARINE ECOLOGY PROGRESS SERIES Vol. 226: 157-164,2002 Mar EcolProg Ser Published January 31 Distribution changes after settlement in six species of damselfish (Pomacentridae) in One Tree Island lagoon, Great Barrier Reef David J. Booth" Department of Environmental Sciences, University of Technology, Sydney, Westbourne Street, Gore Hill NSW 2065, Australia ABSTRACT:While larval supply patterns playa major role in determining the distribution and abun- dance of reef fishes at a range of spatial and temporal scales, events occurring in the weeks after set- tlement may also significantly alter the demography of a juvenile population. I monitored over 2 sum- mers the arrival of new recruits of 6 species of benthic dams elfish onto continuous and patch reef habitat in One Tree Island lagoon. Each species had specific habitat preferences, and most showed some form of patchiness in spatial and temporal distribution at settlement; however, this was most likely a result of group settlement rather than habitat patchiness. Tagged recruits of Pomacentrus amboinensis remained within 1 m of their settlement site for at least the first 36 d on continuous reef, while known individuals of other species also moved little during this period, suggesting that disap- pearances were likely to be due to mortality. Mortality of recruits varied among species, years and habitats (patch vs continuous reef), and consequently spatial distributions of fish changed after set- tlement at the scale of lOs of metres (within-site) and several kilometres (among 8 sites). The spatial patchiness in distributions was not consistent among species, sites or years, suggesting that spatial variation in substrate did not have a major effect on settlement variation at this scale. -
APO REEF NATURAL PARK Rapid Site Assessment Report * April 2014
APO REEF NATURAL PARK Rapid Site Assessment Report * April 2014 Copyright: © Mindoro Biodiversity Conservation Foundation Inc. All rights reserved: Reproduction of this publication for resale or other commercial purposes, in any form or by any means, is prohibited without the express written permission from the publisher. Recommended Citation: Tabaranza,D.G.E, Cielo,K.L.S., Natural Jr,V., Dela Rosa Jr,G., Molina,E.P., Abes,J.L., Capoquian,R., Abes,M.L., Francisco,A.N. and G.C.Diamante(2014). Apo Reef Natural Park Rapid Site Assessment Report. Muntinlupa City. Mindoro Biodiversity Conservation Foundation Inc. ISBN 978-621-8010-08-6 Published by: Mindoro Biodiversity Conservation Foundation Inc. Manila Office 22F Asian Star Building, ASEAN Drive Filinvest Corporate City, Alabang, Muntilupa City, 1780 Philippines Telephone: +63 2 8502188 Fax: +63 2 8099447 E-mail: [email protected] Website: www.mbcfi.org.ph Provincial Office Gozar Street, Barangay Camilmil, Calapan City, Oriental Mindoro, 5200 Philippines Telephone/Fax: +63 43 2882326 0 APO REEF NATURAL PARK Rapid Site Assessment Report * April 2014 Table of Contents Section Page Acronyms & Abbreviations 2 List of Figures 3 List of Tables 4 List of Appendices 4 1. INTRODUCTION 5 2. RSA OBJECTIVES, SCOPE AND LIMMITATIONS 7 2.1. Objectives 7 2.2. Approach, Scope and Limitations 7 2.3. Data Collection Methods 8 Geo-physical Characteristics Biological Resources Socio-economic Characteristics 3. PROTECTED AREA PROFILE 14 3.1. Geo-Physical Characteristics 14 3.2. Terrestrial Biodiversity 15 Flora Fauna 3.3. Marine Biodiversity 20 Coral Reef Communities Reef Fish Communities 3.4. Socio-Cultural and Economic Profile 23 4. -
NBSREA Design Cvrs V2.Pub
February 2009 TNC Pacific Island Countries Report No 1/09 Rapid Ecological Assessment Northern Bismarck Sea Papua New Guinea Technical report of survey conducted August 13 to September 7, 2006 Edited by: Richard Hamilton, Alison Green and Jeanine Almany Supported by: AP Anonymous February 2009 TNC Pacific Island Countries Report No 1/09 Rapid Ecological Assessment Northern Bismarck Sea Papua New Guinea Technical report of survey conducted August 13 to September 7, 2006 Edited by: Richard Hamilton, Alison Green and Jeanine Almany Published by: The Nature Conservancy, Indo-Pacific Resource Centre Author Contact Details: Dr. Richard Hamilton, 51 Edmondstone Street, South Brisbane, QLD 4101 Australia Email: [email protected] Suggested Citation: Hamilton, R., A. Green and J. Almany (eds.) 2009. Rapid Ecological Assessment: Northern Bismarck Sea, Papua New Guinea. Technical report of survey conducted August 13 to September 7, 2006. TNC Pacific Island Countries Report No. 1/09. © 2009, The Nature Conservancy All Rights Reserved. Reproduction for any purpose is prohibited without prior permission. Cover Photo: Manus © Gerald Allen ISBN 9980-9964-9-8 Available from: Indo-Pacific Resource Centre The Nature Conservancy 51 Edmondstone Street South Brisbane, QLD 4101 Australia Or via the worldwide web at: conserveonline.org/workspaces/pacific.island.countries.publications ii Foreword Manus and New Ireland provinces lie north of the Papua New Guinea mainland in the Bismarck Archipelago. More than half of the local communities in our provinces are coastal inhabitants, who for thousands of years have depended on marine resources for their livelihood. For coastal communities survival and prosperity is integrally linked to healthy marine ecosystems.