PETITION to LIST the TEXAS KANGAROO RAT (Dipodomys Elator) UNDER the U.S
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The Beaver's Phylogenetic Lineage Illuminated by Retroposon Reads
www.nature.com/scientificreports OPEN The Beaver’s Phylogenetic Lineage Illuminated by Retroposon Reads Liliya Doronina1,*, Andreas Matzke1,*, Gennady Churakov1,2, Monika Stoll3, Andreas Huge3 & Jürgen Schmitz1 Received: 13 October 2016 Solving problematic phylogenetic relationships often requires high quality genome data. However, Accepted: 25 January 2017 for many organisms such data are still not available. Among rodents, the phylogenetic position of the Published: 03 March 2017 beaver has always attracted special interest. The arrangement of the beaver’s masseter (jaw-closer) muscle once suggested a strong affinity to some sciurid rodents (e.g., squirrels), placing them in the Sciuromorpha suborder. Modern molecular data, however, suggested a closer relationship of beaver to the representatives of the mouse-related clade, but significant data from virtually homoplasy- free markers (for example retroposon insertions) for the exact position of the beaver have not been available. We derived a gross genome assembly from deposited genomic Illumina paired-end reads and extracted thousands of potential phylogenetically informative retroposon markers using the new bioinformatics coordinate extractor fastCOEX, enabling us to evaluate different hypotheses for the phylogenetic position of the beaver. Comparative results provided significant support for a clear relationship between beavers (Castoridae) and kangaroo rat-related species (Geomyoidea) (p < 0.0015, six markers, no conflicting data) within a significantly supported mouse-related clade (including Myodonta, Anomaluromorpha, and Castorimorpha) (p < 0.0015, six markers, no conflicting data). Most of an organism’s phylogenetic history is fossilized in their heritable genomic material. Using data from genome sequencing projects, particularly informative regions of this material can be extracted in sufficient num- bers to resolve the deepest history of speciation. -
Platypus Collins, L.R
AUSTRALIAN MAMMALS BIOLOGY AND CAPTIVE MANAGEMENT Stephen Jackson © CSIRO 2003 All rights reserved. Except under the conditions described in the Australian Copyright Act 1968 and subsequent amendments, no part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, duplicating or otherwise, without the prior permission of the copyright owner. Contact CSIRO PUBLISHING for all permission requests. National Library of Australia Cataloguing-in-Publication entry Jackson, Stephen M. Australian mammals: Biology and captive management Bibliography. ISBN 0 643 06635 7. 1. Mammals – Australia. 2. Captive mammals. I. Title. 599.0994 Available from CSIRO PUBLISHING 150 Oxford Street (PO Box 1139) Collingwood VIC 3066 Australia Telephone: +61 3 9662 7666 Local call: 1300 788 000 (Australia only) Fax: +61 3 9662 7555 Email: [email protected] Web site: www.publish.csiro.au Cover photos courtesy Stephen Jackson, Esther Beaton and Nick Alexander Set in Minion and Optima Cover and text design by James Kelly Typeset by Desktop Concepts Pty Ltd Printed in Australia by Ligare REFERENCES reserved. Chapter 1 – Platypus Collins, L.R. (1973) Monotremes and Marsupials: A Reference for Zoological Institutions. Smithsonian Institution Press, rights Austin, M.A. (1997) A Practical Guide to the Successful Washington. All Handrearing of Tasmanian Marsupials. Regal Publications, Collins, G.H., Whittington, R.J. & Canfield, P.J. (1986) Melbourne. Theileria ornithorhynchi Mackerras, 1959 in the platypus, 2003. Beaven, M. (1997) Hand rearing of a juvenile platypus. Ornithorhynchus anatinus (Shaw). Journal of Wildlife Proceedings of the ASZK/ARAZPA Conference. 16–20 March. -
Dipodomys Ingens)
Species Status Assessment Report for the Giant Kangaroo Rat (Dipodomys ingens) Photo by Elizabeth Bainbridge Version 1.0 August 2020 Prepared by the U.S. Fish and Wildlife Service August 2020 GKR SSA Report – August 2020 EXECUTIVE SUMMARY The U.S. Fish and Wildlife Service listed the giant kangaroo rat (Dipodomys ingens) as endangered under the Endangered Species Act in 1987 due to the threats of habitat loss and widespread rodenticide use (Service 1987, entire). The giant kangaroo rat is the largest species in the genus that contains all kangaroo rats. The giant kangaroo rat is found only in south-central California, on the western slopes of the San Joaquin Valley, the Carrizo and Elkhorn Plains, and the Cuyama Valley. The preferred habitat of the giant kangaroo rat is native, sloping annual grasslands with sparse vegetation (Grinnell, 1932; Williams, 1980). This report summarizes the results of a species status assessment (SSA) that the U. S. Fish and Wildlife Service (Service) completed for the giant kangaroo rat. To assess the species’ viability, we used the three conservation biology principles of resiliency, redundancy, and representation (together, the 3Rs). These principles rely on assessing the species at an individual, population, and species level to determine whether the species can persist into the future and avoid extinction by having multiple resilient populations distributed widely across its range. Giant kangaroo rats remain in fragmented habitat patches throughout their historical range. However, some areas where giant kangaroo rats once existed have not had documented occurrences for 30 years or more. The giant kangaroo rat is found in six geographic areas (units), representing the northern, middle, and southern portions of the range. -
Literature Cited
Literature Cited Robert W. Kiger, Editor This is a consolidated list of all works cited in volumes 19, 20, and 21, whether as selected references, in text, or in nomenclatural contexts. In citations of articles, both here and in the taxonomic treatments, and also in nomenclatural citations, the titles of serials are rendered in the forms recommended in G. D. R. Bridson and E. R. Smith (1991). When those forms are abbre- viated, as most are, cross references to the corresponding full serial titles are interpolated here alphabetically by abbreviated form. In nomenclatural citations (only), book titles are rendered in the abbreviated forms recommended in F. A. Stafleu and R. S. Cowan (1976–1988) and F. A. Stafleu and E. A. Mennega (1992+). Here, those abbreviated forms are indicated parenthetically following the full citations of the corresponding works, and cross references to the full citations are interpolated in the list alphabetically by abbreviated form. Two or more works published in the same year by the same author or group of coauthors will be distinguished uniquely and consistently throughout all volumes of Flora of North America by lower-case letters (b, c, d, ...) suffixed to the date for the second and subsequent works in the set. The suffixes are assigned in order of editorial encounter and do not reflect chronological sequence of publication. The first work by any particular author or group from any given year carries the implicit date suffix “a”; thus, the sequence of explicit suffixes begins with “b”. Works missing from any suffixed sequence here are ones cited elsewhere in the Flora that are not pertinent in these volumes. -
Vascular Plants and a Brief History of the Kiowa and Rita Blanca National Grasslands
United States Department of Agriculture Vascular Plants and a Brief Forest Service Rocky Mountain History of the Kiowa and Rita Research Station General Technical Report Blanca National Grasslands RMRS-GTR-233 December 2009 Donald L. Hazlett, Michael H. Schiebout, and Paulette L. Ford Hazlett, Donald L.; Schiebout, Michael H.; and Ford, Paulette L. 2009. Vascular plants and a brief history of the Kiowa and Rita Blanca National Grasslands. Gen. Tech. Rep. RMRS- GTR-233. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 44 p. Abstract Administered by the USDA Forest Service, the Kiowa and Rita Blanca National Grasslands occupy 230,000 acres of public land extending from northeastern New Mexico into the panhandles of Oklahoma and Texas. A mosaic of topographic features including canyons, plateaus, rolling grasslands and outcrops supports a diverse flora. Eight hundred twenty six (826) species of vascular plant species representing 81 plant families are known to occur on or near these public lands. This report includes a history of the area; ethnobotanical information; an introductory overview of the area including its climate, geology, vegetation, habitats, fauna, and ecological history; and a plant survey and information about the rare, poisonous, and exotic species from the area. A vascular plant checklist of 816 vascular plant taxa in the appendix includes scientific and common names, habitat types, and general distribution data for each species. This list is based on extensive plant collections and available herbarium collections. Authors Donald L. Hazlett is an ethnobotanist, Director of New World Plants and People consulting, and a research associate at the Denver Botanic Gardens, Denver, CO. -
Illustrated Flora of East Texas Illustrated Flora of East Texas
ILLUSTRATED FLORA OF EAST TEXAS ILLUSTRATED FLORA OF EAST TEXAS IS PUBLISHED WITH THE SUPPORT OF: MAJOR BENEFACTORS: DAVID GIBSON AND WILL CRENSHAW DISCOVERY FUND U.S. FISH AND WILDLIFE FOUNDATION (NATIONAL PARK SERVICE, USDA FOREST SERVICE) TEXAS PARKS AND WILDLIFE DEPARTMENT SCOTT AND STUART GENTLING BENEFACTORS: NEW DOROTHEA L. LEONHARDT FOUNDATION (ANDREA C. HARKINS) TEMPLE-INLAND FOUNDATION SUMMERLEE FOUNDATION AMON G. CARTER FOUNDATION ROBERT J. O’KENNON PEG & BEN KEITH DORA & GORDON SYLVESTER DAVID & SUE NIVENS NATIVE PLANT SOCIETY OF TEXAS DAVID & MARGARET BAMBERGER GORDON MAY & KAREN WILLIAMSON JACOB & TERESE HERSHEY FOUNDATION INSTITUTIONAL SUPPORT: AUSTIN COLLEGE BOTANICAL RESEARCH INSTITUTE OF TEXAS SID RICHARDSON CAREER DEVELOPMENT FUND OF AUSTIN COLLEGE II OTHER CONTRIBUTORS: ALLDREDGE, LINDA & JACK HOLLEMAN, W.B. PETRUS, ELAINE J. BATTERBAE, SUSAN ROBERTS HOLT, JEAN & DUNCAN PRITCHETT, MARY H. BECK, NELL HUBER, MARY MAUD PRICE, DIANE BECKELMAN, SARA HUDSON, JIM & YONIE PRUESS, WARREN W. BENDER, LYNNE HULTMARK, GORDON & SARAH ROACH, ELIZABETH M. & ALLEN BIBB, NATHAN & BETTIE HUSTON, MELIA ROEBUCK, RICK & VICKI BOSWORTH, TONY JACOBS, BONNIE & LOUIS ROGNLIE, GLORIA & ERIC BOTTONE, LAURA BURKS JAMES, ROI & DEANNA ROUSH, LUCY BROWN, LARRY E. JEFFORDS, RUSSELL M. ROWE, BRIAN BRUSER, III, MR. & MRS. HENRY JOHN, SUE & PHIL ROZELL, JIMMY BURT, HELEN W. JONES, MARY LOU SANDLIN, MIKE CAMPBELL, KATHERINE & CHARLES KAHLE, GAIL SANDLIN, MR. & MRS. WILLIAM CARR, WILLIAM R. KARGES, JOANN SATTERWHITE, BEN CLARY, KAREN KEITH, ELIZABETH & ERIC SCHOENFELD, CARL COCHRAN, JOYCE LANEY, ELEANOR W. SCHULTZE, BETTY DAHLBERG, WALTER G. LAUGHLIN, DR. JAMES E. SCHULZE, PETER & HELEN DALLAS CHAPTER-NPSOT LECHE, BEVERLY SENNHAUSER, KELLY S. DAMEWOOD, LOGAN & ELEANOR LEWIS, PATRICIA SERLING, STEVEN DAMUTH, STEVEN LIGGIO, JOE SHANNON, LEILA HOUSEMAN DAVIS, ELLEN D. -
Literature Cited
LITERATURE CITED ABU-ASAB, M.S. and P.D. CANTINO. 1989. Pollen morphology of Trichostema (Labiatae) and its systematic implications. Syst. Bot. 14:359--369. _____ and _____. 1993. Phylogenetic implications of pollen morphology in tribe Ajugeae (Labiatae). Syst. Bot. 18:100--122. ACHEY, D.M. 1933. A revision of the section Gymnocaulis of the genus Orobanche. Bull. Torrey Bot. Club 60:441--451. ADAMS, R.P. 1972. Chemosystematic and numerical studies of natural populations of Juniperus pinchotii Sudworth. Taxon 21:407--427. _____. 1975. Numerical-chemosystematic studies of infraspecific variation in Juniperus pinchotii. Biochem. Syst. & Ecol. 3:71--74. _____. 1986. Geographical variation in Juniperus silicola and J. virginiana in the southeastern United States: Multivariate analysis of morphology and terpenoids. Taxon 35:61--75. _____. 1993. Juniperus. In: Flora of North America Editorial Committee, eds. Fl. North Amer. 2:412--420. Oxford Univ. Press, New York and Oxford. ADAMS, W.P. 1957. A revision of the genus Ascyrum (Hypericaceae). Rhodora 59:73--95. _____. 1962. Studies in the Guttiferae I. A synopsis of Hypericum section Myriandra. Contr. Gray Herb. 189:3--51. _____. 1973. Clusiaceae of the southeastern United States. J. Elisha Mitchell Sci. Soc. 89:62--71. _____ and N.K.B. ROBSON. 1961. A re-evaluation of the generic status of Ascyrum and Crookea (Guttiferae). Rhodora 63:10--16. AELLEN, P. and T. JUST. 1943. Key and synopsis of the American species of the genus Chenopodium L. Amer. Midl. Naturalist 30:47--76. AHRENDT, L.W.A. 1961. Berberis and Mahonia: a taxonomic revision. J. Linn. Soc., Bot. -
Let the Listings Begin
the word from WildEarth Guardians No. 10, Summer 2011 Let the Listings Begin Historic Agreement Will Give Hundreds of Endangered Species a Chance at Protection restoring the vision John Horning obody likes to wait — especially in the emergency room at the hospital, when every minute counts. But that’s exactly what’s happened for N hundreds of America’s most endangered, but as yet unprotected, plants and Mission stateMent animals. More than 250 species are currently waiting for what they need most: WildEarth Guardians protects and restores the wildlife, wild places, and wild rivers formal protection under the Endangered Species Act (ESA). of the American West. Most of these candidates have been waiting for more than 20 years for listing. And now, thanks to a historic legal settlement between WildEarth Board of dirEctors Peter Schoenburg, PrEsidEnt Guardians and the U.S. Fish and Wildlife Service (FWS), the wait is over — or Robin Smith, VicE PrEsidEnt at least soon to be over, now that there is finally a legally enforceable agreement Shannon Larsen, trEasurEr that will require the FWS to make decisions that could move 253 of these Todd Ringler, sEcrEtary imperiled species onto the protective ark that is the ESA. Another 600-plus Jess Alford Mark Rickman Mike Brown Vanessa Scurci species will also receive some attention moving them through the ESA listing Doug Erwin Jon Spar process. It’s going to take a little while because the waiting line grew and grew Stephanie Forrest Bill Syme longer under past administrations that ignored the problem. staff For species such as the greater sage-grouse, lesser prairie-chicken, lynx, Whitney Bacon, it Guru and Sonoran desert tortoise, the end to the waiting is long overdue. -
How Does Genome Size Affect the Evolution of Pollen Tube Growth Rate, a Haploid Performance Trait?
Manuscript bioRxiv preprint doi: https://doi.org/10.1101/462663; this version postedClick April here18, 2019. to The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv aaccess/download;Manuscript;PTGR.genome.evolution.15April20 license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Effects of genome size on pollen performance 2 3 4 5 How does genome size affect the evolution of pollen tube growth rate, a haploid 6 performance trait? 7 8 9 10 11 John B. Reese1,2 and Joseph H. Williams2 12 Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 13 37996, U.S.A. 14 15 16 17 1Author for correspondence: 18 John B. Reese 19 Tel: 865 974 9371 20 Email: [email protected] 21 1 bioRxiv preprint doi: https://doi.org/10.1101/462663; this version posted April 18, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 22 ABSTRACT 23 Premise of the Study – Male gametophytes of most seed plants deliver sperm to eggs via a 24 pollen tube. Pollen tube growth rates (PTGRs) of angiosperms are exceptionally rapid, a pattern 25 attributed to more effective haploid selection under stronger pollen competition. Paradoxically, 26 whole genome duplication (WGD) has been common in angiosperms but rare in gymnosperms. -
Endangered Species Research: Texas Kangaroo Rat Dipodomys Elator Final Report (31 December 2019) John D. Stuhler, Michaela K. H
Endangered Species Research: Texas Kangaroo Rat Dipodomys elator Final Report (31 December 2019) John D. Stuhler, Michaela K. Halsey, Carlos Portillo-Quintero, David A. Ray, Robert D. Bradley and Richard D. Stevens Texas Tech University Lubbock, Texas 1 Executive Summary The Texas kangaroo rat is a rare and potentially threatened species that today only occurs in the state of Texas. Because of its small endemic geographic distribution this species is currently being considered for listing under the Endangered Species Act (ESA). Before an informed decision of whether to list D. elator under the ESA can be made, comprehensive assessment of the ecology, distribution, abundance, and genetic diversity of this species should be conducted. Although qualitative anecdotal accounts of habitat affinities are available in the literature, little is known about actual habitat characteristics that are important to this species. Moreover, important quantitative habitat characteristics can be determined and used to predict presence/absence or abundance of Texas kangaroo rats as well as to inform conservation and restoration efforts. Complicating this, however, are numerous observations of Texas kangaroo rats no longer occurring at sites where they were previously observed as well as novel records of occurrence. This research enhances our understanding of the biology of D. elator in the state of Texas and helps to inform the U.S. Fish and Wildlife Service regarding the decision to list this species under the ESA. Here, we report results of research to -
Ord's Kangaroo Rat, Dipodomys Ordii
COSEWIC Assessment and Status Report on the Ord’s Kangaroo Rat Dipodomys ordii in Canada ENDANGERED 2017 COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: COSEWIC. 2017. COSEWIC assessment and status report on the Ord’s Kangaroo Rat Dipodomys ordii in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. xiii + 58 pp. (http://www.registrelep-sararegistry.gc.ca/default.asp?lang=en&n=24F7211B-1). Previous report(s): COSEWIC 2006. COSEWIC assessment and update status report on the Ord’s kangaroo rat Dipodomys ordii in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. vii + 34 pp. (www.sararegistry.gc.ca/status/status_e.cfm). Gummer, D.L. 1995. COSEWIC status report on the Ord's kangaroo rat Dipodomys ordii in Canada. Committee on the Status of Endangered Wildlife in Canada. 1-27 pp. Production note: COSEWIC would like to acknowledge Darren Bender and David Gummer for writing the status report on Ord’s Kangaroo Rat (Dipodomys ordii) in Canada, prepared under contract with Environment and Climate Change Canada. This report was overseen and edited by Justina Ray, Co-chair of the COSEWIC Terrestrial Mammals Specialist Subcommittee. For additional copies contact: COSEWIC Secretariat c/o Canadian Wildlife Service Environment and Climate Change Canada Ottawa, ON K1A 0H3 Tel.: 819-938-4125 Fax: 819-938-3984 E-mail: [email protected] http://www.cosewic.gc.ca Également disponible en français sous le titre Ếvaluation et Rapport de situation du COSEPAC sur le Rat kangourou d'Ord (Dipodomys ordii) au Canada. -
Oklahoma Native Plant Record, Volume 17, Number 1, December
Oklahoma Native Plant Record 53 Volume 17, December 2017 VASCULAR FLORA OF E. C. HAFER PARK, EDMOND, OKLAHOMA Gloria M. Caddell Katie Christoffel Carmen Esqueda Alonna Smith Department of Biology University of Central Oklahoma Edmond, OK 73007 [email protected] Keywords: floristic inventory, urban park, Cross Timbers, non-native, invasive ABSTRACT E. C. Hafer Park is located on the western edge of the Cross Timbers ecoregion, in central Oklahoma within the City of Edmond. The park contains post oak-blackjack oak forest, tallgrass prairie, riparian forest, and areas developed for recreational activities. A vascular plant inventory conducted during 2013, 2015, 2016, and 2017 yielded 270 species in 190 genera and 65 families. The largest families were the Asteraceae (46 species), Poaceae (42), and Fabaceae (27). There were 96 annuals, four biennials, and 170 perennials. Sixty species (22.2%) were not native to the United States. No rare species currently being tracked by the Oklahoma Natural Heritage Inventory were present. Compared to floristic inventories for other sites of similar size in Oklahoma, Hafer Park has a relatively high number of species. However, it also has a relatively high percentage of exotic species from other continents, some of which are invasive and are threatening the native forest, grassland, and riparian plant communities. INTRODUCTION groups. For vascular plants, however, urban parks often have a large percentage of exotic Efforts to protect biodiversity often species, sometimes over 50% (Nielsen et al. focus on large natural habitats outside of 2013). highly urbanized locations, but efforts Palmer et al. (1995) summarized the should also be made to preserve and importance of floristic inventories in promote biodiversity in urban forests and providing data for research on biodiversity, other urban green spaces that have environmental impact assessment, and maintained relatively high levels of management decisions.