Bioplastic and Biopolymer Production - Ian W
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A Review on Revolutionary Natural Biopolymer-Based Aerogels for Antibacterial Delivery
antibiotics Review A Review on Revolutionary Natural Biopolymer-Based Aerogels for Antibacterial Delivery Esam Bashir Yahya 1 , Fauziah Jummaat 2,*, A. A. Amirul 3,* , A. S. Adnan 2, N. G. Olaiya 1 , C. K. Abdullah 1 , Samsul Rizal 4, M. K. Mohamad Haafiz 1 and H. P. S. Abdul Khalil 1,* 1 School of Industrial Technology, Universiti Sains Malaysia, Penang 11800, Malaysia; [email protected] (E.B.Y.); [email protected] (N.G.O.); [email protected] (C.K.A.); mhaafi[email protected] (M.K.M.H.) 2 Management Science University Medical Centre, University Drive, Off Persiaran Olahraga, Section 13, Shah Alam, Selangor 40100, Malaysia; [email protected] 3 School of Biological Sciences, Universiti Sains Malaysia, Penang 11800, Malaysia 4 Department of Mechanical Engineering, Universitas Syiah Kuala, Banda Aceh 23111, Indonesia; [email protected] * Correspondence: [email protected] (F.J.); [email protected] (A.A.A.); [email protected] (H.P.S.A.K.) Received: 10 September 2020; Accepted: 27 September 2020; Published: 28 September 2020 Abstract: A biopolymer-based aerogel has been developed to become one of the most potentially utilized materials in different biomedical applications. The biopolymer-based aerogel has unique physical, chemical, and mechanical properties and these properties are used in tissue engineering, biosensing, diagnostic, medical implant and drug delivery applications. Biocompatible and non-toxic biopolymers such as chitosan, cellulose and alginates have been used to deliver antibiotics, plants extract, essential oils and metallic nanoparticles. Antibacterial aerogels have been used in superficial and chronic wound healing as dressing sheets. This review critically analyses the utilization of biopolymer-based aerogels in antibacterial delivery. -
A Comparative Review of Natural and Synthetic Biopolymer Composite Scaffolds
polymers Review A Comparative Review of Natural and Synthetic Biopolymer Composite Scaffolds M. Sai Bhargava Reddy 1 , Deepalekshmi Ponnamma 2 , Rajan Choudhary 3,4,5 and Kishor Kumar Sadasivuni 2,* 1 Center for Nanoscience and Technology, Institute of Science and Technology, Jawaharlal Nehru Technological University, Hyderabad 500085, India; [email protected] 2 Center for Advanced Materials, Qatar University, Doha P.O. Box 2713, Qatar; [email protected] 3 Rudolfs Cimdins Riga Biomaterials Innovations and Development Centre of RTU, Faculty of Materials Science and Applied Chemistry, Institute of General Chemical Engineering, Riga Technical University, Pulka St 3, LV-1007 Riga, Latvia; [email protected] 4 Baltic Biomaterials Centre of Excellence, Headquarters at Riga Technical University, LV-1007 Riga, Latvia 5 Center for Composite Materials, National University of Science and Technology “MISiS”, 119049 Moscow, Russia * Correspondence: [email protected] Abstract: Tissue engineering (TE) and regenerative medicine integrate information and technology from various fields to restore/replace tissues and damaged organs for medical treatments. To achieve this, scaffolds act as delivery vectors or as cellular systems for drugs and cells; thereby, cellular material is able to colonize host cells sufficiently to meet up the requirements of regeneration and repair. This process is multi-stage and requires the development of various components to create the desired neo-tissue or organ. In several current TE strategies, biomaterials are essential compo- nents. While several polymers are established for their use as biomaterials, careful consideration of the cellular environment and interactions needed is required in selecting a polymer for a given Citation: Reddy, M.S.B.; Ponnamma, application. -
University of Groningen Mutational and Biochemical Analysis Of
University of Groningen Mutational and biochemical analysis of Lactobacillus reuteri glucansucrase enzymes Meng, Xiangfeng IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2015 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Meng, X. (2015). Mutational and biochemical analysis of Lactobacillus reuteri glucansucrase enzymes. University of Groningen. Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 24-09-2021 Chapter 1 General introduction: Tailor-made α-glucans by GH70 glucansucrase enzymes In preparation for submission 7 Chapter 1 Introduction Fossil resources are currently the major energy source and primary feedstock for the chemical industry. However, these resources are finite and unsustainable. At the same time, the widespread use of fossil resources causes severe environmental problems, including climate changes and air pollution. -
Structural Changes in the Oral Microbiome of the Adolescent
www.nature.com/scientificreports OPEN Structural changes in the oral microbiome of the adolescent patients with moderate or severe dental fuorosis Qian Wang1,2, Xuelan Chen1,4, Huan Hu2, Xiaoyuan Wei3, Xiaofan Wang3, Zehui Peng4, Rui Ma4, Qian Zhao4, Jiangchao Zhao3*, Jianguo Liu1* & Feilong Deng1,2,3* Dental fuorosis is a very prevalent endemic disease. Although oral microbiome has been reported to correlate with diferent oral diseases, there appears to be an absence of research recognizing any relationship between the severity of dental fuorosis and the oral microbiome. To this end, we investigated the changes in oral microbial community structure and identifed bacterial species associated with moderate and severe dental fuorosis. Salivary samples of 42 individuals, assigned into Healthy (N = 9), Mild (N = 14) and Moderate/Severe (M&S, N = 19), were investigated using the V4 region of 16S rRNA gene. The oral microbial community structure based on Bray Curtis and Weighted Unifrac were signifcantly changed in the M&S group compared with both of Healthy and Mild. As the predominant phyla, Firmicutes and Bacteroidetes showed variation in the relative abundance among groups. The Firmicutes/Bacteroidetes (F/B) ratio was signifcantly higher in the M&S group. LEfSe analysis was used to identify diferentially represented taxa at the species level. Several genera such as Streptococcus mitis, Gemella parahaemolysans, Lactococcus lactis, and Fusobacterium nucleatum, were signifcantly more abundant in patients with moderate/severe dental fuorosis, while Prevotella melaninogenica and Schaalia odontolytica were enriched in the Healthy group. In conclusion, our study indicates oral microbiome shift in patients with moderate/severe dental fuorosis. -
Biopolymer Films and Potential Applications to Meat and Poultry Products
FRESH MEAT/PACKAGING II Biopolymer Films and Potential Applications to Meat and Poultry Products Paul L. Dawson, James C. Acton* and Amod A. Ogale Introduction developing bio-based packaging in Europe and some U.S. companies are utilizing modified starch materials. Commer- Large amounts of packaging waste are discarded into the cial raw materials include polylactate produced by Cargill U.S. municipal waste system each year. Over 23 million Dow (trade name NatureWorks PLA) and by Mitsui under tons of plastic packaging waste was generated in 1998 (EPA the trade name LACEA. Other starch-based raw packaging 1999). To reduce the amount of synthetic polymer waste, a materials include Novamont (Mater Bi), Biotec (Bioplast), considerable amount of research has been devoted to the and Earth (Earth Shell). These materials require chemical production of bio-based polymer films derived from natural modification of native starch materials and have been tested sources. The use of plant material to form films is an active as molded containers (Salvage, 2001). Much of the re- research topic (Jane et al., 1996). As new applications for search on biopolymer films has involved the production of such materials are still emerging, characterization of renew- films from the method of solvent casting. In contrast, ther- able biopolymers is very important if these materials are to mal processing methods such as compression molding and be used for packaging applications. extrusion have received limited attention. Jane and Wang A question concerning the use of biopolymers as packag- (1996) and Huang et al. (1995) reported on an extru- ing materials is why should these materials be used instead sion/molding technique, whereas Paetau et al. -
Flavonoid Glucodiversification with Engineered Sucrose-Active Enzymes Yannick Malbert
Flavonoid glucodiversification with engineered sucrose-active enzymes Yannick Malbert To cite this version: Yannick Malbert. Flavonoid glucodiversification with engineered sucrose-active enzymes. Biotechnol- ogy. INSA de Toulouse, 2014. English. NNT : 2014ISAT0038. tel-01219406 HAL Id: tel-01219406 https://tel.archives-ouvertes.fr/tel-01219406 Submitted on 22 Oct 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Last name: MALBERT First name: Yannick Title: Flavonoid glucodiversification with engineered sucrose-active enzymes Speciality: Ecological, Veterinary, Agronomic Sciences and Bioengineering, Field: Enzymatic and microbial engineering. Year: 2014 Number of pages: 257 Flavonoid glycosides are natural plant secondary metabolites exhibiting many physicochemical and biological properties. Glycosylation usually improves flavonoid solubility but access to flavonoid glycosides is limited by their low production levels in plants. In this thesis work, the focus was placed on the development of new glucodiversification routes of natural flavonoids by taking advantage of protein engineering. Two biochemically and structurally characterized recombinant transglucosylases, the amylosucrase from Neisseria polysaccharea and the α-(1→2) branching sucrase, a truncated form of the dextransucrase from L. Mesenteroides NRRL B-1299, were selected to attempt glucosylation of different flavonoids, synthesize new α-glucoside derivatives with original patterns of glucosylation and hopefully improved their water-solubility. -
Structure-Function Relationships of Glucansucrase and Fructansucrase Enzymes from Lactic Acid Bacteria Sacha A
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, Mar. 2006, p. 157–176 Vol. 70, No. 1 1092-2172/06/$08.00ϩ0 doi:10.1128/MMBR.70.1.157–176.2006 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Structure-Function Relationships of Glucansucrase and Fructansucrase Enzymes from Lactic Acid Bacteria Sacha A. F. T. van Hijum,1,2†* Slavko Kralj,1,2† Lukasz K. Ozimek,1,2 Lubbert Dijkhuizen,1,2 and Ineke G. H. van Geel-Schutten1,3 Centre for Carbohydrate Bioprocessing, TNO-University of Groningen,1 and Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen,2 9750 AA Haren, The Netherlands, and Innovative Ingredients and Products Department, TNO Quality of Life, Utrechtseweg 48 3704 HE Zeist, The Netherlands3 INTRODUCTION .......................................................................................................................................................157 NOMENCLATURE AND CLASSIFICATION OF SUCRASE ENZYMES ........................................................158 GLUCANSUCRASES .................................................................................................................................................158 Reactions Catalyzed and Glucan Product Synthesis .........................................................................................161 Glucan synthesis .................................................................................................................................................161 Acceptor reaction ................................................................................................................................................161 -
Sergio Rotstein (Pfizer)
What About the Big Guys? The emerging HELM standard for macromolecular representation and the Pistoia Alliance Sergio H. Rotstein – Pfizer Incorporated [email protected] Introduction • Pfizer Goal: “Top-tier biotherapeutics company by 2015” –But informatics infrastructure was inadequate • Biomolecules Team Goal: Remediate infrastructure to enable biomolecule –Registration –Visualization –Analysis and design –Workflows • Many companies facing a similar challenge • Pistoia HELM Goal: Facilitate the public release of HELM, providing a standard for data exchange and reducing need for other companies to develop their own equivalent systems 2 What is a “Biomolecule”? For our purposes, anything that is not a small molecule is ASOs a biomolecule siRNAs Peptides Goal • Eliminate biomolecule Therapeutic Antibodies Proteins penalty • Make these entities first- class citizens of the Informatics tool portfolio ADCs Vaccines 3 So what’s the problem? G A Small Molecule Tools P Sequence-Based Tools HN O Small O N O Sequences Molecules Biomolecules 4 “Fit-for-Purpose” Structure Representation We need to enable the representation, manipulation and visualization of each molecule type in a way that is appropriate for its size and complexity 5 Fit for Purpose: “Monomer” Level • While you could draw out an oligonucleotide like this: • The representation is likely more intuitive / practical: 6 Fit for Purpose: Sequence Level • But even the monomer level representation would not scale well to proteins with hundreds of amino acids. Larger molecules require a more sequence-oriented representation: 7 Fit for Purpose: Component Level • For multi-component structures such as antibody drug conjugates, component level representations are required to enable each component to dealt with separately. -
Crystal Structure of Glucansucrase from the Dental Caries
5 Life Science PF Activity Report 2010 #28 Crystal Structure of Glucansucrase from the Dental Caries Glucansucrases are members of the glycoside hy- second sucrose binding site, namely, subsite +1 and Pathogen, Streptococcus Mutans drolase family 70, and catalyze the formation of glucan +2 (Fig. 1(b) and 1(c)). Trp517 provides the platform with various types of glucosidic linkages, (1-3), (1- for glycosyl-acceptor binding, whereas residues such 4) or (1-6) bonds, from sucrose via transglycosylation as Tyr430, Asn481, and Ser589 comprising subsite lucansucrases from Streptococcus mutans (GTF-SI) catalyze an essential factor in the pathogenesis of dental reactions. In the oral cavity, glucan synthesis by S. mu- +1 are conserved in glucansucrases but not in sugar- caries. Resolution of the GTF-SI structure confi rmed that the domain order of glucansucrase-SI was circularly tans involves three extracellular enzymes, GTF-I, GTF- cutting enzymes. Among these residues, the position Gpermuted compared with that of the well-known -amylase, which catalyses the breakdown of starch into sug- SI and GTF-S. GTF-I and GTF-SI synthesize mainly in- of Asp593 in GTF-SI is critical for glucansucrases that ars. Based on the structure of GTF-SI and a comparison of the amino acids of other glucansucrases, it was revealed soluble sticky glucan with (1-3) glycosidic linkages. We make insoluble and sticky glucan with (1-3) glycosidic that the position of Asp593 in glucansucrase-SI is the most critical point for the orientation of the acceptor sugar, and have used AR-NE3A and 5A beamlines to identify the linkages. -
(Α1‹ →‹ 6) Linkage Specificity in Reuteransucrase Of
www.nature.com/scientificreports OPEN Structural determinants of alternating (α1 → 4) and (α1 → 6) linkage specificity in Received: 03 June 2016 Accepted: 26 September 2016 reuteransucrase of Lactobacillus Published: 17 October 2016 reuteri Xiangfeng Meng1, Tjaard Pijning2, Justyna M. Dobruchowska1, Huifang Yin1, Gerrit J. Gerwig1 & Lubbert Dijkhuizen1 The glucansucrase GTFA of Lactobacillus reuteri 121 produces an α-glucan (reuteran) with a large amount of alternating (α1 → 4) and (α1 → 6) linkages. The mechanism of alternating linkage formation by this reuteransucrase has remained unclear. GTFO of the probiotic bacterium Lactobacillus reuteri ATCC 55730 shows a high sequence similarity (80%) with GTFA of L. reuteri 121; it also synthesizes an α-glucan with (α1 → 4) and (α1 → 6) linkages, but with a clearly different ratio compared to GTFA. In the present study, we show that residues in loop977 (970DGKGYKGA977) and helix α4 (1083VSLKGA1088) are main determinants for the linkage specificity difference between GTFO and GTFA, and hence are important for the synthesis of alternating (α1 → 4) and (α1 → 6) linkages in GTFA. More remote acceptor substrate binding sites (i.e.+3) are also involved in the determination of alternating linkage synthesis, as shown by structural analysis of the oligosaccharides produced using panose and maltotriose as acceptor substrate. Our data show that the amino acid residues at acceptor substrate binding sites (+1, +2, +3…) together form a distinct physicochemical micro-environment that determines the alternating (α1 → 4) and (α1 → 6) linkages synthesis in GTFA. Lactic acid bacteria (LAB) have been widely explored for the production of fermented food, due to their abil- ity of producing lactic acid and their generally recognized as safe (GRAS) status1. -
A Resonant Capacitive Test Structure for Biomolecule Sensing
A RESONANT CAPACITIVE TEST STRUCTURE FOR BIOMOLECULE SENSING Thesis Submitted to The School of Engineering of the UNIVERSITY OF DAYTON In Partial Fulfillment of the Requirements for The Degree of Master of Science in Electrical Engineering By Danielle Nichole Bane UNIVERSITY OF DAYTON Dayton, Ohio August, 2015 A RESONANT CAPACITIVE TEST STRUCTURE FOR BIOMOLECULE SENSING Name: Bane, Danielle Nichole APPROVED BY: Guru Subramanyam, Ph.D. Karolyn M. Hansen, Ph.D. Advisor Committee Chairman Advisor Committee Member Professor and Chair, Department of Professor, Department of Biology Electrical and Computer Engineering Partha Banerjee, Ph.D Committee Member Professor, Department of Electrical and Computer Engineering John G. Weber, Ph.D. Eddy M. Rojas, Ph.D., M.A., P.E. Associate Dean Dean School of Engineering School of Engineering ii c Copyright by Danielle Nichole Bane All rights reserved 2015 ABSTRACT A RESONANT CAPACITIVE TEST STRUCTURE FOR BIOMOLECULE SENSING Name: Bane, Danielle Nichole University of Dayton Advisors: Dr. Guru Subramanyam and Dr. Karolyn M. Hansen Detection of biomolecules in aqueous or vapor phase is a valuable metric in the assessment of health and human performance. For this purpose, resonant capacitive sensors are designed and fab- ricated. The sensor platform used is a resonant test structure (RTS) with a molecular recognition element (MRE) functionalized guanine dielectric layer used as the sensing layer. The sensors are designed such that the selective binding of the biomarkers of interest with the MREs is expected to cause a shift in the test structure’s resonant frequency, amplitude, and phase thereby indicating the biomarker’s presence. This thesis covers several aspects of the design and development of these biosensors. -
Biopolymer Production by Bacterial Species Using Glycerol, a Byproduct of Biodiesel
International Journal of Scientific and Research Publications, Volume 3, Issue 8, August 2013 1 ISSN 2250-3153 Biopolymer production by Bacterial Species using Glycerol, a byproduct of biodiesel S.Sathianachiyar*, Aruna Devaraj** *Research Scholar, Natural Resource Management Centre, Periyakulam,Theni. Tamil Nadu **Director Natural Resource Management Centre, Periyakulam, Theni Tamil Nadu Abstract- Biopolymer producing bacterial species (Bacillus Azotobacter vinelandii, Bacillus subtilis, Haemophilus influenzae and Pseudomonas )were isolated from rhizosphere soil of and Escherichia coli and also in eukaryotic membranes like in Jatropha curcas by using standard morphological, cultural and mitochondria and microsomes as complexes of calcium ions biochemical characteristics.PHB production by bacterial sps (Ca2+) and polyphosphates in a ratio of 2 : 1 : 2 (Reusch,1992). were screened by Sudan black B staining method. The main aim of the present study to production of biopolymers using crude The production of biodiesel generates significant glycerol is a byproduct of biodiesel, act as a sole carbon source quantities of co-product stream rich in glycerol. New uses for for PHB producing microorganisms, under the limitation of glycerol have been the subject of much research to alleviate a nitrogen and phosphate . Ammonium molybdate and ammonium market glut of this commodity and to leverage the economics of sulphate were used in nitrogen deficient medium instead of biodiesel production. One potential use of glycerol is in industrial ammonium chloride. Maximum biopolymer production were fermentation where it can be employed as a substrate for noted in Bacillus spp13.3 gm/100ml.Pseudomonas spp yielded microbial growth and the biosynthesis of microbial products. The 11.2 gm/100 ml.