Phylogenetic Analysis of the Santolina Rosmarinifolia Aggregate (Asteraceae: Anthemideae: Santolininae) Based on Morphological Characteristics
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Genome-Wide Identification of NBS-Encoding Resistance
G C A T T A C G G C A T genes Article Genome-Wide Identification of NBS-Encoding Resistance Genes in Sunflower (Helianthus annuus L.) Surendra Neupane ID , Ethan J. Andersen, Achal Neupane ID and Madhav P. Nepal * ID Department of Biology and Microbiology, South Dakota State University, Brookings, SD 57007, USA; [email protected] (S.N.); [email protected] (E.J.A.); [email protected] (A.N.) * Correspondence: [email protected]; Tel.: +1-605-688-5971 Received: 31 May 2018; Accepted: 20 July 2018; Published: 30 July 2018 Abstract: Nucleotide Binding Site—Leucine-Rich Repeat (NBS-LRR) genes encode disease resistance proteins involved in plants’ defense against their pathogens. Although sunflower is affected by many diseases, only a few molecular details have been uncovered regarding pathogenesis and resistance mechanisms. Recent availability of sunflower whole genome sequences in publicly accessible databases allowed us to accomplish a genome-wide identification of Toll-interleukin-1 receptor-like Nucleotide-binding site Leucine-rich repeat (TNL), Coiled Coil (CC)-NBS-LRR (CNL), Resistance to powdery mildew8 (RPW8)-NBS-LRR (RNL) and NBS-LRR (NL) protein encoding genes. Hidden Markov Model (HMM) profiling of 52,243 putative protein sequences from sunflower resulted in 352 NBS-encoding genes, among which 100 genes belong to CNL group including 64 genes with RX_CC like domain, 77 to TNL, 13 to RNL, and 162 belong to NL group. We also identified signal peptides and nuclear localization signals present in the identified genes and their homologs. We found that NBS genes were located on all chromosomes and formed 75 gene clusters, one-third of which were located on chromosome 13. -
Proceedings Amurga Co
PROCEEDINGS OF THE AMURGA INTERNATIONAL CONFERENCES ON ISLAND BIODIVERSITY 2011 PROCEEDINGS OF THE AMURGA INTERNATIONAL CONFERENCES ON ISLAND BIODIVERSITY 2011 Coordination: Juli Caujapé-Castells Funded and edited by: Fundación Canaria Amurga Maspalomas Colaboration: Faro Media Cover design & layout: Estudio Creativo Javier Ojeda © Fundación Canaria Amurga Maspalomas Gran Canaria, December 2013 ISBN: 978-84-616-7394-0 How to cite this volume: Caujapé-Castells J, Nieto Feliner G, Fernández Palacios JM (eds.) (2013) Proceedings of the Amurga international conferences on island biodiversity 2011. Fundación Canaria Amurga-Maspalomas, Las Palmas de Gran Canaria, Spain. All rights reserved. Any unauthorized reprint or use of this material is prohibited. No part of this book may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage and retrieval system without express written permission from the author / publisher. SCIENTIFIC EDITORS Juli Caujapé-Castells Jardín Botánico Canario “Viera y Clavijo” - Unidad Asociada CSIC Consejería de Medio Ambiente y Emergencias, Cabildo de Gran Canaria Gonzalo Nieto Feliner Real Jardín Botánico de Madrid-CSIC José María Fernández Palacios Universidad de La Laguna SCIENTIFIC COMMITTEE Juli Caujapé-Castells, Gonzalo Nieto Feliner, David Bramwell, Águedo Marrero Rodríguez, Julia Pérez de Paz, Bernardo Navarro-Valdivielso, Ruth Jaén-Molina, Rosa Febles Hernández, Pablo Vargas. Isabel Sanmartín. ORGANIZING COMMITTEE Pedro -
State of New York City's Plants 2018
STATE OF NEW YORK CITY’S PLANTS 2018 Daniel Atha & Brian Boom © 2018 The New York Botanical Garden All rights reserved ISBN 978-0-89327-955-4 Center for Conservation Strategy The New York Botanical Garden 2900 Southern Boulevard Bronx, NY 10458 All photos NYBG staff Citation: Atha, D. and B. Boom. 2018. State of New York City’s Plants 2018. Center for Conservation Strategy. The New York Botanical Garden, Bronx, NY. 132 pp. STATE OF NEW YORK CITY’S PLANTS 2018 4 EXECUTIVE SUMMARY 6 INTRODUCTION 10 DOCUMENTING THE CITY’S PLANTS 10 The Flora of New York City 11 Rare Species 14 Focus on Specific Area 16 Botanical Spectacle: Summer Snow 18 CITIZEN SCIENCE 20 THREATS TO THE CITY’S PLANTS 24 NEW YORK STATE PROHIBITED AND REGULATED INVASIVE SPECIES FOUND IN NEW YORK CITY 26 LOOKING AHEAD 27 CONTRIBUTORS AND ACKNOWLEGMENTS 30 LITERATURE CITED 31 APPENDIX Checklist of the Spontaneous Vascular Plants of New York City 32 Ferns and Fern Allies 35 Gymnosperms 36 Nymphaeales and Magnoliids 37 Monocots 67 Dicots 3 EXECUTIVE SUMMARY This report, State of New York City’s Plants 2018, is the first rankings of rare, threatened, endangered, and extinct species of what is envisioned by the Center for Conservation Strategy known from New York City, and based on this compilation of The New York Botanical Garden as annual updates thirteen percent of the City’s flora is imperiled or extinct in New summarizing the status of the spontaneous plant species of the York City. five boroughs of New York City. This year’s report deals with the City’s vascular plants (ferns and fern allies, gymnosperms, We have begun the process of assessing conservation status and flowering plants), but in the future it is planned to phase in at the local level for all species. -
Wild Helianthus Anomalus and H. Deserticola from the Desert Southwest USA: a Potential Source of Stress Genes for Cultivated Sunflower
Wild Helianthus anomalus and H. deserticola from the Desert Southwest USA: a Potential Source of Stress Genes for Cultivated Sunflower Gerald J. Seiler U.S. Department of Agriculture, Agricultural Research Service, Northern Crop Science Laboratory, Fargo, North Dakota USA 58105 www.fargo.ars.usda.gov Email [email protected] Abstract The narrow genetic base of cultivated sunflower has been broadened by the infusion of genes from wild species, which continue to be a valuable source of desirable agronomic traits. Helianthus anomalus Blake is a wild annual species adapted to sandy dunes of the southwest USA. Helianthus deserticola Heiser is another wild annual species adapted to high desert areas of the same region. The adaptation of these species to harsh habitats makes them potential candidates for improving stress tolerance in the cultivated sunflower crop. Since seed of these species was not available in the USDA-ARS Sunflower Germplasm Collection, an exploration was undertaken in September, 2000 to collect populations for future research. Due to the extremely dry weather in 2000, only two populations of H. anomalus and one H. deserticola were collected. These collections are the first populations of these species added to the sunflower collection in over 20 years. Future research calls for introgression of the wild species into cultivated sunflower and evaluating the progeny for ecophysiological characteristics. Media summary Wild annual sunflowers from the southwestern deserts of the USA have the potential to improve stress tolerance in cultivated sunflower. Key Words Exploration, drought, ecophysiological, germplasm, genetic diversity. Introduction The genus Helianthus is comprised of 51 species with 14 annual and 37 perennial, all native to North America. -
Southwestern Rare and Endangered Plants
The Importance of Competition in the Isolation and Establishment of Helianthus Paradoxus (Asteraceae) 1 OSCAR W. VAN AUKEN AND JANIS. K. BUSH Department of Earth and Environmental Sciences, University of Texas at San Antonio, San Antonio, TX 78249 1Author for correspondence and reprints. FAX 210-458-5658; E-mail [email protected] ABSTRACT: Helianthus paradoxus (the Pecos or puzzle sunflower) is a threatened, federally listed annual species that is found in a few locations in west Texas and New Mexico. Two greenhouse experiments were conducted to evaluate the ability of H. paradoxus to compete with its progenitors and a with potential ecosystem competitor, Distichlis spicata (saltgrass) in simulated salt marsh and non-salt marsh environments. The results were usually dependent on soil salinity. Helianthus paradoxus was the better competitor in high saline soil and its progenitor H. annuus (common sunflower) was the better competitor in low saline soil. However, H. paradoxus was the better competitor in both high and low saline soils when compared to it progenitor H. petiolaris (plains sunflower) and to D. spicata, an ecosystem competitor. The ability of H. paradoxus to tolerate higher saline conditions, and perhaps even restrict the more geographically widespread H. annuus in saline soils may have allowed H. paradoxus to establish, become genetically isolated and survive as a species in inland salt marshes. Data presented here indicate that while H. paradoxus can grow in low saline soil, interference from H. annuus in low saline soils could restrict H. paradoxus to saline environments within salt marshes. The ability of H. paradoxus to out-compete D. -
Functional Ecology Published by John Wiley & Sons Ltd on Behalf of British Ecological Society
Received: 22 June 2017 | Accepted: 14 February 2018 DOI: 10.1111/1365-2435.13085 RESEARCH ARTICLE Insular woody daisies (Argyranthemum, Asteraceae) are more resistant to drought- induced hydraulic failure than their herbaceous relatives Larissa C. Dória1 | Diego S. Podadera2 | Marcelino del Arco3 | Thibaud Chauvin4,5 | Erik Smets1 | Sylvain Delzon6 | Frederic Lens1 1Naturalis Biodiversity Center, Leiden University, Leiden, The Netherlands; 2Programa de Pós-Graduação em Ecologia, UNICAMP, Campinas, São Paulo, Brazil; 3Department of Plant Biology (Botany), La Laguna University, La Laguna, Tenerife, Spain; 4PIAF, INRA, University of Clermont Auvergne, Clermont-Ferrand, France; 5AGPF, INRA Orléans, Olivet Cedex, France and 6BIOGECO INRA, University of Bordeaux, Cestas, France Correspondence Frederic Lens Abstract Email: [email protected] 1. Insular woodiness refers to the evolutionary transition from herbaceousness to- Funding information wards derived woodiness on (sub)tropical islands and leads to island floras that have Conselho Nacional de Desenvolvimento a higher proportion of woody species compared to floras of nearby continents. Científico e Tecnológico, Grant/Award Number: 206433/2014-0; French National 2. Several hypotheses have tried to explain insular woodiness since Darwin’s original Agency for Research, Grant/Award Number: observations, but experimental evidence why plants became woody on islands is ANR-10-EQPX-16 and ANR-10-LABX-45; Alberta Mennega Stichting scarce at best. 3. Here, we combine experimental measurements of hydraulic failure in stems (as a Handling Editor: Rafael Oliveira proxy for drought stress resistance) with stem anatomical observations in the daisy lineage (Asteraceae), including insular woody Argyranthemum species from the Canary Islands and their herbaceous continental relatives. 4. Our results show that stems of insular woody daisies are more resistant to drought- induced hydraulic failure than the stems of their herbaceous counterparts. -
Bio 308-Course Guide
COURSE GUIDE BIO 308 BIOGEOGRAPHY Course Team Dr. Kelechi L. Njoku (Course Developer/Writer) Professor A. Adebanjo (Programme Leader)- NOUN Abiodun E. Adams (Course Coordinator)-NOUN NATIONAL OPEN UNIVERSITY OF NIGERIA BIO 308 COURSE GUIDE National Open University of Nigeria Headquarters 14/16 Ahmadu Bello Way Victoria Island Lagos Abuja Office No. 5 Dar es Salaam Street Off Aminu Kano Crescent Wuse II, Abuja e-mail: [email protected] URL: www.nou.edu.ng Published by National Open University of Nigeria Printed 2013 ISBN: 978-058-434-X All Rights Reserved Printed by: ii BIO 308 COURSE GUIDE CONTENTS PAGE Introduction ……………………………………......................... iv What you will Learn from this Course …………………............ iv Course Aims ……………………………………………............ iv Course Objectives …………………………………………....... iv Working through this Course …………………………….......... v Course Materials ………………………………………….......... v Study Units ………………………………………………......... v Textbooks and References ………………………………........... vi Assessment ……………………………………………….......... vi End of Course Examination and Grading..................................... vi Course Marking Scheme................................................................ vii Presentation Schedule.................................................................... vii Tutor-Marked Assignment ……………………………….......... vii Tutors and Tutorials....................................................................... viii iii BIO 308 COURSE GUIDE INTRODUCTION BIO 308: Biogeography is a one-semester, 2 credit- hour course in Biology. It is a 300 level, second semester undergraduate course offered to students admitted in the School of Science and Technology, School of Education who are offering Biology or related programmes. The course guide tells you briefly what the course is all about, what course materials you will be using and how you can work your way through these materials. It gives you some guidance on your Tutor- Marked Assignments. There are Self-Assessment Exercises within the body of a unit and/or at the end of each unit. -
Hymenoptera, Vespidae, Masarinae) in Morocco
Research Collection Journal Article Flower associations and nesting of the pollen wasp Quartinia major Kohl, 1898 (Hymenoptera, Vespidae, Masarinae) in Morocco Author(s): Mauss, Volker; Müller, Andreas; Prosi, Rainer Publication Date: 2018 Permanent Link: https://doi.org/10.3929/ethz-b-000249947 Originally published in: Journal of Hymenoptera Research 62, http://doi.org/10.3897/jhr.62.22879 Rights / License: Creative Commons Attribution 4.0 International This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library JHR 62: 15–31Flower (2018) associations and nesting of the pollen wasp Quartinia major Kohl, 1898... 15 doi: 10.3897/jhr.62.22879 RESEARCH ARTICLE http://jhr.pensoft.net Flower associations and nesting of the pollen wasp Quartinia major Kohl, 1898 (Hymenoptera, Vespidae, Masarinae) in Morocco Volker Mauss1, Andreas Müller2, Rainer Prosi3 1 Staatliches Museum für Naturkunde, Abt. Entomologie, Rosenstein 1, D-70191 Stuttgart, Germany 2 ETH Zürich, Institute of Agricultural Sciences, Biocommunication and Entomology, Schmelzbergstraße 9/LFO, CH-8092 Zürich, Switzerland 3 Lerchenstraße 81, D-74564 Crailsheim, Germany Corresponding author: Volker Mauss ([email protected]) Academic editor: J. Neff | Received 9 December 2017 | Accepted 4 January 2018 | Published 26 February 2018 http://zoobank.org/426192A5-7E3A-46CD-9CDF-48A8FBD63AC5 Citation: Mauss V, Müller A, Prosi R (2018) Flower associations and nesting of the pollen wasp Quartinia major Kohl, 1898 (Hymenoptera, Vespidae, Masarinae) in Morocco. Journal of Hymenoptera Research 62: 15–31. https://doi. org/10.3897/jhr.62.22879 Abstract Females of Quartinia major Kohl were observed to visit flowers of Pulicaria mauritanica Batt., Cladanthus arabicus (L.) Cass. -
Doctorat De L'université De Toulouse
En vue de l’obt ention du DOCTORAT DE L’UNIVERSITÉ DE TOULOUSE Délivré par : Université Toulouse 3 Paul Sabatier (UT3 Paul Sabatier) Discipline ou spécialité : Ecologie, Biodiversité et Evolution Présentée et soutenue par : Joeri STRIJK le : 12 / 02 / 2010 Titre : Species diversification and differentiation in the Madagascar and Indian Ocean Islands Biodiversity Hotspot JURY Jérôme CHAVE, Directeur de Recherches CNRS Toulouse Emmanuel DOUZERY, Professeur à l'Université de Montpellier II Porter LOWRY II, Curator Missouri Botanical Garden Frédéric MEDAIL, Professeur à l'Université Paul Cezanne Aix-Marseille Christophe THEBAUD, Professeur à l'Université Paul Sabatier Ecole doctorale : Sciences Ecologiques, Vétérinaires, Agronomiques et Bioingénieries (SEVAB) Unité de recherche : UMR 5174 CNRS-UPS Evolution & Diversité Biologique Directeur(s) de Thèse : Christophe THEBAUD Rapporteurs : Emmanuel DOUZERY, Professeur à l'Université de Montpellier II Porter LOWRY II, Curator Missouri Botanical Garden Contents. CONTENTS CHAPTER 1. General Introduction 2 PART I: ASTERACEAE CHAPTER 2. Multiple evolutionary radiations and phenotypic convergence in polyphyletic Indian Ocean Daisy Trees (Psiadia, Asteraceae) (in preparation for BMC Evolutionary Biology) 14 CHAPTER 3. Taxonomic rearrangements within Indian Ocean Daisy Trees (Psiadia, Asteraceae) and the resurrection of Frappieria (in preparation for Taxon) 34 PART II: MYRSINACEAE CHAPTER 4. Phylogenetics of the Mascarene endemic genus Badula relative to its Madagascan ally Oncostemum (Myrsinaceae) (accepted in Botanical Journal of the Linnean Society) 43 CHAPTER 5. Timing and tempo of evolutionary diversification in Myrsinaceae: Badula and Oncostemum in the Indian Ocean Island Biodiversity Hotspot (in preparation for BMC Evolutionary Biology) 54 PART III: MONIMIACEAE CHAPTER 6. Biogeography of the Monimiaceae (Laurales): a role for East Gondwana and long distance dispersal, but not West Gondwana (accepted in Journal of Biogeography) 72 CHAPTER 7 General Discussion 86 REFERENCES 91 i Contents. -
Santolina Ageratifolia Barnades Ex Asso (Compositae) Y El Agregado S
SANTOLINA AGERATIFOLIA BARNADES EX ASSO (COMPOSITAE) Y EL AGREGADO S. ROSMARINIFOLIA L. por SILVIA LÓPEZ UDIAS, CARLOS FABREGAT & GONZALO MATEO* Resumen LÓPEZ UDIAS, S., C. FABREGAT & G. MATEO (1997). Santolina ageratifolia Bamades ex Asso (Compositae) y el agregado S. rosmarinifolia L. Anales Jard. Bot. Madrid 55(2): 285-296. Se reivindica Santolina ageratifolia Bamades ex Asso como especie bien caracterizada dentro del agregado S. rosmarinifolia L. Se resume su historia taxonómica, se detallan los caracteres diagnósticos que la diferencian de las demás especies del grupo y se indica la corología deta llada de la misma. Asimismo se aclaran algunos puntos confusos relativos a la taxonomía y co rología en España de las restantes especies del agregado (S. rosmarinifolia L. s. str., S. canes cens Lag., S. pectinata Lag. y S. semidentata Hoffmanns. & Link) y se propone la siguiente combinación nueva: S. semidentata subsp. melidensis (Rodríguez-Oubiña & Ortiz) López Udias, Fabregat & Mateo. Palabras clave: Compositae, Santolina, historia, taxonomía, corología, España. Abstract LÓPEZ UDIAS, S., C. FABREGAT & G. MATEO (1997). Santolina ageratifolia Bamades ex Asso (Compositae) and their relationships with S. rosmarinifolia L. Anales Jard. Bot. Madrid 55(2): 285-296 (in Spanish). The status of Santolina ageratifolia Bamades ex Asso as a distinct species belonging to S. ros marinifolia L. aggr. is vindicated. An historical approach, a revisión of the diagnostic characters and a detailed chorology of the species in Spain is presented. Likewise, some doubtful questions conceming taxonomy and chorology in Spain of the whole aggregate (including S. rosmarinifolia L. s. str., S. canescens Lag., S. pectinata Lag. and S. -
Lntrogression and Its Consequences in Plants Loren H
Botany Publication and Papers Botany 1993 lntrogression and Its Consequences in Plants Loren H. Rieseberg Rancho Santa Ana Botanic Garden Jonathan F. Wendel Iowa State University, [email protected] Follow this and additional works at: http://lib.dr.iastate.edu/bot_pubs Part of the Botany Commons, Evolution Commons, and the Plant Breeding and Genetics Commons Recommended Citation Rieseberg, Loren H. and Wendel, Jonathan F., "lntrogression and Its Consequences in Plants" (1993). Botany Publication and Papers. 8. http://lib.dr.iastate.edu/bot_pubs/8 This Book Chapter is brought to you for free and open access by the Botany at Iowa State University Digital Repository. It has been accepted for inclusion in Botany Publication and Papers by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. lntrogression and Its Consequences in Plants Abstract The or le of introgression in plant evolution has been the subject of considerable discussion since the publication of Anderson's influential monograph, Introgressive Hybridization (Anderson, 1949). Anderson promoted the view, since widely held by botanists, that interspecific transfer of genes is a potent evolutionary force. He suggested that "the raw material for evolution brought about by introgression must greatly exceed the new genes produced directly by mutation" ( 1949, p. 102) and reasoned, as have many subsequent authors, that the resulting increases in genetic diversity and number of genetic combinations promote the development or acquisition of novel adaptations (Anderson, 1949, 1953; Stebbins, 1959; Rattenbury, 1962; Lewontin and Birch, 1966; Raven, 1976; Grant, 1981 ). In contrast to this "adaptationist" perspective, others have accorded little ve olutionary significance to introgression, suggesting instead that it should be considered a primarily local phenomenon with only transient effects, a kind of"evolutionary noise" (Barber and Jackson, 1957; Randolph et al., 1967; Wagner, 1969, 1970; Hardin, 1975). -
Skillins Greenhouse Green Lavender Cotton
Garden and Landscape Plant Finder Green Lavender Cotton Santolina rosmarinifolia Height: 30 inches Spread: 24 inches Sunlight: Hardiness Zone: 5b Other Names: Green Santolina, Holy Flax, syn. Santolina virens Green Lavender Cotton Photo courtesy of NetPS Plant Finder Description: This beautifully fine textured variety produces luminous green foliage, and bright yellow button flowers in summer; traditionally used as a low hedge in herb gardens; perfect accent in the rock garden or borders Ornamental Features Green Lavender Cotton features showy spikes of lightly-scented yellow button flowers at the ends of the branches from early to mid summer. The flowers are excellent for cutting. It has attractive green foliage. The fragrant narrow leaves are highly ornamental and remain green throughout the winter. The fruit is not ornamentally significant. Landscape Attributes Green Lavender Cotton is a dense multi-stemmed evergreen shrub with a mounded form. It lends an extremely fine and delicate texture to the landscape Green Lavender Cotton foliage composition which should be used to full effect. Photo courtesy of NetPS Plant Finder This shrub will require occasional maintenance and upkeep, and should only be pruned after flowering to avoid removing any of the current season's flowers. It is a good choice for attracting butterflies to your yard, but is not particularly attractive to deer who tend to leave it alone in favor of tastier treats. It has no significant negative characteristics. BRUNSWICK FALMOUTH CUMBERLAND 422 Bath Road 89 Foreside Road 201 Gray Rd (Route 100) Brunswick, ME 04011 Falmouth, ME 04105 Cumberland, ME 04021 1-800-339-8111 1-800-244-3860 1-800-348-8498 207-442-8111 207-781-3860 207-829-5619 Garden and Landscape Plant Finder Green Lavender Cotton is recommended for the following landscape applications; - Mass Planting - Rock/Alpine Gardens - Border Edging - General Garden Use - Groundcover - Container Planting Planting & Growing Green Lavender Cotton will grow to be about 24 inches tall at maturity, with a spread of 24 inches.