Severe Apicomplexan Infection in the Oyster Ostrea Chilensis: a Possible Predisposing Factor in Bonamiosis
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Эволюционные Усложнения Жизненных Циклов Кокцидий (Sporozoa: Coccidea)
ПАРАЗИТОЛОГИЯ, 38, 6, 2004 УДК 576.8.192.1 ЭВОЛЮЦИОННЫЕ УСЛОЖНЕНИЯ ЖИЗНЕННЫХ циклов КОКЦИДИЙ (SPOROZOA: COCCIDEA) © М. В. Крылов, Л. М. Белова Сходные стратегии сохранения вида сформировались независимо и в разное вре- мя у различных групп кокцидий. Полиэнергидные ооцисты и тканевые цисты обна- ружены у представителей отрядов Protococcidiida и Eimeriida. Гипнозоиты найдены у Karyolysus lacerate и Plasmodium vivax, трансовариальная передача паразитов осущест- вляется в жизненных циклах кокцидий родов Karyolysus и Babesia. Становление гете- роксенности у разных групп кокцидий проходило по-разному и в разное время. В од- них группах — Cystoisospora, Toxoplasma, Aggregata, Atoxoplasma, Schelackia, Lankesterel- la, Calyptospora первичными были окончательные хозяева в других же — Sarcocystis, Karyolysus, Haemogregarina, Hepalozoon, Plasmodium, Haemoproteus, Leucocytozoon, Babe- siosoma, Theileria, Babesia ими были промежуточные хозяева. Тип Sporozoa включает в себя класс Coccidea, всех представителей этого класса мы называем кокцидиями. Систематика кокцидий построена на осо- бенностях их морфологии и жизненных циклов. При анализе эволюционных изменений жизненных циклов кокцидий мы пользовались следующей системой. Тип Sporozoa Leuckart, 1879. Класс Coccidea Leuckart, 1879. Диагноз. Паразиты беспозвоночных и позвоночных; гаметогенез обычно протекает в разных клетках и по-разному у мужских и женских гамонтов; один макрогамонт формирует одну макрогамету; один микрогамонт образу- ет несколько (много) микрогамет; характерна оогамия; сизигий обычно -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Symbiodinium Genomes Reveal Adaptive Evolution of Functions Related to Symbiosis
bioRxiv preprint doi: https://doi.org/10.1101/198762; this version posted October 5, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Article 2 Symbiodinium genomes reveal adaptive evolution of 3 functions related to symbiosis 4 Huanle Liu1, Timothy G. Stephens1, Raúl A. González-Pech1, Victor H. Beltran2, Bruno 5 Lapeyre3,4, Pim Bongaerts5, Ira Cooke3, David G. Bourne2,6, Sylvain Forêt7,*, David J. 6 Miller3, Madeleine J. H. van Oppen2,8, Christian R. Voolstra9, Mark A. Ragan1 and Cheong 7 Xin Chan1,10,† 8 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, 9 Australia 10 2Australian Institute of Marine Science, Townsville, QLD 4810, Australia 11 3ARC Centre of Excellence for Coral Reef Studies and Department of Molecular and Cell 12 Biology, James Cook University, Townsville, QLD 4811, Australia 13 4Laboratoire d’excellence CORAIL, Centre de Recherches Insulaires et Observatoire de 14 l’Environnement, Moorea 98729, French Polynesia 15 5Global Change Institute, The University of Queensland, Brisbane, QLD 4072, Australia 16 6College of Science and Engineering, James Cook University, Townsville, QLD 4811, 17 Australia 18 7Research School of Biology, Australian National University, Canberra, ACT 2601, Australia 19 8School of BioSciences, The University of Melbourne, VIC 3010, Australia 1 bioRxiv preprint doi: https://doi.org/10.1101/198762; this version posted October 5, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Structure of Protistan Parasites Found in Bivalve Molluscs
W&M ScholarWorks VIMS Books and Book Chapters Virginia Institute of Marine Science 1988 Structure of Protistan Parasites Found in Bivalve Molluscs Frank O. Perkins Follow this and additional works at: https://scholarworks.wm.edu/vimsbooks Part of the Marine Biology Commons, and the Parasitology Commons American Fisheries Society Special Publication 18:93- 111 , 1988 CC> Copyrighl by !he American Fisheries Sociely 1988 PARASITE MORPHOLOGY, STRATEGY, AND EVOLUTION Structure of Protistan Parasites Found in Bivalve Molluscs 1 FRANK 0. PERKINS Virginia In stitute of Marine Science. School of Marine Science, College of William and Mary Gloucester Point, Virginia 23062, USA Abstral'I.-The literature on the structure of protists parasitizing bivalve molluscs is reviewed, and previously unpubli shed observations of species of class Perkinsea, phylum Haplosporidia, and class Paramyxea are presented. Descriptions are given of the flagellar apparatus of Perkin.His marinus zoospores, the ultrastructure of Perkinsus sp. from the Baltic macoma Maconw balthica, and the development of haplosporosome-like bodies in Haplosporidium nelsoni. The possible origin of stem cells of Marreilia sydneyi from the inner two sporoplasms is discussed. New research efforts are suggested which could help elucidate the phylogenetic interrelationships and taxonomic positions of the various taxa and help in efforts to better understand life cycles of selected species. Studies of the structure of protistan parasites terization of the parasite species, to elucidation of found in bivalve moll uscs have been fruitful to the many parasite life cycles, and to knowledge of morphologist interested in comparative morphol- parasite metabolism. The latter, especially, is ogy, evolu tion, and taxonomy. -
Drawing the Tree of Eukaryotic Life Based on the Analysis of 2,269 Comment Manually Annotated Myosins from 328 Species Florian Odronitz and Martin Kollmar
Open Access Research2007OdronitzVolume 8, and Issue Kollmar 9, Article R196 Drawing the tree of eukaryotic life based on the analysis of 2,269 comment manually annotated myosins from 328 species Florian Odronitz and Martin Kollmar Address: Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg, 37077 Goettingen, Germany. Correspondence: Martin Kollmar. Email: [email protected] reviews Published: 18 September 2007 Received: 6 March 2007 Revised: 17 September 2007 Genome Biology 2007, 8:R196 (doi:10.1186/gb-2007-8-9-r196) Accepted: 18 September 2007 The electronic version of this article is the complete one and can be found online at http://genomebiology.com/2007/8/9/R196 © 2007 Odronitz and Kollmar; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which reports permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The<p>Thesome eukaryotic accepted tree of relationshipstreeeukaryotic of life life of was major reconstr taxa anducted resolving based on disputed the analysis and preliminary of 2,269 myosin classifications.</p> motor domains from 328 organisms, confirming Abstract deposited research Background: The evolutionary history of organisms is expressed in phylogenetic trees. The most widely used phylogenetic trees describing the evolution of all organisms have been constructed based on single-gene phylogenies that, however, often produce conflicting results. Incongruence between phylogenetic trees can result from the violation of the orthology assumption and stochastic and systematic errors. Results: Here, we have reconstructed the tree of eukaryotic life based on the analysis of 2,269 myosin motor domains from 328 organisms. -
Symbiodinium Genomes Reveal Adaptive Evolution of Functions Related to Coral-Dinoflagellate Symbiosis
Corrected: Publisher correction ARTICLE DOI: 10.1038/s42003-018-0098-3 OPEN Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis Huanle Liu1, Timothy G. Stephens1, Raúl A. González-Pech1, Victor H. Beltran2, Bruno Lapeyre3,4,12, Pim Bongaerts5,6, Ira Cooke4, Manuel Aranda7, David G. Bourne2,8, Sylvain Forêt3,9, David J. Miller3,4, Madeleine J.H. van Oppen2,10, Christian R. Voolstra7, Mark A. Ragan1 & Cheong Xin Chan1,11 1234567890():,; Symbiosis between dinoflagellates of the genus Symbiodinium and reef-building corals forms the trophic foundation of the world’s coral reef ecosystems. Here we present the first draft genome of Symbiodinium goreaui (Clade C, type C1: 1.03 Gbp), one of the most ubiquitous endosymbionts associated with corals, and an improved draft genome of Symbiodinium kawagutii (Clade F, strain CS-156: 1.05 Gbp) to further elucidate genomic signatures of this symbiosis. Comparative analysis of four available Symbiodinium genomes against other dinoflagellate genomes led to the identification of 2460 nuclear gene families (containing 5% of Symbiodinium genes) that show evidence of positive selection, including genes involved in photosynthesis, transmembrane ion transport, synthesis and modification of amino acids and glycoproteins, and stress response. Further, we identify extensive sets of genes for meiosis and response to light stress. These draft genomes provide a foundational resource for advancing our understanding of Symbiodinium biology and the coral-algal symbiosis. 1 Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia. 2 Australian Institute of Marine Science, Townsville, QLD 4810, Australia. 3 ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD 4811, Australia. -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene
Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene Zhiling Guo1,2, Sheng Liu1, Simin Hu1, Tao Li1, Yousong Huang4, Guangxing Liu4, Huan Zhang2,4*, Senjie Lin2,3* 1 Key Laboratory of Marine Bio-resources Sustainable Utilization, South China Sea Institute of Oceanology, Chinese Academy of Science, Guangzhou, Guangdong, China, 2 Department of Marine Sciences, University of Connecticut, Groton, Connecticut, United States of America, 3 Marine Biodiversity and Global Change Laboratory, Xiamen University, Xiamen, Fujian, China, 4 Department of Environmental Science, Ocean University of China, Qingdao, Shandong, China Abstract Toward understanding the genetic diversity and distribution of copepod-associated symbiotic ciliates and the evolutionary relationships with their hosts in the marine environment, we developed a small subunit ribosomal RNA gene (18S rDNA)- based molecular method and investigated the genetic diversity and genotype distribution of the symbiotic ciliates on copepods. Of the 10 copepod species representing six families collected from six locations of Pacific and Atlantic Oceans, 9 were found to harbor ciliate symbionts. Phylogenetic analysis of the 391 ciliate 18S rDNA sequences obtained revealed seven groups (ribogroups), six (containing 99% of all the sequences) belonging to subclass Apostomatida, the other clustered with peritrich ciliate Vorticella gracilis. Among the Apostomatida groups, Group III were essentially identical to Vampyrophrya pelagica, and the other five groups represented the undocumented ciliates that were close to Vampyrophrya/ Gymnodinioides/Hyalophysa. Group VI ciliates were found in all copepod species but one (Calanus sinicus), and were most abundant among all ciliate sequences obtained, indicating that they are the dominant symbiotic ciliates universally associated with copepods. -
Assessment of the Cell Viability of Cultured Perkinsus Marinus
J. Eukaryot. Microbiol., 52(6), 2005 pp. 492–499 r 2005 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2005.00058.x Assessment of the Cell Viability of Cultured Perkinsus marinus (Perkinsea), a Parasitic Protozoan of the Eastern Oyster, Crassostrea virginica, Using SYBRgreen–Propidium Iodide Double Staining and Flow Cytometry PHILIPPE SOUDANT,a,1 FU-LIN E. CHUb and ERIC D. LUNDb aLEMAR, UMR 6539, IUEM-UBO, Technopole Brest-Iroise, Place Nicolas Copernic, 29280 Plouzane´, France, and bVirginia Institute of Marine Science, College of William and Mary, Gloucester Point, Virginia 23062, USA ABSTRACT. A flow cytometry (FCM) assay using SYBRgreen and propidium iodide double staining was tested to assess viability and morphological parameters of Perkinsus marinus under different cold- and heat-shock treatments and at different growth phases. P. mari- nus meront cells, cultivated at 28 1C, were incubated in triplicate for 30 min at À 80 1C, À 20 1C, 5 1C, and 20 1C for cold-shock treatments and at 32 1C, 36 1C, 40 1C, 44 1C, 48 1C, 52 1C, and 60 1C for heat-shock treatments. A slight and significant decrease in percentage of viable cells (PVC), from 93.6% to 92.7%, was observed at À 20 1C and the lowest PVC was obtained at À 80 1C (54.0%). After 30 min of heat shocks at 40 1C and 44 1C, PVC decreased slightly but significantly compared to cells maintained at 28 1C. When cells were heat shocked at 48 1C, 52 1C, and 60 1C heavy mortality occurred and PVC decreased to 33.8%, 8.0%, and 3.4%, respectively. -
Aquatic Microbial Ecology 79:1
Vol. 79: 1–12, 2017 AQUATIC MICROBIAL ECOLOGY Published online March 28 https://doi.org/10.3354/ame01811 Aquat Microb Ecol Contribution to AME Special 6 ‘SAME 14: progress and perspectives in aquatic microbial ecology’ OPENPEN ACCESSCCESS REVIEW Exploring the oceanic microeukaryotic interactome with metaomics approaches Anders K. Krabberød1, Marit F. M. Bjorbækmo1, Kamran Shalchian-Tabrizi1, Ramiro Logares2,1,* 1University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, 0316 Oslo, Norway 2Institute of Marine Sciences (ICM), CSIC, Passeig Marítim de la Barceloneta, Barcelona, Spain ABSTRACT: Biological communities are systems composed of many interacting parts (species, populations or single cells) that in combination constitute the functional basis of the biosphere. Animal and plant ecologists have advanced substantially our understanding of ecological inter- actions. In contrast, our knowledge of ecological interaction in microbes is still rudimentary. This represents a major knowledge gap, as microbes are key players in almost all ecosystems, particu- larly in the oceans. Several studies still pool together widely different marine microbes into broad functional categories (e.g. grazers) and therefore overlook fine-grained species/population-spe- cific interactions. Increasing our understanding of ecological interactions is particularly needed for oceanic microeukaryotes, which include a large diversity of poorly understood symbiotic rela- tionships that range from mutualistic to parasitic. The reason for the current state of affairs is that determining ecological interactions between microbes has proven to be highly challenging. How- ever, recent technological developments in genomics and transcriptomics (metaomics for short), coupled with microfluidics and high-performance computing are making it increasingly feasible to determine ecological interactions at the microscale. -
Occurrence of Parasites and Diseases in Oysters and Mussels of U.S. Coastal Waters National Status and Trends, the Mussel Watch Monitoring Program
Occurrence of Parasites and Diseases in Oysters and Mussels of U.S. Coastal Waters National Status and Trends, the Mussel Watch Monitoring Program NOAA National Centers for Coastal Ocean Science Center for Coastal Monitoring and Assessment D. A. Apeti Y. Kim G.G. Lauenstein J. Tull R. Warner March 2014 NOAA TECHNICAL MEMO RANDUM NOS NCCOS 182 NOAA NCCOS Center for Coastal Monitoring and Assessment CITATION Apeti, D.A., Y. Kim, G. Lauenstein, J. Tull, and R. Warner. 2014. Occurrence of Parasites and Diseases in Oys ters and Mussels of the U.S. Coastal Waters. National Status and Trends, the Mussel Watch monitoring program. NOAA Technical Memorandum NOSS/NCCOS 182. Silver Spring, MD 51 pp. ACKNOWLEDGEMENTS The authors would like to acknowledge Juan Ramirez of TDI-Brooks International Inc., and David Busheck and Emily Scarpa of Rutgers University Haskin Shellfish Laboratory for a decade of analystical effort in providing the Mussel Watch histopathology data. We also wish to thank reviewer Kevin McMahon for in valuable assistance in making this document a superior product than what we had initially envisioned. Mention of trade names or commercial products does not constitute endorsement or recommendation for their use by the United States Government Occurrence of Parasites and Diseases in Oysters and Mussels of the U.S. Coastal Waters. National Status and Trends, the Mussel Watch MonitoringProgram. Center for Coastal Monitoring and Assessment (CCMA) National Centers for Coastal Ocean Science (NCCOS) National Ocean Service (NOS) National -
Molecular Phylogeny and Surface Morphology of Colpodella Edax (Alveolata): Insights Into the Phagotrophic Ancestry of Apicomplexans
J. Eukaryot. Microbiol., 50(5), 2003 pp. 334±340 q 2003 by the Society of Protozoologists Molecular Phylogeny and Surface Morphology of Colpodella edax (Alveolata): Insights into the Phagotrophic Ancestry of Apicomplexans BRIAN S. LEANDER,a OLGA N. KUVARDINA,b VLADIMIR V. ALESHIN,b ALEXANDER P. MYLNIKOVc and PATRICK J. KEELINGa aCanadian Institute for Advanced Research, Program in Evolutionary Biology, Department of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and bDepartments of Evolutionary Biochemistry and Invertebrate Zoology, Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119 992, Russian Federation, and cInstitute for the Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavskaya oblast, 152742, Russian Federation ABSTRACT. The molecular phylogeny of colpodellids provides a framework for inferences about the earliest stages in apicomplexan evolution and the characteristics of the last common ancestor of apicomplexans and dino¯agellates. We extended this research by presenting phylogenetic analyses of small subunit rRNA gene sequences from Colpodella edax and three unidenti®ed eukaryotes published from molecular phylogenetic surveys of anoxic environments. Phylogenetic analyses consistently showed C. edax and the environmental sequences nested within a colpodellid clade, which formed the sister group to (eu)apicomplexans. We also presented surface details of C. edax using scanning electron microscopy in order to supplement previous ultrastructural investigations of this species using transmission electron microscopy and to provide morphological context for interpreting environmental sequences. The microscopical data con®rmed a sparse distribution of micropores, an amphiesma consisting of small polygonal alveoli, ¯agellar hairs on the anterior ¯agellum, and a rostrum molded by the underlying (open-sided) conoid.