NOAA Technical Report NMFS SSRF-738
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Long Island Sound Habitat Restoration Initiative
LONG ISLAND SOUND HABITAT RESTORATION INITIATIVE Technical Support for Coastal Habitat Restoration FEBRUARY 2003 TABLE OF CONTENTS TABLE OF CONTENTS INTRODUCTION ....................................................................i GUIDING PRINCIPLES.................................................................................. ii PROJECT BOUNDARY.................................................................................. iv SITE IDENTIFICATION AND RANKING........................................................... iv LITERATURE CITED ..................................................................................... vi ACKNOWLEDGEMENTS............................................................................... vi APPENDIX I-A: RANKING CRITERIA .....................................................................I-A-1 SECTION 1: TIDAL WETLANDS ................................................1-1 DESCRIPTION ............................................................................................. 1-1 Salt Marshes ....................................................................................................1-1 Brackish Marshes .............................................................................................1-3 Tidal Fresh Marshes .........................................................................................1-4 VALUES AND FUNCTIONS ........................................................................... 1-4 STATUS AND TRENDS ................................................................................ -
Final Report
Developing Molecular Methods to Identify and Quantify Ballast Water Organisms: A Test Case with Cnidarians SERDP Project # CP-1251 Performing Organization: Brian R. Kreiser Department of Biological Sciences 118 College Drive #5018 University of Southern Mississippi Hattiesburg, MS 39406 601-266-6556 [email protected] Date: 4/15/04 Revision #: ?? Table of Contents Table of Contents i List of Acronyms ii List of Figures iv List of Tables vi Acknowledgements 1 Executive Summary 2 Background 2 Methods 2 Results 3 Conclusions 5 Transition Plan 5 Recommendations 6 Objective 7 Background 8 The Problem and Approach 8 Why cnidarians? 9 Indicators of ballast water exchange 9 Materials and Methods 11 Phase I. Specimens 11 DNA Isolation 11 Marker Identification 11 Taxa identifications 13 Phase II. Detection ability 13 Detection limits 14 Testing mixed samples 14 Phase III. 14 Results and Accomplishments 16 Phase I. Specimens 16 DNA Isolation 16 Marker Identification 16 Taxa identifications 17 i RFLPs of 16S rRNA 17 Phase II. Detection ability 18 Detection limits 19 Testing mixed samples 19 Phase III. DNA extractions 19 PCR results 20 Conclusions 21 Summary, utility and follow-on efforts 21 Economic feasibility 22 Transition plan 23 Recommendations 23 Literature Cited 24 Appendices A - Supporting Data 27 B - List of Technical Publications 50 ii List of Acronyms DGGE - denaturing gradient gel electrophoresis DMSO - dimethyl sulfoxide DNA - deoxyribonucleic acid ITS - internal transcribed spacer mtDNA - mitochondrial DNA PCR - polymerase chain reaction rRNA - ribosomal RNA - ribonucleic acid RFLPs - restriction fragment length polymorphisms SSCP - single strand conformation polymorphisms iii List of Figures Figure 1. Figure 1. -
Shallow Water As a Refuge Habitat for Fish and Crustaceans in Non-Vegetated Estuaries: an Example from Chesapeake Bay
MARINE ECOLOGY PROGRESS SERIES Vol. 99: 1-16, 1993 Published September 2 Mar. Ecol. Prog. Ser. l Shallow water as a refuge habitat for fish and crustaceans in non-vegetated estuaries: an example from Chesapeake Bay Gregory M. Ruiz l, Anson H. Hines l, Martin H. posey2 'Smithsonian Environmental Research Center, PO Box 28, Edgewater, Maryland 21037, USA 'Department of Biological Sciences, University of North Carolina at Wilmington, Wilmington, North Carolina 28403. USA ABSTRACT. Abundances and size-frequency distributions of common epibenth~cflsh and crustaceans were compared among 3 depth zones (1-35, 35-70, 71-95 cm) of the Rhode River, a subestuary of Chesapeake Bay, USA. In the absence of submerged aquatic vegetation (SAV),inter- and intraspccific size segregation occurred by depth from May to October, 1989-1992. Small species (Palaemonetes pugjo, Crangon septernspjnosa, Fundulus heteroclitus, F majaljs, Rhithropanope~lsharrisii, Apeltes quadracus, Gobiosorna boscj) were most abundant at water depths <70 cm. Furthermore, the propor- tion of small individuals decreased significantly with depth for 7 of 8 species, with C. septemsp~nosa being the exception, exhibiting no size change with increasing depth. These distributional patterns were related to depth-dependent predalion risk. Large species (Callinectes sap~dus,Leiostomus xan- thurus, and Micropogonias undulatus), known predators of some of the small species, were often most abundant in deep water (>70 cm). In field experiments, mortality of tethered P pugio (30 to 35 mm), small E heteroclitus (40 to 50 mm), and small C. sapjdus (30 to 70 mm) increased significantly with depth. Wc hypothesize that predation risk was size-dependent, creating the observed intra- and inter- specific size differences among depth zones. -
Marine Invertebrates in Tubes of Ceriantharia (Cnidaria: Anthozoa)
Biodiversity Data Journal 8: e47019 doi: 10.3897/BDJ.8.e47019 Research Article Knock knock, who’s there?: marine invertebrates in tubes of Ceriantharia (Cnidaria: Anthozoa) Hellen Ceriello‡,§, Celine S.S. Lopes‡,§, James Davis Reimer|, Torkild Bakken ¶, Marcelo V. Fukuda#, Carlo Magenta Cunha¤, Sérgio N. Stampar‡,§ ‡ Universidade Estadual Paulista "Júlio de Mesquita Filho" (UNESP), FCL, Assis, Brazil § Universidade Estadual Paulista "Júlio de Mesquita Filho" (UNESP), Instituto de Biociências, Botucatu, Brazil | University of the Ryukyus, Nishihara, Okinawa, Japan ¶ Norwegian University of Science and Technology, NTNU University Museum, Trondheim, Norway # Museu de Zoologia da Universidade de São Paulo (MZSP), São Paulo, Brazil ¤ Universidade Federal de São Paulo (Unifesp), Instituto do Mar, Santos, Brazil Corresponding author: Hellen Ceriello ([email protected]) Academic editor: Pavel Stoev Received: 02 Oct 2019 | Accepted: 04 Dec 2019 | Published: 08 Jan 2020 Citation: Ceriello H, Lopes CS.S, Reimer JD, Bakken T, Fukuda MV, Cunha CM, Stampar SN (2020) Knock knock, who’s there?: marine invertebrates in tubes of Ceriantharia (Cnidaria: Anthozoa). Biodiversity Data Journal 8: e47019. https://doi.org/10.3897/BDJ.8.e47019 Abstract This study reports on the fauna found in/on tubes of 10 species of Ceriantharia and discusses the characteristics of these occurrences, as well as the use of mollusc shells in ceriantharian tube construction. A total of 22 tubes of Ceriantharia from Argentina, Brazil, Japan, Norway, Portugal and the United States were analysed, revealing 58 species of marine invertebrates using them as alternative substrates. Based on a literature review and analyses of the sampled material, we report new occurrences for Photis sarae (Crustacea), Microgaza rotella (Mollusca), Brada sp., Dipolydora spp., Notocirrus spp., and Syllis garciai (Annelida). -
Composition, Seasonality, and Life History of Decapod Shrimps in Great Bay, New Jersey
20192019 NORTHEASTERNNortheastern Naturalist NATURALIST 26(4):817–834Vol. 26, No. 4 G. Schreiber, P.C. López-Duarte, and K.W. Able Composition, Seasonality, and Life History of Decapod Shrimps in Great Bay, New Jersey Giselle Schreiber1, Paola C. López-Duarte2, and Kenneth W. Able1,* Abstract - Shrimp are critical to estuarine food webs because they are a resource to eco- nomically and ecologically important fish and crabs, but also consume primary production and prey on larval fish and small invertebrates. Yet, we know little of their natural history. This study determined shrimp community composition, seasonality, and life histories by sampling the water column and benthos with plankton nets and benthic traps, respectively, in Great Bay, a relatively unaltered estuary in southern New Jersey. We identified 6 native (Crangon septemspinosa, Palaemon vulgaris, P. pugio, P. intermedius, Hippolyte pleura- canthus, and Gilvossius setimanus) and 1 non-native (P. macrodactylus) shrimp species. These results suggest that the estuary is home to a relatively diverse group of shrimp species that differ in the spatial and temporal use of the estuary and the adjacent inner shelf. Introduction Estuarine ecosystems are typically dynamic, especially in temperate waters, and comprised of a diverse community of resident and transient species. These can include several abundant shrimp species which are vital to the system as prey (Able and Fahay 2010), predators during different life stages (Ashelby et al. 2013, Bass et al. 2001, Locke et al. 2005, Taylor 2005, Taylor and Danila 2005, Taylor and Peck 2004), processors of plant production (Welsh 1975), and com- mercially important bait (Townes 1938). -
Shrimps, Lobsters, and Crabs of the Atlantic Coast of the Eastern United States, Maine to Florida
SHRIMPS, LOBSTERS, AND CRABS OF THE ATLANTIC COAST OF THE EASTERN UNITED STATES, MAINE TO FLORIDA AUSTIN B.WILLIAMS SMITHSONIAN INSTITUTION PRESS Washington, D.C. 1984 © 1984 Smithsonian Institution. All rights reserved. Printed in the United States Library of Congress Cataloging in Publication Data Williams, Austin B. Shrimps, lobsters, and crabs of the Atlantic coast of the Eastern United States, Maine to Florida. Rev. ed. of: Marine decapod crustaceans of the Carolinas. 1965. Bibliography: p. Includes index. Supt. of Docs, no.: SI 18:2:SL8 1. Decapoda (Crustacea)—Atlantic Coast (U.S.) 2. Crustacea—Atlantic Coast (U.S.) I. Title. QL444.M33W54 1984 595.3'840974 83-600095 ISBN 0-87474-960-3 Editor: Donald C. Fisher Contents Introduction 1 History 1 Classification 2 Zoogeographic Considerations 3 Species Accounts 5 Materials Studied 8 Measurements 8 Glossary 8 Systematic and Ecological Discussion 12 Order Decapoda , 12 Key to Suborders, Infraorders, Sections, Superfamilies and Families 13 Suborder Dendrobranchiata 17 Infraorder Penaeidea 17 Superfamily Penaeoidea 17 Family Solenoceridae 17 Genus Mesopenaeiis 18 Solenocera 19 Family Penaeidae 22 Genus Penaeus 22 Metapenaeopsis 36 Parapenaeus 37 Trachypenaeus 38 Xiphopenaeus 41 Family Sicyoniidae 42 Genus Sicyonia 43 Superfamily Sergestoidea 50 Family Sergestidae 50 Genus Acetes 50 Family Luciferidae 52 Genus Lucifer 52 Suborder Pleocyemata 54 Infraorder Stenopodidea 54 Family Stenopodidae 54 Genus Stenopus 54 Infraorder Caridea 57 Superfamily Pasiphaeoidea 57 Family Pasiphaeidae 57 Genus -
Invertebrate ID Guide
11/13/13 1 This book is a compilation of identification resources for invertebrates found in stomach samples. By no means is it a complete list of all possible prey types. It is simply what has been found in past ChesMMAP and NEAMAP diet studies. A copy of this document is stored in both the ChesMMAP and NEAMAP lab network drives in a folder called ID Guides, along with other useful identification keys, articles, documents, and photos. If you want to see a larger version of any of the images in this document you can simply open the file and zoom in on the picture, or you can open the original file for the photo by navigating to the appropriate subfolder within the Fisheries Gut Lab folder. Other useful links for identification: Isopods http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-33/htm/doc.html http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-48/htm/doc.html Polychaetes http://web.vims.edu/bio/benthic/polychaete.html http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-34/htm/doc.html Cephalopods http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-44/htm/doc.html Amphipods http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-67/htm/doc.html Molluscs http://www.oceanica.cofc.edu/shellguide/ http://www.jaxshells.org/slife4.htm Bivalves http://www.jaxshells.org/atlanticb.htm Gastropods http://www.jaxshells.org/atlantic.htm Crustaceans http://www.jaxshells.org/slifex26.htm Echinoderms http://www.jaxshells.org/eich26.htm 2 PROTOZOA (FORAMINIFERA) ................................................................................................................................ 4 PORIFERA (SPONGES) ............................................................................................................................................... 4 CNIDARIA (JELLYFISHES, HYDROIDS, SEA ANEMONES) ............................................................................... 4 CTENOPHORA (COMB JELLIES)............................................................................................................................ -
The Chesapeake Bay: a Study of Present and Future Water Quality and Its Ecological Effects Volume II: Analysis and Projection of Ecological Conditions
W&M ScholarWorks Reports 6-1-1975 The Chesapeake Bay: A Study of Present and Future Water Quality and Its Ecological Effects Volume II: Analysis and Projection of Ecological Conditions Morris H. Roberts Jr. Virginia Institute of Marine Science Donald F. Boesch Virginia Institute of Marine Science Michael E. Bender Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/reports Part of the Marine Biology Commons Recommended Citation Roberts, M. H., Boesch, D. F., & Bender, M. E. (1975) The Chesapeake Bay: A Study of Present and Future Water Quality and Its Ecological Effects Volume II: Analysis and Projection of Ecological Conditions. Special Reports in Applied Marine Science and Ocean Engineering (SRAMSOE) No. 91. Virginia Institute of Marine Science, William & Mary. https://doi.org/10.21220/V5RR0S This Report is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in Reports by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. /,j.p r======--=-===-=-====:--==--=-----=========================:::176° 7!5° 74° 73° -- _: ·-,. ., .. .,·[. ___ ._ .. :.. .i _.,...-_/ ./ 1· ,/ ...J ejection onditions _r•. \ ...... · ; -- ~-_))) , ,• .···· :....-<,··' _., ,,· -~---_ .. ....- :::·.;_; ~--=----~~-~--.-/--..--:----~~---+--------3 ., .. _. - ./ _/ , / .,::qy.. .< ,,. _,.· -~/. :.... , :., .···- .... ~t- .... ) // ,,<_[<' orri:s H. Robe ,: Jr. ,··-. '.,·, /_:/ / t Do"nald F. Boes t~/ />,... / /., ,_._< and / ,· _.,· ,-·- / ,.-··f/;__ f fc:hael E. Ben er \ ·1 {/? / ,.-: \ ·-:::?_ / \ ,' ~--., (:'} ~ / ,: /·' // ~ - )/ '._;, (_·_::~j;::;}£ "M?'-i~-¥.~---t---~---- ,i -------------=·:::.'--·:...__ . -------------+------~3 t .. -'\ ............,_:._:,)- ' ,: ,' ( (."_ 'l: I ' :~ : ; ·•• , FINAL REPORT • }. -i t.\ ,_: ._·_= _,{ ,u,·. l.&J :._(/,,-.,) TO 1' - ~--. / ~!) / ij_/ / / ~_,.-f \/ N.a.ltti:bna,{ Connn · ssion on Water Quality ct /-·-..: \hi;/ j : f\.t_ / i i, ( i,, ~ ~ !. -
An Animal-Sediment Study in the Lower York River- February 1965 To
An Animal-Sediment Study in the Lower )~rk River - February 1965 to February 1966.1 By Dexter s. Haven, John N. Kraeuter, Richa.rd c. Swartz and Reinaldo Morales-Alamo Special Scientific Report No. 108 Virginia Institute of Marine Sci.ence and School of Marine Science, The College of William and Ma.ry Gloucester Point, Virginia 23062 Frank o. Perkins Acting Director November 1981 1From Concentration of Suspended Radioactive Wastes Into Bottom Deposits Period. Final Report to the United States Atomic Energy Commission. Contract No. AT-(40-1)-2789 for the period 1 January 1961 to 31 December 1967. An Animal-Sediment Study in the Lower York River - February 1965 to February 1966.1 By Dexter S. Haven, John N. Kraeuter, Richard c. Swartz and Reinaldo Morales-Alamo Special Scientific Report No. 108 Virginia Institute of Marine SciEmce and School of Marine Science, The College of William and Mary Gloucester Point, Virginia 23062 Frank o. Perkins Acting Director November 1981 1From Concentration of Suspended Radioactive Waste~s Into Bottom Deposits Period. Final Report to the United StatE!S Atomic Energy Commission. Contract No. AT-(40-1)-2789 for the period 1 January 1961 to 31 December 1967. FOREWORD The following study was funded by Contract No. AT-(40-1)-2789 with the U.S. Atomic Energy Commission. The work. was completed in December 1967. The material presented here was e.xtracted from the final report. Since 1967, the taxonomy of various species has changed. Therefore, the taxonomy for those species has been updated here. An appendix is included which lists the species collected with the corresponding ten-digit VIMS taxonomic code. -
APPENDIX G. Bibliography of ECOTOX Open Literature
APPENDIX G. Bibliography of ECOTOX Open Literature Explanation of OPP Acceptability Criteria and Rejection Codes for ECOTOX Data Studies located and coded into ECOTOX must meet acceptability criteria, as established in the Interim Guidance of the Evaluation Criteria for Ecological Toxicity Data in the Open Literature, Phase I and II, Office of Pesticide Programs, U.S. Environmental Protection Agency, July 16, 2004. Studies that do not meet these criteria are designated in the bibliography as “Accepted for ECOTOX but not OPP.” The intent of the acceptability criteria is to ensure data quality and verifiability. The criteria parallel criteria used in evaluating registrant-submitted studies. Specific criteria are listed below, along with the corresponding rejection code. · The paper does not report toxicology information for a chemical of concern to OPP; (Rejection Code: NO COC) • The article is not published in English language; (Rejection Code: NO FOREIGN) • The study is not presented as a full article. Abstracts will not be considered; (Rejection Code: NO ABSTRACT) • The paper is not publicly available document; (Rejection Code: NO NOT PUBLIC (typically not used, as any paper acquired from the ECOTOX holding or through the literature search is considered public) • The paper is not the primary source of the data; (Rejection Code: NO REVIEW) • The paper does not report that treatment(s) were compared to an acceptable control; (Rejection Code: NO CONTROL) • The paper does not report an explicit duration of exposure; (Rejection Code: NO DURATION) • The paper does not report a concurrent environmental chemical concentration/dose or application rate; (Rejection Code: NO CONC) • The paper does not report the location of the study (e.g., laboratory vs. -
NOAA Technical Report NMFS SSRF-749
749 NOAA Technical Report NMFS SSRF-749 ..^*r °'5°v Food of Eight Northwest \ Atlantic Pleuronectiform C Fishes */ ^'irts o« Richard W. Langton and Ray E. Bowman September 1981 Marine Biological Laboratory LIBRARY OCT 14 1992 ii Vv'oods Hole, Mass. , U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service . NOAA TECHNICAL REPORTS National Marine Fisheries Service, Special Scientific Report—Fisheries The major responsibilities of the National Marine Fisheries Service (NMFS) are lo monitor and assess the abundance and geographic distribution of fishery resources, to understand and predict fluctuations in the quantity and distribution of these resources, and to establish levels for optimum use of the resources. NMFS is also charged with the development and implementation of policies for managing national fishing grounds, development and enforce- ment of domestic fisheries regulations, surveillance of foreign fishing off United States coastal waters, and the development and enforcement of interna- tional fishery agreements and policies. NMFS also assists the fishing industry through marketing service and economic analysis programs, and mortgage insurance and vessel construction subsidies. It collects, analyzes, and publishes statistics on various phases of the industry. The Special Scientific Report — Fisheries series was established in 1949. The series carries reports on scientific investigations that document long-term continuing programs of NMFS, or intensive scientific reports on studies of restricted scope. The reports may deal with applied fishery problems. The series is also used as a medium for the publication of bibliographies of a specialized scientific nature. NOAA Technical Reports NMFS SSRF are available free in limited numbers to governmental agencies, both Federal and State. -
Feeding Ecology of the Common Shrimp Crangon Crangon in Port Erin Bay, Isle of Man, Irish Sea
MARINE ECOLOGY PROGRESS SERIES Vol. 214: 211–223, 2001 Published April 26 Mar Ecol Prog Ser Feeding ecology of the common shrimp Crangon crangon in Port Erin Bay, Isle of Man, Irish Sea Chul-Woong Oh, Richard G. Hartnoll*, Richard D. M. Nash Port Erin Marine Laboratory, School of Biological Sciences, University of Liverpool, Port Erin, Isle of Man IM9 6JA, British Isles ABSTRACT: The diet of the common shrimp Crangon crangon (L.) was studied in Port Erin Bay (Isle of Man, Irish Sea) by analysis of stomach contents, with comparison by season and size class of diet composition and prey diversity. Monthly samples were taken from April 1995 to March 1998. Mysids and amphipods together constituted the dominant prey, accounting for >60% of the diet in both per- cent occurrence and percent abundance. Mysids were most important irrespective of season or size class. The small size group (<10 mm CL) tended to be more dependent on epifaunal and infaunal organisms, reflecting ontogenic changes in diet. Trophic diversity and equality of diet varied with season and size class, with highest values in spring. Diet composition differed among seasons and size classes. Niche overlap index was higher between size classes (Schoener index: maximum = 0.83 in summer, minimum = 0.67 in autumn) than between seasons (Schoener index: maximum = 0.70 between summer and autumn, minimum = 0.46 between spring and winter). Shrimp size was signif- icantly correlated with size of certain prey (e.g. Schistomysis spiritus and Gammarus sp.) though not with size of infaunal prey (e.g. Iphinoë trispinosa and Corbula sp.).