The Chesapeake Bay: a Study of Present and Future Water Quality and Its Ecological Effects Volume II: Analysis and Projection of Ecological Conditions
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Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary
July 15, 2013 Final Report Project SR12-002: Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary Gary L. Taghon, Rutgers University, Project Manager [email protected] Judith P. Grassle, Rutgers University, Co-Manager [email protected] Charlotte M. Fuller, Rutgers University, Co-Manager [email protected] Rosemarie F. Petrecca, Rutgers University, Co-Manager and Quality Assurance Officer [email protected] Patricia Ramey, Senckenberg Research Institute and Natural History Museum, Frankfurt Germany, Co-Manager [email protected] Thomas Belton, NJDEP Project Manager and NJDEP Research Coordinator [email protected] Marc Ferko, NJDEP Quality Assurance Officer [email protected] Bob Schuster, NJDEP Bureau of Marine Water Monitoring [email protected] Introduction The Barnegat Bay ecosystem is potentially under stress from human impacts, which have increased over the past several decades. Benthic macroinvertebrates are commonly included in studies to monitor the effects of human and natural stresses on marine and estuarine ecosystems. There are several reasons for this. Macroinvertebrates (here defined as animals retained on a 0.5-mm mesh sieve) are abundant in most coastal and estuarine sediments, typically on the order of 103 to 104 per meter squared. Benthic communities are typically composed of many taxa from different phyla, and quantitative measures of community diversity (e.g., Rosenberg et al. 2004) and the relative abundance of animals with different feeding behaviors (e.g., Weisberg et al. 1997, Pelletier et al. 2010), can be used to evaluate ecosystem health. Because most benthic invertebrates are sedentary as adults, they function as integrators, over periods of months to years, of the properties of their environment. -
Diversity of Benthic Assemblages of the Río De La Plata Estuary and Adjacent Marine Zones
BENTHIC DIVERSITY OF THE RÍO DE LA PLATA ESTUARY AND ADJACENT MARINE WATERS DIEGO A. GIBERTO SUPERVISOR: CLAUDIA S. BREMEC PNUD Project/Gef RLA/99/G31 2003 1 ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯ BENTHIC DIVERSITY OF THE RÍO DE LA PLATA ESTUARY AND ADJACENT MARINE WATERS Report __________________________________________________________________ AUTHOR: DIEGO A. GIBERTO SUPERVISOR: CLAUDIA S. BREMEC __________________________________________________________________ Summary The main objectives of this report are to analyze the infralitoral benthic assemblages of the Río de la Plata estuary and adjacent marine zones, and establish broad patterns of species diversity throughout the study area. Species richness was utilized as a measure of diversity. The report was divided in two major approaches: the analysis of an historical background and the EH-09-99 survey. The taxonomical groups that contributed with the major number of species were the mollusks, crustaceans, polychaetes, echinoderms and coelenterates. A classical gradient of increasing species richness from estuarine to marine waters was found. Also, few species were found inhabiting both estuarine and marine waters. The species richness values were high at the continental shelf and the coastal marine environments. The highest number of species was recorded in mussel beds and coarse-sandy bottoms marine assemblages. The irregular pattern of species richness found in marine waters could be due to the presence of different heterogeneous bottom types all over the study area. It is concluded that the available information about benthic communities inhabiting the study area is scarce. In addition, a large portion of the studies were developed mainly on the marine zones < 50 m, while the estuarine zones and the marine zones > 50 m are underestimated. -
Final Report
Developing Molecular Methods to Identify and Quantify Ballast Water Organisms: A Test Case with Cnidarians SERDP Project # CP-1251 Performing Organization: Brian R. Kreiser Department of Biological Sciences 118 College Drive #5018 University of Southern Mississippi Hattiesburg, MS 39406 601-266-6556 [email protected] Date: 4/15/04 Revision #: ?? Table of Contents Table of Contents i List of Acronyms ii List of Figures iv List of Tables vi Acknowledgements 1 Executive Summary 2 Background 2 Methods 2 Results 3 Conclusions 5 Transition Plan 5 Recommendations 6 Objective 7 Background 8 The Problem and Approach 8 Why cnidarians? 9 Indicators of ballast water exchange 9 Materials and Methods 11 Phase I. Specimens 11 DNA Isolation 11 Marker Identification 11 Taxa identifications 13 Phase II. Detection ability 13 Detection limits 14 Testing mixed samples 14 Phase III. 14 Results and Accomplishments 16 Phase I. Specimens 16 DNA Isolation 16 Marker Identification 16 Taxa identifications 17 i RFLPs of 16S rRNA 17 Phase II. Detection ability 18 Detection limits 19 Testing mixed samples 19 Phase III. DNA extractions 19 PCR results 20 Conclusions 21 Summary, utility and follow-on efforts 21 Economic feasibility 22 Transition plan 23 Recommendations 23 Literature Cited 24 Appendices A - Supporting Data 27 B - List of Technical Publications 50 ii List of Acronyms DGGE - denaturing gradient gel electrophoresis DMSO - dimethyl sulfoxide DNA - deoxyribonucleic acid ITS - internal transcribed spacer mtDNA - mitochondrial DNA PCR - polymerase chain reaction rRNA - ribosomal RNA - ribonucleic acid RFLPs - restriction fragment length polymorphisms SSCP - single strand conformation polymorphisms iii List of Figures Figure 1. Figure 1. -
Marine Invertebrates in Tubes of Ceriantharia (Cnidaria: Anthozoa)
Biodiversity Data Journal 8: e47019 doi: 10.3897/BDJ.8.e47019 Research Article Knock knock, who’s there?: marine invertebrates in tubes of Ceriantharia (Cnidaria: Anthozoa) Hellen Ceriello‡,§, Celine S.S. Lopes‡,§, James Davis Reimer|, Torkild Bakken ¶, Marcelo V. Fukuda#, Carlo Magenta Cunha¤, Sérgio N. Stampar‡,§ ‡ Universidade Estadual Paulista "Júlio de Mesquita Filho" (UNESP), FCL, Assis, Brazil § Universidade Estadual Paulista "Júlio de Mesquita Filho" (UNESP), Instituto de Biociências, Botucatu, Brazil | University of the Ryukyus, Nishihara, Okinawa, Japan ¶ Norwegian University of Science and Technology, NTNU University Museum, Trondheim, Norway # Museu de Zoologia da Universidade de São Paulo (MZSP), São Paulo, Brazil ¤ Universidade Federal de São Paulo (Unifesp), Instituto do Mar, Santos, Brazil Corresponding author: Hellen Ceriello ([email protected]) Academic editor: Pavel Stoev Received: 02 Oct 2019 | Accepted: 04 Dec 2019 | Published: 08 Jan 2020 Citation: Ceriello H, Lopes CS.S, Reimer JD, Bakken T, Fukuda MV, Cunha CM, Stampar SN (2020) Knock knock, who’s there?: marine invertebrates in tubes of Ceriantharia (Cnidaria: Anthozoa). Biodiversity Data Journal 8: e47019. https://doi.org/10.3897/BDJ.8.e47019 Abstract This study reports on the fauna found in/on tubes of 10 species of Ceriantharia and discusses the characteristics of these occurrences, as well as the use of mollusc shells in ceriantharian tube construction. A total of 22 tubes of Ceriantharia from Argentina, Brazil, Japan, Norway, Portugal and the United States were analysed, revealing 58 species of marine invertebrates using them as alternative substrates. Based on a literature review and analyses of the sampled material, we report new occurrences for Photis sarae (Crustacea), Microgaza rotella (Mollusca), Brada sp., Dipolydora spp., Notocirrus spp., and Syllis garciai (Annelida). -
Invertebrate ID Guide
11/13/13 1 This book is a compilation of identification resources for invertebrates found in stomach samples. By no means is it a complete list of all possible prey types. It is simply what has been found in past ChesMMAP and NEAMAP diet studies. A copy of this document is stored in both the ChesMMAP and NEAMAP lab network drives in a folder called ID Guides, along with other useful identification keys, articles, documents, and photos. If you want to see a larger version of any of the images in this document you can simply open the file and zoom in on the picture, or you can open the original file for the photo by navigating to the appropriate subfolder within the Fisheries Gut Lab folder. Other useful links for identification: Isopods http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-33/htm/doc.html http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-48/htm/doc.html Polychaetes http://web.vims.edu/bio/benthic/polychaete.html http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-34/htm/doc.html Cephalopods http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-44/htm/doc.html Amphipods http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-67/htm/doc.html Molluscs http://www.oceanica.cofc.edu/shellguide/ http://www.jaxshells.org/slife4.htm Bivalves http://www.jaxshells.org/atlanticb.htm Gastropods http://www.jaxshells.org/atlantic.htm Crustaceans http://www.jaxshells.org/slifex26.htm Echinoderms http://www.jaxshells.org/eich26.htm 2 PROTOZOA (FORAMINIFERA) ................................................................................................................................ 4 PORIFERA (SPONGES) ............................................................................................................................................... 4 CNIDARIA (JELLYFISHES, HYDROIDS, SEA ANEMONES) ............................................................................... 4 CTENOPHORA (COMB JELLIES)............................................................................................................................ -
An Animal-Sediment Study in the Lower York River- February 1965 To
An Animal-Sediment Study in the Lower )~rk River - February 1965 to February 1966.1 By Dexter s. Haven, John N. Kraeuter, Richa.rd c. Swartz and Reinaldo Morales-Alamo Special Scientific Report No. 108 Virginia Institute of Marine Sci.ence and School of Marine Science, The College of William and Ma.ry Gloucester Point, Virginia 23062 Frank o. Perkins Acting Director November 1981 1From Concentration of Suspended Radioactive Wastes Into Bottom Deposits Period. Final Report to the United States Atomic Energy Commission. Contract No. AT-(40-1)-2789 for the period 1 January 1961 to 31 December 1967. An Animal-Sediment Study in the Lower York River - February 1965 to February 1966.1 By Dexter S. Haven, John N. Kraeuter, Richard c. Swartz and Reinaldo Morales-Alamo Special Scientific Report No. 108 Virginia Institute of Marine SciEmce and School of Marine Science, The College of William and Mary Gloucester Point, Virginia 23062 Frank o. Perkins Acting Director November 1981 1From Concentration of Suspended Radioactive Waste~s Into Bottom Deposits Period. Final Report to the United StatE!S Atomic Energy Commission. Contract No. AT-(40-1)-2789 for the period 1 January 1961 to 31 December 1967. FOREWORD The following study was funded by Contract No. AT-(40-1)-2789 with the U.S. Atomic Energy Commission. The work. was completed in December 1967. The material presented here was e.xtracted from the final report. Since 1967, the taxonomy of various species has changed. Therefore, the taxonomy for those species has been updated here. An appendix is included which lists the species collected with the corresponding ten-digit VIMS taxonomic code. -
Annotated Checklist of Mollusks of Chesapeake Bay
W&M ScholarWorks Reports 1956 Annotated checklist of mollusks of Chesapeake Bay J. D. Andrews Virginia Fisheries Laboratory Follow this and additional works at: https://scholarworks.wm.edu/reports Part of the Marine Biology Commons Recommended Citation Andrews, J. D. (1956) Annotated checklist of mollusks of Chesapeake Bay. Virginia Institute of Marine Science, William & Mary. https://scholarworks.wm.edu/reports/2399 This Report is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in Reports by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. ANNOTATED CHECKLIST OF MOLLUSKS OF CHESAPEAKE BAY (Revised April 1956) J. D. Andrews Virginia Fisheries Laboratory Gloucester Point This preliminary checklist has been prepared for the use of students and biologists working in the Chesapeake Bay area. The list is conservative and probably omits a number of species, especially small snails and parasitic groups like the pyrams. All species listed, with one or two exceptions, have been collected as live specimens by the author, and collections of each have been deposited in the U. S. National Museum. Species given in the literature but not yet confirmed by specimens in the National Museum have been purposely omitted. The checklist includes all species collected in the brackish waters of Chesapeake Bay except certain fresh-water groups, e.g. the hydrobiids, which invade salty waters a short distance. The ocean shore of Virginia, both on Eastern Shore and the mainland, has been excluded. The families are arranged in the order found in Johnson's checklist and the nomenclature follows Johnson except where Abbott or Johnsonia give changes. -
Ceriantharia (Cnidaria) from Australia, New Zealand and Antarctica with Descriptions of Four New Species
Records of the Australian Museum (2020) Records of the Australian Museum vol. 72, issue no. 3, pp. 81–100 a peer-reviewed open-access journal https://doi.org/10.3853/j.2201-4349.72.2020.1762 published by the Australian Museum, Sydney communicating knowledge derived from our collections ISSN 0067-1975 (print), 2201-4349 (online) Ceriantharia (Cnidaria) from Australia, New Zealand and Antarctica with Descriptions of Four New Species Sérgio N. Stampar1 , V. Sadie Mills2 and Stephen J. Keable3 1 Laboratório de Evolução e Diversidade Aquática—LEDA, Departamento de Ciências Biológicas, Universidade Estadual Paulista (UNESP), FCL/Assis, Av. Dom Antônio, 2100, 19806-900, Assis, SP, Brazil 2 NIWA Invertebrate Collection, National Institute of Water and Atmospheric Research, 301 Evans Bay Parade Hataitai, 6021 Wellington, New Zealand 3 Australian Museum Research Institute, Australian Museum, 1 William Street, Sydney NSW 2010, Australia Abstract. The fauna of Ceriantharia (tube-anemones) in the South Pacific is poorly studied with only four shallow-water species formally described and these animals are known from few regions in very specific reports. Cerianthids are organisms that live in a tube constructed with a special type of cnidae and are currently grouped in an exclusive subclass of Anthozoa. This study addresses specimens from three natural history collections, the Australian Museum and the Museum and Art Gallery of the Northern Territory (both Australia), and the National Institute of Water & Atmospheric Research (NIWA) Invertebrate Collection (New Zealand), focusing on specimens from the Coral Sea, Tasman Sea and Antarctic Ocean. As a result, four new species are described and one synonymized. This highlights the ongoing need for taxonomic studies in the region, especially for marine organisms. -
East Coast Marine Shells; Descriptions of Shore Mollusks Together With
fi*": \ EAST COAST MARINE SHELLS / A • •:? e p "I have seen A curious child, who dwelt upon a tract Of Inland ground, applying to his ear The .convolutions of a smooth-lipp'd shell; To yi'hJ|3h in silence hush'd, his very soul ListehM' .Intensely and his countenance soon Brightened' with joy: for murmerings from within Were heai>^, — sonorous cadences, whereby. To his b^ief, the monitor express 'd Myster.4?>us union with its native sea." Wordsworth 11 S 6^^ r EAST COAST MARINE SHELLS Descriptions of shore mollusks together with many living below tide mark, from Maine to Texas inclusive, especially Florida With more than one thousand drawings and photographs By MAXWELL SMITH EDWARDS BROTHERS, INC. ANN ARBOR, MICHIGAN J 1937 Copyright 1937 MAXWELL SMITH PUNTZO IN D,S.A. LUhoprinted by Edwards B'olheri. Inc.. LUhtiprinters and Publishert Ann Arbor, Michigan. iQfj INTRODUCTION lilTno has not felt the urge to explore the quiet lagoon, the sandy beach, the coral reef, the Isolated sandbar, the wide muddy tidal flat, or the rock-bound coast? How many rich harvests of specimens do these yield the collector from time to time? This volume is intended to answer at least some of these questions. From the viewpoint of the biologist, artist, engineer, or craftsman, shellfish present lessons in development, construction, symme- try, harmony and color which are almost unique. To the novice an acquaint- ance with these creatures will reveal an entirely new world which, in addi- tion to affording real pleasure, will supply much of practical value. Life is indeed limitless and among the lesser animals this is particularly true. -
Invertebrate Identification Guide for Chesmmap and NEAMAP Diet Analysis Studies
W&M ScholarWorks Reports 11-13-2013 Invertebrate Identification Guide for ChesMMAP and NEAMAP Diet Analysis Studies Chesapeake Bay Multispecies Monitoring and Assessment Program Follow this and additional works at: https://scholarworks.wm.edu/reports Part of the Marine Biology Commons Recommended Citation Chesapeake Bay Multispecies Monitoring and Assessment Program. (2013) Invertebrate Identification Guide for ChesMMAP and NEAMAP Diet Analysis Studies. Virginia Institute of Marine Science, William & Mary. https://doi.org/10.25773/b0y5-k411 This Report is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in Reports by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. 11/13/13 1 This book is a compilation of identification resources for invertebrates found in stomach samples. By no means is it a complete list of all possible prey types. It is simply what has been found in past ChesMMAP and NEAMAP diet studies. A copy of this document is stored in both the ChesMMAP and NEAMAP lab network drives in a folder called ID Guides, along with other useful identification keys, articles, documents, and photos. If you want to see a larger version of any of the images in this document you can simply open the file and zoom in on the picture, or you can open the original file for the photo by navigating to the appropriate subfolder within the Fisheries Gut Lab folder. Other useful links for identification: Isopods http://www.19thcenturyscience.org/HMSC/HMSC-Reports/Zool-33/htm/doc.html -
NOAA Technical Report NMFS SSRF-738
738 NOAA Technical Report NMFS SSRF-738 y^f^^ OFc, Environmental Baselines in Long Island Sound, 1972-73 R. N. Reid, A. B. Frame, and A. F. Draxler '^ ^^ATES O^ December 1979 r Marine Biological Laboratory ! LIBRARY 1 OCT 4 1992 i Woods Hole, Mass. U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service NOAA TECHNICAL REPORTS National Marine Fisheries Service, Special Scientific Report— Fisheries The mu'i.r r.-uwnriMlilir^ "f ttif National Marine Fisheries Sen-ire 'NMFS) arp t" mnnitir and nwews the nhundance and Reofrmphic ^h raarket- -.J publisbe* 'ie* wa^T e^ta'r)li^h•.(' ir'i (urrii- re|^ir<!> >r, ^Ljcntinc investigations that document may deal with applied fishery ai.so b- I iiiinrn.aii otherwist' n' 'ie<i ' Iri :it 1 '^-^, ^er ^iTMi onmeiua; tiiLf are: 700. Expi ;inythermograph ob8er\'ations from the NMTS/ ments, U.S. Government Printing Office, Washington, DC 20402: Stock MARAD Ship of Opportunity Program for 1973. By Steven K. Cook, June No. 003-020-00134-3. 1976, iii + 13 p.. 10 figs. For sale by the Superintendent of Documents, L'.S (;ovemment Printing Omce. Washington, DC 20402; Stock No. 003- 712. Annual physical and chemical ' . cycles of Auke Bay. 017-0O.«2-5. southeastern Alaska. By Herbert E ulaa R. McLain, and Bruce L. Wing. May 1977. iii -^ 11 p.. ib figs.. 1 table. For sale by the 701 Seasonal abundance and distribution of zooplankton, fish eggs, Superintendent of Documents. U.S. Government Printing Office. Wash- and fish larvae in the eastern Gulf of .Mexico, 1972-74. -
Appendix 1A, B, C, D, E, F
Appendix 1a, b, c, d, e, f Table of Contents Appendix 1a. Rhode Island SWAP Data Sources ....................................................................... 1 Appendix 1b. Rhode Island Species of Greatest Conservation Need .................................... 19 Appendix 1c. Regional Conservation Needs-Species of Greatest Conservation Need ....... 48 Appendix 1d. List of Rare Plants in Rhode Island .................................................................... 60 Appendix 1e: Summary of Rhode Island Vertebrate Additions and Deletions to 2005 SGCN List ....................................................................................................................................................... 75 Appendix 1f: Summary of Rhode Island Invertebrate Additions and Deletions to 2005 SGCN List ....................................................................................................................................................... 78 APPENDIX 1a: RHODE ISLAND WAP DATA SOURCES Appendix 1a. Rhode Island SWAP Data Sources This appendix lists the information sources that were researched, compiled, and reviewed in order to best determine and present the status of the full array of wildlife and its conservation in Rhode Island (Element 1). A wide diversity of literature and programs was consulted and compiled through extensive research and coordination efforts. Some of these sources are referenced in the Literature Cited section of this document, and the remaining sources are provided here as a resource for users and implementing