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Part I: Carbonyl-Olefin Metathesis of Norbornene
Part I: Carbonyl-Olefin Metathesis of Norbornene Part II: Cyclopropenimine-Catalyzed Asymmetric Michael Reactions Zara Maxine Seibel Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2016 1 © 2016 Zara Maxine Seibel All Rights Reserved 2 ABSTRACT Part I: Carbonyl-Olefin Metathesis of Norbornene Part II: Cyclopropenimine-Catalyzed Asymmetric Michael Reactions Zara Maxine Seibel This thesis details progress towards the development of an organocatalytic carbonyl- olefin metathesis of norbornene. This transformation has not previously been done catalytically and has not been done in practical manner with stepwise or stoichiometric processes. Building on the previous work of the Lambert lab on the metathesis of cyclopropene and an aldehyde using a hydrazine catalyst, this work discusses efforts to expand to the less stained norbornene. Computational and experimental studies on the catalytic cycle are discussed, including detailed experimental work on how various factors affect the difficult cycloreversion step. The second portion of this thesis details the use of chiral cyclopropenimine bases as catalysts for asymmetric Michael reactions. The Lambert lab has previously developed chiral cyclopropenimine bases for glycine imine nucleophiles. The scope of these catalysts was expanded to include glycine imine derivatives in which the nitrogen atom was replaced with a carbon atom, and to include imines derived from other amino acids. i Table of Contents List of Abbreviations…………………………………………………………………………..iv Part I: Carbonyl-Olefin Metathesis…………………………………………………………… 1 Chapter 1 – Metathesis Reactions of Double Bonds………………………………………….. 1 Introduction………………………………………………………………………………. 1 Olefin Metathesis………………………………………………………………………… 2 Wittig Reaction…………………………………………………………………………... 6 Tebbe Olefination………………………………………………………………………... 9 Carbonyl-Olefin Metathesis……………………………………………………………. -
Sulfonyl-Containing Nucleoside Phosphotriesters And
Sulfonyl-Containing Nucleoside Phosphotriesters and Phosphoramidates as Novel Anticancer Prodrugs of 5-Fluoro-2´-Deoxyuridine-5´- Monophosphate (FdUMP) Yuan-Wan Sun, Kun-Ming Chen, and Chul-Hoon Kwon†,* †Department of Pharmaceutical Sciences, College of Pharmacy and Allied Health Professions, St. John’s University, Jamaica, New York 11439 * To whom correspondence should be addressed. Department of Pharmaceutical Sciences, College of Pharmacy and Allied Health Professions, St. John’s University, 8000 Utopia parkway, Jamaica, NY 11439. Tel: (718)-990-5214, fax: (718)-990-6551, e-mail: [email protected]. Abstract A series of sulfonyl-containing 5-fluoro-2´-deoxyuridine (FdU) phosphotriester and phosphoramidate analogues were designed and synthesized as anticancer prodrugs of FdUMP. Stability studies have demonstrated that these compounds underwent pH dependent β-elimination to liberate the corresponding nucleotide species with half-lives in the range of 0.33 to 12.23 h under model physiological conditions in 0.1M phosphate buffer at pH 7.4 and 37 °C. Acceleration of the elimination was observed in the presence of human plasma. Compounds with FdUMP moiety (4-9) were considerably more potent than those without (1-3) as well as 5-fluorouracil (5-FU) against Chinese hamster lung fibroblasts (V-79 cells) in vitro. Addition of thymidine (10 µM) reversed the growth inhibition activities of only 5-FU and the compounds with FdUMP moiety, but had no effect on those without. These results suggested a mechanism of action of the prodrugs involving the intracellular release of FdUMP. Introduction 5-Fluoro-2´-deoxyuridine-5´-monophosphate (FdUMP) is the major metabolite responsible for the anticancer activity of 5-FU (Chart 1). -
5. POTENTIAL for HUMAN EXPOSURE 5.1 OVERVIEW White
WHITE PHOSPHORUS 157 5. POTENTIAL FOR HUMAN EXPOSURE 5.1 OVERVIEW White phosphorus can enter the environment from its production, use, accidental spills during loading and unloading for shipment, and accidental spills during transport. Hazardous wastes sites containing white phosphorus can also be a source of phosphorus in the environment. White phosphorus has been found in at least 77 of the 1,430 current or former EPA National Priorities List (NPL) hazardous waste sites (HazDat 1996). However, the number of sites evaluated for white phosphorus is not known. The frequency of these sites within the United States can be seen in Figure 5-l. The persistence of elemental phosphorus in the air is very short due to oxidation to phosphorus oxides and ultimately to phosphorus acids. However, the particulate phosphorus aerosol may be coated with a protective oxide layer that may prevent further oxidation and extend the lifetime of particulate phosphorus in air. Both wet and dry deposition remove unreacted elemental phosphorus and the degradation products from the air. Similarly, elemental phosphorus oxidizes and hydrolyzes in water and in soil. A small amount of elemental phosphorus is lost from soil and water by volatilization. Phosphorus is used as a fumigant in the storage of grain. Because of ease of application, pellets of aluminum or magnesium phosphide are commonly used (Garry et al. 1993). Phosphine, a highly toxic gas, is generated from phosphide. The rate of formation of phosphine (permissible exposure limit [PEL], 0.4 mg/m3) is dependent on the ambient temperature and humidity. Its release is rapid, and it is extremely fatal to the unprotected person (Garry et al. -
"Phosphorus-Containing Polymers and Oligomers"
Vol. 3 PHOSPHORUS-CONTAINING POLYMERS AND OLIGOMERS 447 PHOSPHORUS-CONTAINING POLYMERS AND OLIGOMERS Introduction The only valid generalization about phosphorus polymers is that they tend to be flame retardant (1,2). The flame-retardant effect depends heavily on the phos- phorus content. Red (polymeric) phosphorus, despite its combustibility, is a com- mercial flame-retardant additive. Other features of many phosphorus polymers are adhesion to metals, metal ion-binding characteristics, and increased polarity (2). The flexible P O C linkages tend to impart lower glass-transition temper- atures. Phosphorus polymers with acid groups are used industrially for ion ex- change, adhesion, and scale inhibition. Some form water-soluble coatings used as primers in metal protection and for photolithographic plates. The binding proper- ties have led to dental applications. Cellulose phosphates have found some drug and ion-exchange uses. Academic interest has been stimulated by the relationship of certain phosphate polymers to natural products, such as the nucleic acids (see POLYNUCLEOTIDES). This review gives most attention to those phosphorus polymers which have attained commercial use or which have been (or currently are) the subject of seri- ous development efforts. Other reviews encompass phosphorus polymers of mainly academic interest (3,4). The commercial examples tend to be specialty polymers and none have attained large volume usage. One reason is cost. In addition, those polymers having P O links are usually more hydrolyzable than corresponding C O bonded polymers, and moreover the phosphorus acids which are liber- ated tend to catalyze further hydrolysis. Hydrolytically stable phosphine oxide Encyclopedia of Polymer Science and Technology. Copyright John Wiley & Sons, Inc. -
Approach to Site-Selective Protein Modification JUSTIN M
A “Tag-and-Modify” Approach to Site-Selective Protein Modification JUSTIN M. CHALKER, GONC-ALO J. L. BERNARDES, AND BENJAMIN G. DAVIS* Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom RECEIVED ON FEBRUARY 27, 2011 CONSPECTUS ovalent modification can expand a protein's functional capacity. Fluorescent or radioactive labeling, for instance, allows C imaging of a protein in real time. Labeling with an affinity probe enables isolation of target proteins and other interacting molecules. At the other end of this functional spectrum, protein structures can be naturally altered by enzymatic action. ProteinÀprotein interactions, genetic regulation, and a range of cellular processes are under the purview of these post- translational modifications. The ability of protein chemists to install these covalent additions selectively has been critical for elucidating their roles in biology. Frequently the transformations must be applied in a site-specific manner, which demands the most selective chemistry. In this Account, we discuss the development and application of such chemistry in our laboratory. A centerpiece of our strategy is a “tag-and-modify” approach, which entails sequential installation of a uniquely reactive chemical group into the protein (the “tag”) and the selective or specific modification of this group. The chemical tag can be a natural or unnatural amino acid residue. Of the natural residues, cysteine is the most widely used as a tag. Early work in our program focused on selective disulfide formation in the synthesis of glycoproteins. For certain applications, the susceptibility of disulfides to reduction was a limitation and prompted the development of several methods for the synthesis of more stable thioether modifications. -
Amide Activation: an Emerging Tool for Chemoselective Synthesis
Featuring work from the research group of Professor As featured in: Nuno Maulide, University of Vienna, Vienna, Austria Amide activation: an emerging tool for chemoselective synthesis Let them stand out of the crowd – Amide activation enables the chemoselective modification of a large variety of molecules while leaving many other functional groups untouched, making it attractive for the synthesis of sophisticated targets. This issue features a review on this emerging field and its application in total synthesis. See Nuno Maulide et al., Chem. Soc. Rev., 2018, 47, 7899. rsc.li/chem-soc-rev Registered charity number: 207890 Chem Soc Rev View Article Online REVIEW ARTICLE View Journal | View Issue Amide activation: an emerging tool for chemoselective synthesis Cite this: Chem. Soc. Rev., 2018, 47,7899 Daniel Kaiser, Adriano Bauer, Miran Lemmerer and Nuno Maulide * It is textbook knowledge that carboxamides benefit from increased stabilisation of the electrophilic carbonyl carbon when compared to other carbonyl and carboxyl derivatives. This results in a considerably reduced reactivity towards nucleophiles. Accordingly, a perception has been developed of amides as significantly less useful functional handles than their ester and acid chloride counterparts. Received 27th April 2018 However, a significant body of research on the selective activation of amides to achieve powerful DOI: 10.1039/c8cs00335a transformations under mild conditions has emerged over the past decades. This review article aims at placing electrophilic amide activation in both a historical context and in that of natural product rsc.li/chem-soc-rev synthesis, highlighting the synthetic applications and the potential of this approach. Creative Commons Attribution 3.0 Unported Licence. -
(12) Patent Application Publication (10) Pub. No.: US 2005/0044778A1 Orr (43) Pub
US 20050044778A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2005/0044778A1 Orr (43) Pub. Date: Mar. 3, 2005 (54) FUEL COMPOSITIONS EMPLOYING Publication Classification CATALYST COMBUSTION STRUCTURE (51) Int. CI.' ........ C10L 1/28; C1OL 1/24; C1OL 1/18; (76) Inventor: William C. Orr, Denver, CO (US) C1OL 1/12; C1OL 1/26 Correspondence Address: (52) U.S. Cl. ................. 44/320; 44/435; 44/378; 44/388; HOGAN & HARTSON LLP 44/385; 44/444; 44/443 ONE TABOR CENTER, SUITE 1500 1200 SEVENTEENTH ST DENVER, CO 80202 (US) (57) ABSTRACT (21) Appl. No.: 10/722,127 Metallic vapor phase fuel compositions relating to a broad (22) Filed: Nov. 24, 2003 Spectrum of pollution reducing, improved combustion per Related U.S. Application Data formance, and enhanced Stability fuel compositions for use in jet, aviation, turbine, diesel, gasoline, and other combus (63) Continuation-in-part of application No. 08/986,891, tion applications include co-combustion agents preferably filed on Dec. 8, 1997, now Pat. No. 6,652,608. including trimethoxymethylsilane. Patent Application Publication Mar. 3, 2005 US 2005/0044778A1 FIGURE 1 CALCULATING BUNSEN BURNER LAMINAR FLAME VELOCITY (LFV) OR BURNING VELOCITY (BV) CONVENTIONAL FLAME LUMINOUS FLAME Method For Calculating Bunsen Burner Laminar Flame Velocity (LHV) or Burning Velocity Requires Inside Laminar Cone Angle (0) and The Gas Velocity (Vg). LFV = A, SIN 2 x VG US 2005/0044778A1 Mar. 3, 2005 FUEL COMPOSITIONS EMPLOYING CATALYST Chart of Elements (CAS version), and mixture, wherein said COMBUSTION STRUCTURE element or derivative compound, is combustible, and option 0001) The present invention is a CIP of my U.S. -
Pentachloride Hazard Summary Identification
Common Name: PHOSPHORUS PENTACHLORIDE CAS Number: 10026-13-8 RTK Substance number: 1525 DOT Number: UN 1806 Date: August 1999 ----------------------------------------------------------------------- ----------------------------------------------------------------------- HAZARD SUMMARY * Phosphorus Pentachloride can affect you when breathed * Exposure to hazardous substances should be routinely in. evaluated. This may include collecting personal and area * Phosphorus Pentachloride is a CORROSIVE air samples. You can obtain copies of sampling results CHEMICAL and contact can severely irritate and burn the from your employer. You have a legal right to this skin and eyes with possible eye damage. information under OSHA 1910.1020. * Breathing Phosphorus Pentachloride can irritate the nose * If you think you are experiencing any work-related health and throat. problems, see a doctor trained to recognize occupational * Breathing Phosphorus Pentachloride can irritate the diseases. Take this Fact Sheet with you. lungs causing coughing and/or shortness of breath. Higher exposures can cause a build-up of fluid in the lungs WORKPLACE EXPOSURE LIMITS (pulmonary edema), a medical emergency, with severe OSHA: The legal airborne permissible exposure limit shortness of breath. (PEL) is 1 mg/m3 averaged over an 8-hour * Exposure to Phosphorus Pentachloride can cause workshift. headache, dizziness, weakness, nausea and vomiting. * Phosphorus Pentachloride may damage the liver and NIOSH: The recommended airborne exposure limit is kidneys. 1 mg/m3 averaged over a 10-hour workshift. * Phosphorus Pentachloride is a REACTIVE CHEMICAL and an EXPLOSION HAZARD. ACGIH: The recommended airborne exposure limit is 0.85 mg/m3 averaged over an 8-hour workshift. IDENTIFICATION Phosphorus Pentachloride is a white to pale yellow, WAYS OF REDUCING EXPOSURE crystalline solid with a pungent odor. -
Phosphorous Acid
Phosphorous acid sc-286667 Material Safety Data Sheet Hazard Alert Code EXTREME HIGH MODERATE LOW Key: Section 1 - CHEMICAL PRODUCT AND COMPANY IDENTIFICATION PRODUCT NAME Phosphorous acid STATEMENT OF HAZARDOUS NATURE CONSIDERED A HAZARDOUS SUBSTANCE ACCORDING TO OSHA 29 CFR 1910.1200. NFPA FLAMMABILITY0 HEALTH3 HAZARD INSTABILITY1 SUPPLIER Santa Cruz Biotechnology, Inc. 2145 Delaware Avenue Santa Cruz, California 95060 800.457.3801 or 831.457.3800 EMERGENCY ChemWatch Within the US & Canada: 877-715-9305 Outside the US & Canada: +800 2436 2255 (1-800-CHEMCALL) or call +613 9573 3112 SYNONYMS H3-O3-P, H3PO3, "phosphonic acid", "orthophosphorous acid", "phosphorus trihydroxide", trihydroxyphosphine, "phosphorus acid (sic)", "o-phosphorous acid", "o-phosphorus acid (sic)" Section 2 - HAZARDS IDENTIFICATION CHEMWATCH HAZARD RATINGS Min Max Flammability: 0 Toxicity: 2 Body Contact: 4 Min/Nil=0 Low=1 Reactivity: 1 Moderate=2 High=3 Chronic: 2 Extreme=4 CANADIAN WHMIS SYMBOLS 1 of 9 EMERGENCY OVERVIEW RISK Harmful if swallowed. Causes severe burns. Risk of serious damage to eyes. May cause long-term adverse effects in the aquatic environment. Cumulative effects may result following exposure*. * (limited evidence). POTENTIAL HEALTH EFFECTS ACUTE HEALTH EFFECTS SWALLOWED ■ Accidental ingestion of the material may be harmful; animal experiments indicate that ingestion of less than 150 gram may be fatal or may produce serious damage to the health of the individual. ■ Ingestion of acidic corrosives may produce burns around and in the mouth, the throat and oesophagus. Immediate pain and difficulties in swallowing and speaking may also be evident. ■ As absorption of phosphates from the bowel is poor, poisoning this way is less likely. -
Ncomms12703.Pdf
ARTICLE Received 17 Feb 2016 | Accepted 26 Jul 2016 | Published 2 Sep 2016 DOI: 10.1038/ncomms12703 OPEN Chemoselective synthesis and analysis of naturally occurring phosphorylated cysteine peptides Jordi Bertran-Vicente1, Martin Penkert1,2, Olaia Nieto-Garcia1,2, Jean-Marc Jeckelmann3, Peter Schmieder1, Eberhard Krause1 & Christian P. R. Hackenberger1,2 In contrast to protein O-phosphorylation, studying the function of the less frequent N- and S-phosphorylation events have lagged behind because they have chemical features that prevent their manipulation through standard synthetic and analytical methods. Here we report on the development of a chemoselective synthetic method to phosphorylate Cys side-chains in unprotected peptides. This approach makes use of a reaction between nucleophilic phosphites and electrophilic disulfides accessible by standard methods. We achieve the stereochemically defined phosphorylation of a Cys residue and verify the modification using electron-transfer higher-energy dissociation (EThcD) mass spectrometry. To demonstrate the use of the approach in resolving biological questions, we identify an endogenous Cys phosphorylation site in IICBGlc, which is known to be involved in the carbohydrate uptake from the bacterial phosphotransferase system (PTS). This new chemical and analytical approach finally allows further investigating the functions and significance of Cys phosphorylation in a wide range of crucial cellular processes. 1 Leibniz-Institut fu¨r Molekulare Pharmakologie (FMP), Robert-Ro¨ssle-Str. 10, D-13125 Berlin, Germany. 2 Humboldt-Universita¨t zu Berlin, Institut fu¨r Chemie, Brook-Taylor-Str. 2, D-12489 Berlin, Germany. 3 Institute of Biochemistry and Molecular Medicine, University of Bern, 3012 Bern, Switzerland. Correspondence and requests for materials should be addressed to C.P.R.H. -
Organophosphate Insecticides
CHAPTER 4 HIGHLIGHTS Organophosphate Insecticides Acts through phosphorylation of the acetylcholinesterase enzyme Since the removal of organochlorine insecticides from use, organophosphate at nerve endings insecticides have become the most widely used insecticides available today. More Absorbed by inhalation, than forty of them are currently registered for use and all run the risk of acute ingestion, and skin and subacute toxicity. Organophosphates are used in agriculture, in the home, penetration in gardens, and in veterinary practice. All apparently share a common mecha- Muscarinic, nicotinic & CNS nism of cholinesterase inhibition and can cause similar symptoms. Because they effects share this mechanism, exposure to the same organophosphate by multiple routes or to multiple organophosphates by multiple routes can lead to serious additive Signs and Symptoms: toxicity. It is important to understand, however, that there is a wide range of Headache, hypersecretion, toxicity in these agents and wide variation in cutaneous absorption, making muscle twitching, nausea, specific identification and management quite important. diarrhea Respiratory depression, seizures, loss of consciousness Toxicology Miosis is often a helpful Organophosphates poison insects and mammals primarily by phosphory- diagnostic sign lation of the acetylcholinesterase enzyme (AChE) at nerve endings. The result is a loss of available AChE so that the effector organ becomes overstimulated by Treatment: the excess acetylcholine (ACh, the impulse-transmitting substance) in the nerve Clear airway, improve tissue ending. The enzyme is critical to normal control of nerve impulse transmission oxygenation from nerve fibers to smooth and skeletal muscle cells, glandular cells, and Administer atropine sulfate autonomic ganglia, as well as within the central nervous system (CNS). -
Pcls' Pocl3-VMR Patent Application Publication May 21, 2009 US 2009/0131653 A1
US 20090131653A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2009/0131653 A1 Ratnam et al. (43) Pub. Date: May 21, 2009 (54) GENERATION OF PHOSPHORUS (86) PCT No.: PCT/IN2006/000151 OXYCHLORIDE AS BY-PRODUCT FROM PHOSPHORUS PENTACHLORIDE AND DMF § 371 (OX1), AND ITS USE FOR CHLORINATION (2), (4) Date/1 Dec- 31, 2007 REACTION BY CONVERTING INTO (30) Foreign Application Priority Data VILSMEIER-HAACK REAGENT May 4, 2005 (IN) ......................... .. 545/MUM/2005 (75) Inventors: Rakesh Ratnam, Maharashtra (IN); Publication Classi?cation Aurora Sundeep, Maharashtra (51) Int Cl SE1); M‘illzamgifd M0?zuddm’ C07H 1/00 (2006.01) “as ra( ) 0070251/30 (2006.01) C d Add (52) US. Cl. ....................................... .. 536/124; 564/278 orrespon ence ress: THENATHLAWGROUP (57) ABSTRACT 112 south West street A process is described Wherein after formation of ?rst crop of AleXandria, VA 22314 (Us) Vilsmeier-Haack reagent by reacting Phosphorus Pentachlo ride With N,N-dimethylformamide to form a ?rst crop of 73 A - ; PHARMEDMEDICARE Vilsmeier rea g ent as insoluble c rY stals ’ a b YP- roduct of this ( ) sslgnee PRIVATE LIMITED Mumbai reaction, the Phosphorus Oxy-Chloride, reacts With N,N (IN) ’ dimethylformamide to give a second crop of Vilsmeier reagent. This second crop of Vilsmeier reagent is soluble in DMF. This process makes it possible to double the yield of (21) APP1- N04 11/919,826 chlorinated substrate, such as sucrose-6-acetate or sucrose-6 benZoate, from the same quantity of Phosphorus Pentachlo (22) PCT Filed: Apr. 28, 2006 ride : Mechanism of Combined Vilsmeier Reagent for the Chlorination of sugars.