Diagnostic Utility of Biomarkers in COPD
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
PDF, Evaluation of Ceruloplasmin Ferroxidase Activity and Lipid Profiles
Journal of Physics: Conference Series PAPER • OPEN ACCESS Evaluation of Ceruloplasmin ferroxidase activity and lipid profiles in patients with Valvular heart diseases To cite this article: H K Sacheat et al 2021 J. Phys.: Conf. Ser. 1879 022066 View the article online for updates and enhancements. This content was downloaded from IP address 170.106.202.126 on 24/09/2021 at 22:30 Ibn Al-Haitham International Conference for Pure and Applied Sciences (IHICPS) IOP Publishing Journal of Physics: Conference Series 1879 (2021) 022066 doi:10.1088/1742-6596/1879/2/022066 Evaluation of Ceruloplasmin ferroxidase activity and lipid profiles in patients with Valvular heart diseases H K Sacheat1, S Z Hussein1*and S S Al-Mudhaffar2 1 Department of Chemistry, College of Sciences, University of Baghdad 2 Ibn Al-Bitar Specialized Cardiac Surgery Centre / Baghdad - Iraq *E.mail : [email protected] Abstract. One of the major health problems causing defects or damage to one or more of the four heart valves [aortic, mitral, pulmonary, and tricuspid] is valvular heart disease [VHD]; it occurs due to congenital abnormalities or acquired pathology. It is a defect that results in weak heart valves and is therefore unable to function as precise pathways of the blood. The aim of the current study was to evaluate the ferroxidase activity of ceruloplasmin (Cp) and the lipid profile of valvular heart disease patients in sera. Ninety subjects were included in this study and 60 patients with HDV were divided into two subgroups according to the affected valve: 33 patients with aortic valve disease (AV) and 27 patients with mitral valve disease (MV group). -
Fragment of Human Ceruloplasmin (Protein Structure/Ferroxidase/Copper Binding/Genetic Polymorphism/Evolution) I
Proc. Natl. Acad. Sci. USA Vol. 76, No. 4, pp. 1668-1672, April 1979 Biochemistry Complete amino acid sequence of a histidine-rich proteolytic fragment of human ceruloplasmin (protein structure/ferroxidase/copper binding/genetic polymorphism/evolution) I. BARRY KINGSTON*, BRIONY L. KINGSTONt, AND FRANK W. PUTNAMt Department of Biology, Indiana University, Bloomington, Indiana 47405 Contributed by Frank W. Putnam, January 22, 1979 ABSTRACT The complete amino acid sequence has been a chain of human ceruloplasmin studied by McCombs and determined for a fragment of human ceruloplasmin [ferroxidase; Bowman (6) and probably corresponds to the a subunit pro- iron(II)oxygen oxidoreductase, EC 1.16.3.1]. The fragment posed by Simons and Bearn (4) and the chain of (designated Cp F5) contains 159 amino acid residues and has light Freeman a molecular weight of 18,650; it lacks carbohydrate, is rich in and Daniel (5). histidine, and contains one free cysteine that may be part of a The relation of Cp F5 to the structure of the intact cerulo- copper-binding site. This fragment is present in most commer- plasmin chain has to be deduced from indirect observations cial preparations of ceruloplasmin, probably owing to proteo- because of the small amount of single-chain ceruloplasmin lytic degradation, but can also be obtained by limited cleavage available to us and the strong interaction of the fragments. From of single-chain ceruloplasmin with plasmin. Cp F5 probably is the kinetics of the proteolytic cleavage of intact ceruloplasmin an intact domain attached to the COOH-terminal end of sin- gle-chain ceruloplasmin via a labile interdomain peptide bond. -
Electron Transfer and Substrate Reduction in Nitrogenase
Utah State University DigitalCommons@USU All Graduate Theses and Dissertations Graduate Studies 5-2014 Electron Transfer and Substrate Reduction in Nitrogenase Karamatullah Danyal Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/etd Part of the Biochemistry Commons Recommended Citation Danyal, Karamatullah, "Electron Transfer and Substrate Reduction in Nitrogenase" (2014). All Graduate Theses and Dissertations. 2181. https://digitalcommons.usu.edu/etd/2181 This Dissertation is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Theses and Dissertations by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. ELECTRON TRANSFER AND SUBSTRATE REDUCTON IN NITROGENASE by Karamatullah Danyal A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in Biochemistry Approved: ________________________ _______________________ Lance C. Seefeldt Scott A. Ensign Major Professor Committee Member ________________________ _______________________ Alvan C. Hengge Sean J. Johnson Committee Member Committee Member ________________________ _______________________ Korry Hintze Mark R. McLellan Committee Member Vice President for Research and Dean of the School of Graduate Studies UTAH STATE UNIVERSITY Logan, Utah 2014 ii Copyright © Karamatullah Danyal 2014 All Rights Reserved iii ABSTRACT Electron Transfer and Substrate Reduction in Nitrogenase by Karamatullah Danyal, Doctor of Philosophy Utah State University, 2014 Major Professor: Dr. Lance C. Seefeldt Department: Chemistry and Biochemistry Population growth over the past ~50 years accompanied by the changes in dietary habits due to economic growth have markedly increased the demand for fixed nitrogen. Aided by biological nitrogen fixation, the Haber-Bosch process has been able to fulfill these demands. -
12) United States Patent (10
US007635572B2 (12) UnitedO States Patent (10) Patent No.: US 7,635,572 B2 Zhou et al. (45) Date of Patent: Dec. 22, 2009 (54) METHODS FOR CONDUCTING ASSAYS FOR 5,506,121 A 4/1996 Skerra et al. ENZYME ACTIVITY ON PROTEIN 5,510,270 A 4/1996 Fodor et al. MICROARRAYS 5,512,492 A 4/1996 Herron et al. 5,516,635 A 5/1996 Ekins et al. (75) Inventors: Fang X. Zhou, New Haven, CT (US); 5,532,128 A 7/1996 Eggers Barry Schweitzer, Cheshire, CT (US) 5,538,897 A 7/1996 Yates, III et al. s s 5,541,070 A 7/1996 Kauvar (73) Assignee: Life Technologies Corporation, .. S.E. al Carlsbad, CA (US) 5,585,069 A 12/1996 Zanzucchi et al. 5,585,639 A 12/1996 Dorsel et al. (*) Notice: Subject to any disclaimer, the term of this 5,593,838 A 1/1997 Zanzucchi et al. patent is extended or adjusted under 35 5,605,662 A 2f1997 Heller et al. U.S.C. 154(b) by 0 days. 5,620,850 A 4/1997 Bamdad et al. 5,624,711 A 4/1997 Sundberg et al. (21) Appl. No.: 10/865,431 5,627,369 A 5/1997 Vestal et al. 5,629,213 A 5/1997 Kornguth et al. (22) Filed: Jun. 9, 2004 (Continued) (65) Prior Publication Data FOREIGN PATENT DOCUMENTS US 2005/O118665 A1 Jun. 2, 2005 EP 596421 10, 1993 EP 0619321 12/1994 (51) Int. Cl. EP O664452 7, 1995 CI2O 1/50 (2006.01) EP O818467 1, 1998 (52) U.S. -
Biochemical, Kinetic and Spectroscopic Characterizations Of
BIOCHEMICAL, KINETIC AND SPECTROSCOPIC CHARACTERIZATIONS OF NON-HEME IRON OXYGENASE ENZYMES by BISHNU P SUBEDI Presented to the Faculty of the Graduate School of Science The University of Texas at Arlington in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY THE UNIVERSITY OF TEXAS AT ARLINGTON May 2015 Copyright © by Bishnu P Subedi 2014 All Rights Reserved ii Acknowledgements I would like to express my greatest appreciation and thanks to my advisor Professor Brad S Pierce for giving me the opportunity to work in his lab and providing valuable guidance and encouragement during the research period. I would also like to thank Professor Frank W Foss both for being a member in my thesis committee and a collaborator on MiaE project. My sincerest thanks goes to Professor Frederick MacDonnell for his valuable suggestions as a chair in my thesis committee. I also thank the Department of Chemistry and Biochemistry at The University of Texas at Arlington for supporting my graduate study, the UTA Shimadzu Center for Advanced Analytical Chemistry for the use of HPLC and LC-MS/MS instrumentation utilized in this work, and the UTA Center for Nanostructured Materials for the use of EPR facilities. I would also like to thank Professor Paul Lindahl and Dr. Mrinmoy Chakrabarti, Texas A&M University for their generous assistance in collecting Mössbauer spectra for MiaE, similarly Professor Brian Fox and Justin Acheson, University of Wisconsin, Madison for collaboration on MiaE structural study and Professor Tim Larson, Virginia Tech Department of Biochemistry for the IPTG inducible Azotobacter vinelandii CDO expression vector. -
Analysis of the Roles of a Monothiol Glutaredoxin and Glutathione Synthetase in The
Analysis of the roles of a monothiol glutaredoxin and glutathione synthetase in the virulence of the AIDS-associated pathogen Cryptococcus neoformans by Rodgoun Attarian M.Sc., The University of British Columbia, 2009 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE AND POSTDOCTORAL STUDIES (Microbiology and Immunology) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) March 2016 © Rodgoun Attarian, 2016 Abstract Cryptococcus neoformans is a fungal pathogen and the causative agent of meningoencephalitis in immunocompromised and AIDS patients. Iron acquisition and the maintenance of iron homeostasis in C. neoformans are important aspects of virulence. Here, the monothiol glutaredoxin Grx4 was identified as a binding partner of Cir1, the master regulator of iron-responsive genes and virulence factor expression in C. neoformans. We confirmed that Grx4 binds Cir1 in vitro and in a yeast two-hybrid assay. RNA-Seq performed on the grx4 and cir1 mutants, and the WT strain, under low or high iron conditions identified genes involved in iron metabolism and expanded the concept that Grx4 plays a central role in iron homeostasis. A grx4 mutant, with deletion of the glutaredoxin domain, displayed iron-related phenotypes similar to those of a cir1 mutant, including elevated activity for cell surface reductases, sensitivity to high iron levels and increased susceptibility to phleomycin. Importantly it was shown that a grx4 mutant was avirulent in a mouse model of infection. We also observed that after 48 hour of starvation grx4 mutant had a growth defect in an iron-supplemented media. Interestingly, the growth defect of the grx4 mutant was rescued by exogenous GSH. -
Cellular Iron Homeostasis
BioIron 2017 Educational Session Cellular iron metabolism Kostas Pantopoulos Lady Davis Institute for Medical Research Division of Experimental Medicine Montreal, Quebec, Canada The problem of iron acquisition Iron is an abundant metal, but… In aqueous solutions, Fe2+ is readily oxidized to Fe3+ 3+ At neutral pH, Fe forms essentially insoluble Fe(OH)3 Iron’s bioavailability is limited Strategies for iron acquisition (1): direct iron transport 1. Reduction of Fe3+ to Fe2+ in the vicinity of the cell by plasma membrane-bound ferric reductases Frep Fre reductases 2. Direct uptake by low affinity (Km=40 mM) ferrous transporter Fet4p or Reoxidation by plasma membrane-bound ferroxidase Fet3p and internalization by permease Ftr1p in a high affinity transporting system (K =0.15 mM) Fet3 oxidase/Ftr1 permease m Strategies for iron acquisition (2): indirect iron uptake Many bacteria and lower eukaryotes secrete siderophores (low molecular weight Fe3+ chelators) Iron-loaded siderophores are internalized into the bacteria by binding to specific cell-surface receptors Deferroxamine, a bacterial siderophore, is widely employed for iron chelation therapy deferroxamine (desferral) Iron assimilation in higher organisms Both concepts: Direct iron transport by trans-membrane transporters, following reduction to soluble Fe2+ and Receptor-mediated uptake of iron, that is “captured” in form of Fe3+ by an iron-binding molecule have been conserved in higher organisms Direct iron transport is critical for dietary iron absorption Iron absorption from intestinal -
Studies of the Ferroxidase Activity of Native and Chemically Modified Xanthine Oxidoreductase
Biochem. J. (1986) 235, 39-44 (Printed in Great Britain) 39 Studies of the ferroxidase activity of native and chemically modified xanthine oxidoreductase Richard W. TOPHAM,* Mark R. JACKSON, Scott A. JOSLIN and Mark C. WALKER Department of Chemistry, University of Richmond, Richmond, VA 23173, U.S.A. The 02-utilizing (type 0, oxidase) form ofxanthine oxidoreductase is primarily responsible for its ferroxidase activity. This form ofxanthine oxidoreductase has 1000 times the ferroxidase activity ofthe serum ferroxidase caeruloplasmin. It has the ability to catalyse the oxidative incorporation of iron into transferrin at very low Fe2+ and 02 concentrations. Furthermore, the pH optimum of the ferroxidase activity of the enzyme is compatible with the conditions of pH that normally exist in the intestinal mucosa, where it has been proposed that xanthine oxidoreductase may facilitate the absorption of ionic iron. Modification of the molybdenum (Mb) centres of the enzyme in vitro by treatment with cyanide, methanol or allopurinol completely abolishes its ferroxidase activity. The feeding of dietary tungsten to rats, which prevents the incorporation of molybdenum into newly synthesized intestinal xanthine oxidoreductase, results in the progressive loss of the ferroxidase activity of intestinal-mucosa homogenates. Removal of the flavin centres from the enzyme also results in the complete loss of ferroxidase activity; however, the ferroxidase activity of the flavin-free form of the enzyme can be restored with artificial electron acceptors that interact with the molybdenum or non-haem iron centres. The presence ofsuperoxide dismutase or catalase in the assay system results in little inhibition of the ferroxidase activity of xanthine oxidoreductase. -
All Enzymes in BRENDA™ the Comprehensive Enzyme Information System
All enzymes in BRENDA™ The Comprehensive Enzyme Information System http://www.brenda-enzymes.org/index.php4?page=information/all_enzymes.php4 1.1.1.1 alcohol dehydrogenase 1.1.1.B1 D-arabitol-phosphate dehydrogenase 1.1.1.2 alcohol dehydrogenase (NADP+) 1.1.1.B3 (S)-specific secondary alcohol dehydrogenase 1.1.1.3 homoserine dehydrogenase 1.1.1.B4 (R)-specific secondary alcohol dehydrogenase 1.1.1.4 (R,R)-butanediol dehydrogenase 1.1.1.5 acetoin dehydrogenase 1.1.1.B5 NADP-retinol dehydrogenase 1.1.1.6 glycerol dehydrogenase 1.1.1.7 propanediol-phosphate dehydrogenase 1.1.1.8 glycerol-3-phosphate dehydrogenase (NAD+) 1.1.1.9 D-xylulose reductase 1.1.1.10 L-xylulose reductase 1.1.1.11 D-arabinitol 4-dehydrogenase 1.1.1.12 L-arabinitol 4-dehydrogenase 1.1.1.13 L-arabinitol 2-dehydrogenase 1.1.1.14 L-iditol 2-dehydrogenase 1.1.1.15 D-iditol 2-dehydrogenase 1.1.1.16 galactitol 2-dehydrogenase 1.1.1.17 mannitol-1-phosphate 5-dehydrogenase 1.1.1.18 inositol 2-dehydrogenase 1.1.1.19 glucuronate reductase 1.1.1.20 glucuronolactone reductase 1.1.1.21 aldehyde reductase 1.1.1.22 UDP-glucose 6-dehydrogenase 1.1.1.23 histidinol dehydrogenase 1.1.1.24 quinate dehydrogenase 1.1.1.25 shikimate dehydrogenase 1.1.1.26 glyoxylate reductase 1.1.1.27 L-lactate dehydrogenase 1.1.1.28 D-lactate dehydrogenase 1.1.1.29 glycerate dehydrogenase 1.1.1.30 3-hydroxybutyrate dehydrogenase 1.1.1.31 3-hydroxyisobutyrate dehydrogenase 1.1.1.32 mevaldate reductase 1.1.1.33 mevaldate reductase (NADPH) 1.1.1.34 hydroxymethylglutaryl-CoA reductase (NADPH) 1.1.1.35 3-hydroxyacyl-CoA -
Isolation and Characterization of the Serum Ferroxidase Inhibitor Melissa Page Calisch
University of Richmond UR Scholarship Repository Master's Theses Student Research 9-1982 Isolation and characterization of the serum ferroxidase inhibitor Melissa Page Calisch Follow this and additional works at: http://scholarship.richmond.edu/masters-theses Recommended Citation Calisch, Melissa Page, "Isolation and characterization of the serum ferroxidase inhibitor" (1982). Master's Theses. Paper 486. This Thesis is brought to you for free and open access by the Student Research at UR Scholarship Repository. It has been accepted for inclusion in Master's Theses by an authorized administrator of UR Scholarship Repository. For more information, please contact [email protected]. ISOLATION AND CHARACTERIZATION OF THE SERUM FEROOXIDASE INHIBrroR A THESIS SUIMr'l'TED TO THE DEPARTMENT OF CHEKrSTRY OF THE GRAOOATE SCHOOL OF THE UNIVERSITY OF RICHMOND IN PARTIAL Ft.JLFILUmNT OF THE ~R»mNTS FOR Tim DEGREE OF MASTER OF SCIENCE by MELISSA PAGE CALISCH f fl?. 1~/"' ~ <l~l ~~ LIRRARY \JNIVC.i!SITY OF RICHMOND VIRGINIA i m:OGRAPHICAL SKETCH Melissa Page caJ.isch was born on April 20, 1953 in Richm:md, Virginia to Page Dabney and Elliott Woolner Calisch. She completed her primary and secondary education in Ric:tuoond. After high school, she attended Westhampton College of the University of RichnYJnd where she majored in Chemistry. In Jmie, 1974 she attended the School of Medical Technology of the Medical College of Virginia from which she received the Bachelor of ~ience degree in May or 1975· In August of 1975 she received the Bachelor of Science degree from the University of RichJOOnd. In October 1975, the author began work as a chemist for the Department of Pharmacy or the Medical College of Virginia. -
Biogenesis of Iron-Sulfur Clusters and Intracellular Iron Metabolism
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2009 Biogenesis of iron-sulfur clusters and intracellular iron metabolism Jacob Philip Bitoun Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Bitoun, Jacob Philip, "Biogenesis of iron-sulfur clusters and intracellular iron metabolism" (2009). LSU Doctoral Dissertations. 670. https://digitalcommons.lsu.edu/gradschool_dissertations/670 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. BIOGENESIS OF IRON-SULFUR CLUSTERS AND INTRACELLULAR IRON METABOLISM A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences By Jacob Philip Bitoun B.S., Louisiana State University, 2004 August, 2009 ACKNOWLEDGEMENTS In retrospect, it has become evident that I would not have been able to complete this journey through graduate school without the help of many people. I would like to thank my major professor, Dr. Huangen Ding, for his patience and mentorship. Only now, as a Ph.D candidate, do I realize how much time and commitment he has invested into me and my research. I would like to thank my committee members: Dr. John R. Battista, Dr. Joomyeong Kim, Dr. Yong-Hwan Lee, and Dr. -
The Dps4 from Nostoc Punctiforme ATCC 29133 Is a Member of His-Type FOC Containing Dps
bioRxiv preprint doi: https://doi.org/10.1101/656892; this version posted May 31, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 2 The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps 3 protein class that can be broadly found among cyanobacteria 4 5 Christoph Howe1, Vamsi K. Moparthi1#, Felix M. Ho1, Karina Persson2* and Karin Stensjö1* 6 7 1Department of Chemistry-Ångström Laboratory, Uppsala University, Uppsala, Sweden 8 2Department of Chemistry, Umeå University, Umeå, Sweden 9 10 #Current address: Department of Physics, Chemistry and Biology, Division of Chemistry, 11 Linköping University, Linköping, Sweden. 12 13 *Corresponding authors: 14 E-mail: [email protected] (KS), [email protected] (KP) 15 16 17 18 19 20 21 22 23 1 bioRxiv preprint doi: https://doi.org/10.1101/656892; this version posted May 31, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 24 Abstract 25 Dps proteins (DNA-binding proteins from starved cells) have been found to detoxify H2O2. At 2+ 26 their catalytic centers, the ferroxidase center (FOC), Dps proteins utilize Fe to reduce H2O2 27 and therefore play an essential role in the protection against oxidative stress and maintaining 28 iron homeostasis.