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<I>Tilletia Indica</I>
ISPM 27 27 ANNEX 4 ENG DP 4: Tilletia indica Mitra INTERNATIONAL STANDARD FOR PHYTOSANITARY MEASURES PHYTOSANITARY FOR STANDARD INTERNATIONAL DIAGNOSTIC PROTOCOLS Produced by the Secretariat of the International Plant Protection Convention (IPPC) This page is intentionally left blank This diagnostic protocol was adopted by the Standards Committee on behalf of the Commission on Phytosanitary Measures in January 2014. The annex is a prescriptive part of ISPM 27. ISPM 27 Diagnostic protocols for regulated pests DP 4: Tilletia indica Mitra Adopted 2014; published 2016 CONTENTS 1. Pest Information ............................................................................................................................... 2 2. Taxonomic Information .................................................................................................................... 2 3. Detection ........................................................................................................................................... 2 3.1 Examination of seeds/grain ............................................................................................... 3 3.2 Extraction of teliospores from seeds/grain, size-selective sieve wash test ....................... 3 4. Identification ..................................................................................................................................... 4 4.1 Morphology of teliospores ................................................................................................ 4 4.1.1 Morphological -
Use of Whole Genome Sequence Data to Characterize Mating and Rna
USE OF WHOLE GENOME SEQUENCE DATA TO CHARACTERIZE MATING AND RNA SILENCING GENES IN TILLETIA SPECIES By SEAN WESLEY MCCOTTER A thesis submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE IN PLANT PATHOLOGY WASHINGTON STATE UNIVERSITY Department of Plant Pathology DECEMBER 2014 © Copyright by SEAN WESLEY MCCOTTER, 2014 All Rights Reserved © Copyright by SEAN WESLEY MCCOTTER, 2014 All Rights Reserved To the Faculty of Washington State University: The members of the Committee appointed to examine the thesis of SEAN WESLEY MCCOTTER find it satisfactory and recommend that it be accepted. Lori M. Carris, Ph.D., Chair Dorrie Main, Ph.D. Patricia Okubara, Ph.D. Lisa A. Castlebury, Ph. D. ii ACKNOWLEDGMENTS The research presented in this thesis could not have been carried out without the expertise and cooperation of others in the scientific community. Significant contributions were made by colleagues here at Washington State University, at the United States Department of Agriculture and at Agriculture and Agri-Food Canada. I would like to start by thanking my committee members Dr. Lori Carris, Dr. Lisa Castlebury, Dr. Pat Okubara and Dr. Dorrie Main, who provided guidance on procedure, feedback on my research as well as contacts and laboratory resources. Dr. André Lévesque of AAFC initially alerted me to the prospect of collaboration with other AAFC Tilletia researchers and placed me in contact with Dr. Sarah Hambleton, whose lab sequenced four out of five strains of Tilletia used in this study (CSSP CRTI 09-462RD). Dr. Prasad Kesanakurti and Jeff Cullis coordinated my access to AAFC’s genome and transcriptome data for these species. -
Nonsystemic Bunt Fungi—Tilletia Indica and T. Horrida: a Review of History, Systematics, and Biology∗
ANRV283-PY44-05 ARI 7 February 2006 20:39 V I E E W R S I E N C N A D V A Nonsystemic Bunt Fungi—Tilletia indica and T. horrida: A Review of History, Systematics, and Biology∗ Lori M. Carris,1 Lisa A. Castlebury,2 and Blair J. Goates3 1Department of Plant Pathology, Washington State University, Pullman, Washington 99164-6430; email: [email protected] 2USDA ARS Systematic Botany and Mycology Laboratory, Beltsville, Maryland 20705-2350; email: [email protected] 3USDA ARS National Small Grains Germplasm Research Facility, Aberdeen, Idaho 82310; email: [email protected] Annu. Rev. Phytopathol. Key Words 2006. 44:5.1–5.21 Karnal bunt, Neovossia, rice kernel smut, Tilletia walkeri, Tilletiales The Annual Review of Phytopathology is online at phyto.annualreviews.org Abstract doi: 10.1146/ The genus Tilletia is a group of smut fungi that infects grasses either annurev.phyto.44.070505.143402 systemically or locally. Basic differences exist between the systemi- Copyright c 2006 by cally infecting species, such as the common and dwarf bunt fungi, and Annual Reviews. All rights locally infecting species. Tilletia indica, which causes Karnal bunt of reserved wheat, and Tilletia horrida, which causes rice kernel smut, are two ex- 0066-4286/06/0908- amples of locally infecting species on economically important crops. 0001-$20.00 However, even species on noncultivated hosts can become important ∗ The U.S. Government when occurring as contaminants in export grain and seed shipments. has the right to retain a nonexclusive, royalty-free In this review, we focus on T. indica and the morphologically similar license in and to any but distantly related T. -
DP 4: Tilletia Indica Mitra INTERNATIONAL STANDARD for PHYTOSANITARY MEASURES PHYTOSANITARY for STANDARD INTERNATIONAL DIAGNOSTIC PROTOCOLS
ISPM 27 27 ANNEX 4 ENG DP 4: Tilletia indica Mitra INTERNATIONAL STANDARD FOR PHYTOSANITARY MEASURES PHYTOSANITARY FOR STANDARD INTERNATIONAL DIAGNOSTIC PROTOCOLS Produced by the Secretariat of the International Plant Protection Convention (IPPC) This page is intentionally left blank This diagnostic protocol was adopted by the Standards Committee on behalf of the Commission on Phytosanitary Measures in January 2014. The annex is a prescriptive part of ISPM 27. ISPM 27 Diagnostic protocols for regulated pests DP 4: Tilletia indica Mitra Adopted 2014; published 2016 CONTENTS 1. Pest Information ............................................................................................................................... 2 2. Taxonomic Information .................................................................................................................... 2 3. Detection ........................................................................................................................................... 2 3.1 Examination of seeds/grain ............................................................................................... 3 3.2 Extraction of teliospores from seeds/grain, size-selective sieve wash test ....................... 3 4. Identification ..................................................................................................................................... 4 4.1 Morphology of teliospores ................................................................................................ 4 4.1.1 Morphological -
Diagnostic Protocol for Tilletia Indica, the Cause of Karnal Bunt
Diagnostic protocol for Tilletia indica, the cause of karnal bunt The International Diagnostic Protocol for Tilletia indica (ISPM-27 DP04) was released March 2014 https://www.ippc.int/en/publications/2457/ PEST STATUS Not present in Australia PROTOCOL NUMBER NDP 19 VERSION NUMBER V1.3 PROTOCOL STATUS Endorsed ISSUE DATE 2012 REVIEW DATE 2017 ISSUED BY SPHDS Prepared for the Subcommittee on Plant Health Diagnostic Standards (SPHDS) This version of the National Diagnostic Protocol (NDP) for karnal bunt is current as at the date contained in the version control box on the front of this document. NDPs are updated every 5 years or before this time if required (i.e. when new techniques become available). The most current version of this document is available from the SPHDS website: http://plantbiosecuritydiagnostics.net.au/resource-hub/priority-pest-diagnostic-resources/ Where an IPPC diagnostic protocol exists it should be used in preference to the NDP. NDPs may contain additional information to aid diagnosis. IPPC protocols are available on the IPPC website: https://www.ippc.int/core-activities/standards-setting/ispms Contents 1 Introduction .................................................................................................................... 1 1.1 General introduction ................................................................................................ 1 1.2 Host range .............................................................................................................. 2 1.3 Symptoms .............................................................................................................. -
HOST SPECIFICITY and PHYLOGENETIC RELATIONSHIPS AMONG TILLETIA SPECIES INFECTING WHEAT and OTHER COOL SEASON GRASSES by XIAODO
HOST SPECIFICITY AND PHYLOGENETIC RELATIONSHIPS AMONG TILLETIA SPECIES INFECTING WHEAT AND OTHER COOL SEASON GRASSES By XIAODONG BAO A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY WASHINGTON STATE UNIVERSITY Department of Plant Pathology DECEMBER 2010 To the Faculty of Washington State University: The members of the Committee appointed to examine the dissertation of XIAODONG BAO find it satisfactory and recommend that it be accepted. Lori M. Carris, Ph.D., Chair Tobin L. Peever, Ph.D. Jack D. Rogers, Ph.D. Scot H. Hulbert, Ph.D. ii ACKNOWLEDGEMENTS I would like to express the deepest gratitude to my major advisor Dr. Lori M. Carris, for her persistent guidance, support and encouragement which make it possible to this dissertation. Her enthusiasm for research and excitement in teaching continuously provide inspiration and motivation for my academic goals. I would like to give the most sincere thanks to the members of my dissertation committee, Drs. Tobin L. Peever, Jack D. Rogers and Scot H. Hulbert, for their insightful suggestions to my research and critical review of the dissertation. I am heartily thankful to Dr. Lisa A. Castlebury (USDA-ARS, Baltimore, Maryland) for generously providing sequencing facilities and guidance for my research. I appreciate Mr. Blair J. Goates (USDA-ARS, Aberdeen, ID) for hosting our visit to National Small Grains Collections and providing a treasure of wheat bunt collections for my research. My thanks also go to Drs. Kálmán Vánky (Herbarium Ustilaginales Vánky, Germany), Lennart Johnsson (Plant Pathology and Biocontrol Unit, SLU, Sweden), Veronika Dumalasová (Research Institute of Crop Production, Czech Republic) and Denis A. -
Normes OEPP EPPO Standards
© 2004 OEPP/EPPO, Bulletin OEPP/EPPO Bulletin 34, 155 –157 Blackwell Publishing, Ltd. Organisation Européenne et Méditerranéenne pour la Protection des Plantes European and Mediterranean Plant Protection Organization Normes OEPP EPPO Standards Diagnostic protocols for regulated pests Protocoles de diagnostic pour les organismes réglementés PM 7/29 Organization Européenne et Méditerranéenne pour la Protection des Plantes 1, rue Le Nôtre, 75016 Paris, France 155 156 Diagnostic protocols Approval • laboratory procedures presented in the protocols may be adjusted to the standards of individual laboratories, provided EPPO Standards are approved by EPPO Council. The date of that they are adequately validated or that proper positive and approval appears in each individual standard. In the terms of negative controls are included. Article II of the IPPC, EPPO Standards are Regional Standards for the members of EPPO. References Review EPPO/CABI (1996) Quarantine Pests for Europe, 2nd edn. CAB Interna- tional, Wallingford (GB). EPPO Standards are subject to periodic review and amendment. EU (2000) Council Directive 2000/29/EC of 8 May 2000 on protective The next review date for this EPPO Standard is decided by the measures against the introduction into the Community of organisms EPPO Working Party on Phytosanitary Regulations harmful to plants or plant products and against their spread within the Community. Official Journal of the European Communities L169, 1–112. FAO (1997) International Plant Protection Convention (new revised text). Amendment record FAO, Rome (IT). IPPC (1993) Principles of plant quarantine as related to international trade. Amendments will be issued as necessary, numbered and dated. ISPM no. 1. IPPC Secretariat, FAO, Rome (IT). -
National Agricultural Biosecurity Center Consortium
Pathways Analyses for the Introduction to the U.S. of Plant Pathogens of Economic Importance Prepared by the National Agricultural Biosecurity Center Consortium Kansas State University Purdue University Texas A&M University August 2004 List of Contributors Kansas State University Karen A. Garrett (POC) John C. Reese (POC) Leslie R. Campbell Shauna P. Dendy J.M. Shawn Hutchinson Nancy J. Leathers Brooke Stansberry Purdue University Ray Martyn (POC) Don Huber Lynn Johal Texas A&M University Joseph P. Krausz (POC) David N. Appel Elena Kolomiets Jerry Trampota Project Manager Jan M. Sargeant, DVM, MSc, PhD, Kansas State University and McMaster University, Hamilton, Canada List of Contributors 1/1 Plant Pathways Analysis Table of Contents List of Contributors.............................................................................i-1 Methodology for Pathway Analysis of an Intentionally Introduced Plant Pathogen ...........................................................ii-1 A Conceptual Framework for the Analyses of Pathways for the Introduction of Plant Pathogens .................................................iii-1 SOYBEAN Mosaic Virus...................................................................................1-1 Rust.................................................................................................2-1 CORN Late Wilt..........................................................................................3-1 Philippine Downy Mildew .............................................................4-1 RICE Bacterial Leaf -
NAPPO Standards for Phytosanitary Measures (RSPM)
NAPPO Standards for Phytosanitary Measures (RSPM) RSPM 21 A Harmonized Procedure for Morphologically Distinguishing Teliospores of Karnal Bunt from Ryegrass Bunt, Rice Smut and Similar Smuts The Secretariat of the North American Plant Protection Organization 1431 Merivale Road, 3rd Floor, Room 140 Ottawa K1A 0Y9 Canada 2014 Publication history: This is not an official part of the standard. Approved: October 17, 1999 Revised: August 10, 2009 Review initiated: 18-11-2013– updated editorial formatting (RLee) Revision by Expert Group initiated: 29-01-2014; finalized 02-10-2014 Submitted to Working Group and Executive Committee: 20-10-2014 RSPM 21 A Harmonized Procedure for Morphologically Distinguishing Teliospores of Karnal Bunt, Ryegrass Bunt, Rice Bunt and Similar Smuts 2 Contents Page Review ..................................................................................................................................4 Approval ...............................................................................................................................4 Implementation .....................................................................................................................4 Amendment Record ..............................................................................................................4 Distribution ............................................................................................................................4 Introduction ...........................................................................................................................5 -
A Disease Predictive Model for Chemotherapy of Karnal Bunt of Wheat
A DISEASE PREDICTIVE MODEL FOR CHEMOTHERAPY OF KARNAL BUNT OF WHEAT By Muhammad Abdul Shakoor M.Sc. (Hons) Agri. A thesis submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY IN Plant Pathology FACULTY OF AGRICULTURE, UNIVERSITY OF AGRICULTURE, FAISALABAD 2009 To The Controller of Examinations, University of Agriculture, Faisalabad We, the supervisory committee, certify that the contents and the form of the thesis submitted by Mr. Muhammad Abdul Shakoor Regd. No 85-ag-1234 have been found satisfactory and recommend that it be processed for evaluation by the External Examiner(s) for the award of degree. CHAIRMAN ___________________ Dr. MUHAMMAD ASLAM KHAN MEMBER ___________________ Dr. NAZIR JAVID MEMBER ___________________ Dr. MUHAMMAD JALAL ARIF Contents CHAPTER Title Page 1 INTRODUCTION 1 2 REVIEW OF LITERATURE 5 2.1 History and geographical distribution 5 2.2 Survey and economic losses 8 2.3 Taxonomic status 15 2.4 Symptoms of the disease 15 2.5 Host range 16 2.5.1 Biology of Tilletia indica 16 2.5.2 Dispersal of teliospores 16 2.5.3 Teliospore dormancy 17 2.5.4 Nature of teliospores and their survival in the soil 18 2.5.5 Teliospores germination 20 2.5.6 Dispersal of sporadia from soil level to ear head 21 2.6 Infection process 22 2.6.1 Epidemiology and disease prediction models 24 2.7 The Humid Thermal Index (HTI) model as a tool for 28 determination of potential disease distribution 2.8 Sources of genetics resistance against the disease 35 2.9 Chemical control of the disease 40 3.0 MATERIALS -
[G] [1] Electronic Certification, Information on Standard XML Schemas and Exchange Mechanisms (Draft Appendix 1 to ISPM 12:2011)
[8] NPPOs should use the World Wide Web Consortium (WC3) Extensible Markup Language (XML) (Link 1) as the standardized language for exchange of electronic certificate data between NPPOs; the data should be [G] standardized in the format of the United Nations Centre for Trade Facilitation and Electronic Business (UN/CEFACT) Sanitary and Phytosanitary (SPS) XML schema (Link 2), as adjusted and further specified for phytosanitary electronic certification on the ePhyto homepage. This pertains to the IPPC ePhyto certificate [1] Electronic certification, information on standard XML schemas and exchange mechanisms (Draft for export (Link 3) and to the IPPC ePhyto certificate for re-export (Link 4). Appendix 1 to ISPM 12:2011) (2006-003) [9] 2. Electronic contents of the XML schema: harmonization by coding [2] Date of this 2012-06-21 document [10] To standardize the XML message and to allow for automatic electronic processing of data, elements of the phytosanitary certificates should be coded as follows. Document Draft Appendix 1 to ISPM 12:2011 category [11] 2.1 Country names Current document Submitted for MC stage [12] The names of countries referred to in the certificate (i.e. the country of origin, of export, of re-export and of Origin CPM-1 (2006) destination and transit) should be coded using the International Organization for Standardization (ISO) two- digit country codes (Link 5). Major stages CPM-1 (2006) added topic (2006-003) [13] 2.2 Scientific names 2006-11 SC approved specification 38 (Revision of ISPM 7 and 12) [14] The names of the certified plants and plant products and the names of regulated pests should be coded 2008-02 EWG discussed draft (revision of ISPM 7 and 12) using the European and Mediterranean Plant Protection Organization (EPPO) codes as available in EPPO Plant Protection Thesaurus (EPPT) (Link 6). -
Genome Sequencing and Comparison of Five Tilletia Species to Identify Candidate Genes for the Detection of Regulated Species Infecting Wheat Hai D
Nguyen et al. IMA Fungus (2019) 10:11 https://doi.org/10.1186/s43008-019-0011-9 IMA Fungus RESEARCH Open Access Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat Hai D. T. Nguyen1*, Tahera Sultana1,2, Prasad Kesanakurti1,3 and Sarah Hambleton1* Abstract Tilletia species cause diseases on grass hosts with some causing bunt diseases on wheat (Triticum). Two of the four species infecting wheat have restricted distributions globally and are subject to quarantine regulations to prevent their spread to new areas. Tilletia indica causes Karnal bunt and is regulated by many countries while the non- regulated T. walkeri is morphologically similar and very closely related phylogenetically, but infects ryegrass (Lolium) and not wheat. Tilletia controversa causesdwarfbuntofwheat(DB)andisalsoregulatedbysome countries, while the closely related but non-regulated species, T. caries and T. laevis, both cause common bunt of wheat (CB). Historically, diagnostic methods have relied on cryptic morphology to differentiate these species in subsamples from grain shipments. Of the DNA-based methods published so far, most have focused on sequence variation among tested strains at a single gene locus. To facilitate the development of additional molecular assays for diagnostics, we generated whole genome data for multiple strains of the two regulated wheat pathogens and their closest relatives. Depending on the species, the genomes were assembled into 907 to 4633 scaffolds ranging from 24 Mb to 30 Mb with 7842 to 9952 gene models predicted. Phylogenomic analyses confirmed the placement of Tilletia in the Exobasidiomycetes andshowedthatT. indica and T.