Bacterial Α-Glucan and Branching Sucrases from GH70 Family: Discovery, Structure–Function Relationship Studies and Engineering
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Trimethylsilyl Trifluoromethanesulfonate-Mediated Additions to Acetals, Nitrones, and Aminals Chelsea Safran
University of Richmond UR Scholarship Repository Honors Theses Student Research 4-1-2013 Trimethylsilyl trifluoromethanesulfonate-mediated additions to acetals, nitrones, and aminals Chelsea Safran Follow this and additional works at: http://scholarship.richmond.edu/honors-theses Recommended Citation Safran, Chelsea, "Trimethylsilyl trifluoromethanesulfonate-mediated additions to acetals, nitrones, and aminals" (2013). Honors Theses. Paper 71. This Thesis is brought to you for free and open access by the Student Research at UR Scholarship Repository. It has been accepted for inclusion in Honors Theses by an authorized administrator of UR Scholarship Repository. For more information, please contact [email protected]. Trimethylsilyl trifluoromethanesulfonate-mediated additions to acetals, nitrones, and aminals By Chelsea Safran Honors Thesis In Program In Biochemistry and Molecular Biology University of Richmond Richmond, VA Spring 2012 Advisor: Dr. C. Wade Downey This thesis has been accepted as part of the honors requirements in the Program in Biochemistry and Molecular Biology ______________________________ _________________ (advisor signature) (date) ______________________________ _________________ (reader signature) (date) Table of Contents i. Acknowledgements ii ii. Abstract iii iii. Chapter I: Introduction 1-4 iv. Chapter II: Amides 4-15 v. Chapter III: I. Bisthione Synthesis 16-18 II. Reactions with other N,O-acetals 18-22 vi. Chapter IV: I. Additions to Nitrones 22-25 II. Future Work 25 vii. Chapter V: Experimental I. N,O-acetal Formation 25-28 II. Addition to Nitrones 28-29 viii. Chapter VI: References 30 i Acknowledgments I would like to acknowledge my research Dr. Wade Downey for all of his time and dedication to my research for the past two years. -
Disaccharidase Deficiencies
J Clin Pathol: first published as 10.1136/jcp.s3-5.1.22 on 1 January 1971. Downloaded from J. clin. Path., 24, Suppl. (Roy. Coll. Path.), 5, 22-28 Disaccharidase deficiencies G. NEALE From the Department ofMedicine, Royal Postgraduate Medical School, Du Cane Road, London Up to 12 years ago the absorption of disaccharides capable of hydrolysing maltose, which may explain was a problem in physiology which attracted little why maltase deficiency is not found as an isolated attention and which appeared to be unrelated to the defect of the enterocyte. Isomaltase and sucrase problems of clinical medicine. Indeed, most text- appear to be distinct but linked entities, and hence books stated incorrectly that the disaccharides were they are absent together in the hereditary condition hydrolysed to monosaccharides in the lumen of the of sucrase-isomaltase deficiency (Dahlquist and small intestine despite the evidence of half a century Telenius, 1969). Lactase activity consists of at least before, which had suggested that they were digested two separate enzymes, one of which is not in the by the mucosal surface (Reid, 1901). The renewal of brush border but within the cell (Zoppi, Hadom, interest in the subject of disaccharide absorption Gitzelmann, Kistler, and Prader, 1966). The signifi- occurred after the description of congenital lactase cance of intracellular lactase activity is uncertain. It deficiency by Holzel, Schwarz, and Sutcliffe (1959) cannot play any part in the normal digestion of and of sucrase-isomaltase deficiency by Weijers, lactose which is a function of the brush border of the van de Kamer, Mossel, and Dicke (1960). -
Flavonoid Glucodiversification with Engineered Sucrose-Active Enzymes Yannick Malbert
Flavonoid glucodiversification with engineered sucrose-active enzymes Yannick Malbert To cite this version: Yannick Malbert. Flavonoid glucodiversification with engineered sucrose-active enzymes. Biotechnol- ogy. INSA de Toulouse, 2014. English. NNT : 2014ISAT0038. tel-01219406 HAL Id: tel-01219406 https://tel.archives-ouvertes.fr/tel-01219406 Submitted on 22 Oct 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Last name: MALBERT First name: Yannick Title: Flavonoid glucodiversification with engineered sucrose-active enzymes Speciality: Ecological, Veterinary, Agronomic Sciences and Bioengineering, Field: Enzymatic and microbial engineering. Year: 2014 Number of pages: 257 Flavonoid glycosides are natural plant secondary metabolites exhibiting many physicochemical and biological properties. Glycosylation usually improves flavonoid solubility but access to flavonoid glycosides is limited by their low production levels in plants. In this thesis work, the focus was placed on the development of new glucodiversification routes of natural flavonoids by taking advantage of protein engineering. Two biochemically and structurally characterized recombinant transglucosylases, the amylosucrase from Neisseria polysaccharea and the α-(1→2) branching sucrase, a truncated form of the dextransucrase from L. Mesenteroides NRRL B-1299, were selected to attempt glucosylation of different flavonoids, synthesize new α-glucoside derivatives with original patterns of glucosylation and hopefully improved their water-solubility. -
Is There Hidden Sugar in Your Drink?
Is There Hidden Sugar in Your Drink? Anjali Shankar 9th Grade Moravian Academy Upper School June 5th, 2020 Motivation - I have a big passion for the medical field, showed by last year’s project. - Food labels and nutrition have caught my eye and are important when eating. How do glucose levels Research in different drinks change after adding Question an invertase enzyme? Given that the invertase enzyme breaks down sucrose, glucose levels will rise after adding the enzyme because the sucrose will convert to Hypothesis glucose and fructose. Coca Cola will have the most glucose because it has the most calories of each drink. Glucose - Chemical compound in the body - C6H12O6 - Comes from food and drink - Generally rich in sugars/carbohydrates - Used for many purposes: - Used to make energy (ATP) in cellular respiration - Stores energy - Used to build carbohydrates Chemical Reaction - A chemical reaction transfers a set of compounds into another - Reactants: Enter into a chemical reaction - Products: Compounds produced by the reaction - Catalyst: Speeds up the rate of a chemical reaction - Enzyme: Biological catalysts; usually proteins The formula for this experiment is: Invertase Sucrose + Water Glucose + Fructose Invertase C12H22O11 + H20 C6H12O6 + C6H12O6 In the Body - The most common sugar is eaten as sucrose. - Also known as table sugar - It is broken down in the body into glucose and fructose through a chemical reaction during digestion. - Fructose: Contains the same elements as glucose, but has a different chemical construction - Often used to make more glucose - The reaction is catalyzed by an enzyme named sucrase. - Modeled by invertase in experiment - The pancreas monitors blood sugar, or amount of glucose in the body. -
Structure-Function Relationships of Glucansucrase and Fructansucrase Enzymes from Lactic Acid Bacteria Sacha A
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, Mar. 2006, p. 157–176 Vol. 70, No. 1 1092-2172/06/$08.00ϩ0 doi:10.1128/MMBR.70.1.157–176.2006 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Structure-Function Relationships of Glucansucrase and Fructansucrase Enzymes from Lactic Acid Bacteria Sacha A. F. T. van Hijum,1,2†* Slavko Kralj,1,2† Lukasz K. Ozimek,1,2 Lubbert Dijkhuizen,1,2 and Ineke G. H. van Geel-Schutten1,3 Centre for Carbohydrate Bioprocessing, TNO-University of Groningen,1 and Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen,2 9750 AA Haren, The Netherlands, and Innovative Ingredients and Products Department, TNO Quality of Life, Utrechtseweg 48 3704 HE Zeist, The Netherlands3 INTRODUCTION .......................................................................................................................................................157 NOMENCLATURE AND CLASSIFICATION OF SUCRASE ENZYMES ........................................................158 GLUCANSUCRASES .................................................................................................................................................158 Reactions Catalyzed and Glucan Product Synthesis .........................................................................................161 Glucan synthesis .................................................................................................................................................161 Acceptor reaction ................................................................................................................................................161 -
Ep 2 246 408 A2
(19) & (11) EP 2 246 408 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 03.11.2010 Bulletin 2010/44 C09K 8/60 (2006.01) (21) Application number: 10158819.2 (22) Date of filing: 13.11.2000 (84) Designated Contracting States: • Norman, Monica AT BE CH CY DE DK ES FI FR GB GR IE IT LI LU Houston, TX 77041 (US) MC NL PT • Symes, Kenneth C. Designated Extension States: Bradford, RO Yorkshire BD14 6LR (GB) • Mistry, Kishor K. (30) Priority: 12.11.1999 US 165393 P Keighley, East Moton, BD20 5UU (GB) (62) Document number(s) of the earlier application(s) in • Ballard, David A. accordance with Art. 76 EPC: Stonehaven, 00980356.0 / 1 232 329 Aberdeenshire AB39 3PQ (GB) (27) Previously filed application: (74) Representative: Hull, John Philip 13.11.2000 PCT/US03/01106 Beck Greener Fulwood House (71) Applicant: M-I L.L.C. 12 Fulwood Place Houston, TX 77072 (US) London WC1V 6HR (GB) (72) Inventors: Remarks: • Freeman, Michael A. This application was filed on 31-03-2010 as a Kingwood, TX 77345 (US) divisional application to the application mentioned • Jiang, Ping under INID code 62. 3400 Sandnes (NO) (54) Method and composition f or the triggered release of polymer-degrading agents for oil field use (57) Disclosed are methods and related composi- tions for altering the physical and chemical properties of a substrate used in hydrocarbon exploitation, such as in downhole drilling operations. In a preferred embodiment a method involves formulating a fluid, tailored to the spe- cific drilling conditions, that contains one or more inacti- vated enzymes. -
Congenital Sucrase-Isomaltase Deficiency
Congenital sucrase-isomaltase deficiency Description Congenital sucrase-isomaltase deficiency is a disorder that affects a person's ability to digest certain sugars. People with this condition cannot break down the sugars sucrose and maltose. Sucrose (a sugar found in fruits, and also known as table sugar) and maltose (the sugar found in grains) are called disaccharides because they are made of two simple sugars. Disaccharides are broken down into simple sugars during digestion. Sucrose is broken down into glucose and another simple sugar called fructose, and maltose is broken down into two glucose molecules. People with congenital sucrase- isomaltase deficiency cannot break down the sugars sucrose and maltose, and other compounds made from these sugar molecules (carbohydrates). Congenital sucrase-isomaltase deficiency usually becomes apparent after an infant is weaned and starts to consume fruits, juices, and grains. After ingestion of sucrose or maltose, an affected child will typically experience stomach cramps, bloating, excess gas production, and diarrhea. These digestive problems can lead to failure to gain weight and grow at the expected rate (failure to thrive) and malnutrition. Most affected children are better able to tolerate sucrose and maltose as they get older. Frequency The prevalence of congenital sucrase-isomaltase deficiency is estimated to be 1 in 5, 000 people of European descent. This condition is much more prevalent in the native populations of Greenland, Alaska, and Canada, where as many as 1 in 20 people may be affected. Causes Mutations in the SI gene cause congenital sucrase-isomaltase deficiency. The SI gene provides instructions for producing the enzyme sucrase-isomaltase. -
Characterization of Substrate Binding and Catalytic Mechanisms of An
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1988 Characterization of substrate binding and catalytic mechanisms of an endoxylanase, amylosucrase, and porcine pancreatic alpha-amylase Bernard Yi Tao Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Biochemistry Commons, and the Chemical Engineering Commons Recommended Citation Tao, Bernard Yi, "Characterization of substrate binding and catalytic mechanisms of an endoxylanase, amylosucrase, and porcine pancreatic alpha-amylase " (1988). Retrospective Theses and Dissertations. 8807. https://lib.dr.iastate.edu/rtd/8807 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS The most advanced technology has been used to photo graph and reproduce this manuscript from the microfilm master, UMI films the original text directly fi'om the copy submitted. Thus, some dissertation copies are in typewriter face, while others may be from a computer printer. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyrighted material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are re produced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps. -
Production of Carbohydrases for Developing Soy Meal As
PRODUCTION OF CARBOHYDRASES FOR DEVELOPING SOY MEAL AS PROTEIN SOURCE FOR ANIMAL FEED A Dissertation Presented to The Graduate Faculty of The University of Akron In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy Qian Li May, 2017 PRODUCTION OF CARBOHYDRASES FOR DEVELOPING SOY MEAL AS PROTEIN SOURCE FOR ANIMAL FEED Qian Li Dissertation Approved: Accepted: Advisor Department Chair Dr. Lu-Kwang Ju Dr. Michael H. Cheung Committee Member Dean of the College Dr. Jie Zheng Dr. Donald P. Visco Jr. Committee Member Dean of the Graduate School Dr. Lingyun Liu Dr. Chand Midha Committee Member Date Dr. Ge Zhang Committee Member Dr. Pei-Yang Liu ii ABSTRACT Global demand for seafood is growing rapidly and more than 40% of the demand is met by aquaculture. Conventional aquaculture diet used fishmeal as the protein source. The limited production of fishmeal cannot meet the increase of aquaculture production. Therefore, it is desirable to partially or totally replace fishmeal with less-expensive protein sources, such as poultry by-product meal, feather meal blood meal, or meat and bone meal. However, these feeds are deficient in one or more of the essential amino acids, especially lysine, isoleucine and methionine. And, animal protein sources are increasingly less acceptable due to health concerns. One option is to utilize a sustainable, economic and safe plant protein sources, such as soybean. The soybean industry has been very prominent in many countries in the last 20 years. The worldwide soybean production has increased 106% since 1996 to 2010[1]. Soybean protein is becoming the best choice of sustainable, economic and safe protein sources. -
Glucans with Potential Health Benefits Through Controlled Glucose Release in the Human
University of Groningen Synthesis of novel α-glucans with potential health benefits through controlled glucose release in the human gastrointestinal tract Gangoiti, Joana; Corwin, Sarah F; Lamothe, Lisa M; Vafiadi, Christina; Hamaker, Bruce R; Dijkhuizen, Lubbert Published in: Critical Reviews in Food Science and Nutrition DOI: 10.1080/10408398.2018.1516621 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2020 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Gangoiti, J., Corwin, S. F., Lamothe, L. M., Vafiadi, C., Hamaker, B. R., & Dijkhuizen, L. (2020). Synthesis of novel α-glucans with potential health benefits through controlled glucose release in the human gastrointestinal tract. Critical Reviews in Food Science and Nutrition, 60(1), 123-146. https://doi.org/10.1080/10408398.2018.1516621 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. -
Furanosyl Oxocarbenium Ion Conformational Energy Landscape
DOI: 10.1002/chem.201900651 Full Paper & Stereoselectivity |Hot Paper| Furanosyl Oxocarbenium Ion Conformational Energy Landscape Maps as a Tool to Study the Glycosylation Stereoselectivity of 2-Azidofuranoses, 2-Fluorofuranoses and Methyl Furanosyl Uronates Stefan van der Vorm, Thomas Hansen, Erwin R. van Rijssel, Rolf Dekkers, Jerre M. Madern, Herman S. Overkleeft, Dmitri V. Filippov, Gijsbert A. van der Marel, and Jeroen D. C. Code*[a] Abstract: The 3D shape of glycosyl oxocarbenium ions de- ic furanoses by using a combined computational and experi- termines their stability and reactivity and the stereochemical mental approach. Surprisingly, all furanosyl donors studied course of SN1 reactions taking place on these reactive inter- react in a highly stereoselective manner to provide the 1,2- mediates is dictated by the conformation of these species. cis products, except for the reactions in the xylose series. The nature and configuration of functional groups on the The 1,2-cis selectivity for the ribo-, arabino- and lyxo-config- carbohydrate ring affect the stability of glycosyl oxocarbeni- ured furanosides can be traced back to the lowest-energy 3E um ions and control the overall shape of the cations. We or E3 conformers of the intermediate oxocarbenium ions. herein map the stereoelectronic substituent effects of the The lack of selectivity for the xylosyl donors is related to the C2-azide, C2-fluoride and C4-carboxylic acid ester on the sta- occurrence of oxocarbenium ions adopting other conforma- bility and reactivity of the complete suite of diastereoisomer- tions. Introduction and they may in fact outweigh steric effects. For example, pro- tonated iminosugars, that is, carbohydrates having the endocy- Stereoelectonic effects dictate the shape and behaviour of clic oxygen replaced by a nitrogen, may change their confor- molecules. -
Dynafit—A Software Package for Enzymology
Author's personal copy CHAPTER TEN DynaFit—A Software Package for Enzymology Petr Kuzmicˇ Contents 1. Introduction 248 2. Equilibrium Binding Studies 250 2.1. Experiments involving intensive physical quantities 250 2.2. Independent binding sites and statistical factors 252 3. Initial Rates of Enzyme Reactions 255 3.1. Thermodynamic cycles in initial rate models 255 4. Time Course of Enzyme Reactions 260 4.1. Invariant concentrations of reactants 261 5. General Methods and Algorithms 262 5.1. Initial estimates of model parameters 263 5.2. Uncertainty of model parameters 269 5.3. Model-discrimination analysis 273 6. Concluding Remarks 275 6.1. Model discrimination analysis 275 6.2. Optimal design of experiments 276 Acknowledgments 276 References 276 Abstract Since its original publication, the DynaFit software package [Kuzmicˇ,P.(1996). Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase. Anal. Biochem. 237, 260–273] has been used in more than 500 published studies. Most applications have been in biochemistry, especially in enzyme kinetics. This paper describes a number of recently added features and capabilities, in the hope that the tool will continue to be useful to the enzymo- logical community. Fully functional DynaFit continues to be freely available to all academic researchers from http://www.biokin.com. BioKin Ltd., Watertown, Massachusetts, USA Methods in Enzymology, Volume 467 # 2009 Elsevier Inc. ISSN 0076-6879, DOI: 10.1016/S0076-6879(09)67010-5 All rights reserved. 247 Author's personal copy