(Coleoptera, Carabidae, Pterostichus Bonelli) from California
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Naming the Extrasolar Planets
Naming the extrasolar planets W. Lyra Max Planck Institute for Astronomy, K¨onigstuhl 17, 69177, Heidelberg, Germany [email protected] Abstract and OGLE-TR-182 b, which does not help educators convey the message that these planets are quite similar to Jupiter. Extrasolar planets are not named and are referred to only In stark contrast, the sentence“planet Apollo is a gas giant by their assigned scientific designation. The reason given like Jupiter” is heavily - yet invisibly - coated with Coper- by the IAU to not name the planets is that it is consid- nicanism. ered impractical as planets are expected to be common. I One reason given by the IAU for not considering naming advance some reasons as to why this logic is flawed, and sug- the extrasolar planets is that it is a task deemed impractical. gest names for the 403 extrasolar planet candidates known One source is quoted as having said “if planets are found to as of Oct 2009. The names follow a scheme of association occur very frequently in the Universe, a system of individual with the constellation that the host star pertains to, and names for planets might well rapidly be found equally im- therefore are mostly drawn from Roman-Greek mythology. practicable as it is for stars, as planet discoveries progress.” Other mythologies may also be used given that a suitable 1. This leads to a second argument. It is indeed impractical association is established. to name all stars. But some stars are named nonetheless. In fact, all other classes of astronomical bodies are named. -
Receptor-Like Kinases from Arabidopsis Form a Monophyletic Gene Family Related to Animal Receptor Kinases
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases Shin-Han Shiu and Anthony B. Bleecker* Department of Botany and Laboratory of Genetics, University of Wisconsin, Madison, WI 53706 Edited by Elliot M. Meyerowitz, California Institute of Technology, Pasadena, CA, and approved July 6, 2001 (received for review March 22, 2001) Plant receptor-like kinases (RLKs) are proteins with a predicted tionary relationship between the RTKs and RLKs within the signal sequence, single transmembrane region, and cytoplasmic recognized superfamily of related eukaryotic serine͞threonine͞ kinase domain. Receptor-like kinases belong to a large gene family tyrosine protein kinases (ePKs). An earlier phylogenetic analysis with at least 610 members that represent nearly 2.5% of Arabi- (22), using the six RLK sequences available at the time, indicated dopsis protein coding genes. We have categorized members of this a close relationship between plant sequences and animal RTKs, family into subfamilies based on both the identity of the extracel- although RLKs were placed in the ‘‘other kinase’’ category. A more lular domains and the phylogenetic relationships between the recent analysis using only plant sequences led to the conclusion that kinase domains of subfamily members. Surprisingly, this structur- the 18 RLKs sampled seemed to form a separate family among the ally defined group of genes is monophyletic with respect to kinase various eukaryotic kinases (23). The recent completion of the domains when compared with the other eukaryotic kinase families. Arabidopsis genome sequence (5) provides an opportunity for a In an extended analysis, animal receptor kinases, Raf kinases, plant more comprehensive analysis of the relationships between these RLKs, and animal receptor tyrosine kinases form a well supported classes of receptor kinases. -
Classification of Plants
Classification of Plants Plants are classified in several different ways, and the further away from the garden we get, the more the name indicates a plant's relationship to other plants, and tells us about its place in the plant world rather than in the garden. Usually, only the Family, Genus and species are of concern to the gardener, but we sometimes include subspecies, variety or cultivar to identify a particular plant. Starting from the top, the highest category, plants have traditionally been classified as follows. Each group has the characteristics of the level above it, but has some distinguishing features. The further down the scale you go, the more minor the differences become, until you end up with a classification which applies to only one plant. Written convention indicated with underlined text KINGDOM Plant or animal DIVISION (PHYLLUM) CLASS Angiospermae (Angiosperms) Plants which produce flowers Gymnospermae (Gymnosperms) Plants which don't produce flowers SUBCLASS Dicotyledonae (Dicotyledons, Dicots) Plants with two seed leaves Monocotyledonae (Monocotyledons, Monocots) ‐ Plants with one seed leaf SUPERORDER A group of related Plant Families, classified in the order in which they are thought to have developed their differences from a common ancestor. There are six Superorders in the Dicotyledonae (Magnoliidae, Hamamelidae, Caryophyllidae, Dilleniidae, Rosidae, Asteridae), and four Superorders in the Monocotyledonae (Alismatidae, Commelinidae, Arecidae, Liliidae). The names of the Superorders end in ‐idae ORDER ‐ Each Superorder is further divided into several Orders. The names of the Orders end in ‐ales FAMILY ‐ Each Order is divided into Families. These are plants with many botanical features in common, and is the highest classification normally used. -
Taxonomy and Classification
Taxonomy and Classification Taxonomy = the science of naming and describing species “Wisdom begins with calling things by their right names” -Chinese Proverb museums contain ~ 2 Billion specimens worldwide about 1.5 M different species of life have been described each year ~ 13,000 new species are described most scientists estimate that there are at least 50 to 100 Million actual species sharing our planet today most will probably remain unknown forever: the most diverse areas of world are the most remote most of the large stuff has been found and described not enough researchers or money to devote to this work Common vs Scientific Name many larger organisms have “common names” but sometimes >1 common name for same organism sometimes same common name used for 2 or more distinctly different organisms eg. daisy eg. moss eg. mouse eg. fern eg. bug Taxonomy and Classification, Ziser Lecture Notes, 2004 1 without a specific (unique) name it’s impossible to communicate about specific organisms What Characteristics are used how do we begin to categorize, classify and name all these organisms there are many ways to classify: form color size chemical structure genetic makeup earliest attempts used general appearance ie anatomy and physiological similarities plants vs animals only largest animals were categorized everything else was “vermes” but algae, protozoa today, much more focus on molecular similarities proteins, DNA, genes History of Classification Aristotle was the first to try to name and classify things based on structural similarities -
Structural Profile of the Pea Or Bean Family
Florida ECS Quick Tips July 2016 Structural Profile of the Pea or Bean Family The Pea Family (Fabaceae) is the third largest family of flowering plants, with approximately 750 genera and over 19,000 known species. (FYI – the Orchid Family is the largest plant family and the Aster Family ranks second in number of species.) I am sure that you are all familiar with the classic pea flower (left). It, much like the human body, is bilaterally symmetrical and can be split from top to bottom into two mirror-image halves. Botanists use the term zygomorphic when referring to a flower shaped like this that has two different sides. Zygomorphic flowers are different than those of a lily, which are radially symmetrical and can be split into more than two identical sections. (These are called actinomorphic flowers.) Pea flowers are made up of five petals that are of different sizes and shapes (and occasionally different colors as well). The diagram at right shows a peanut (Arachis hypogaea) flower (another member of the Pea Family), that identifies the various flower parts. The large, lobed petal at the top is called the banner or standard. Below the banner are a pair of petals called the wings. And, between the wings, two petals are fused together to form the keel, which covers the male and female parts of the flower. Because of the resemblance to a butterfly, pea flowers are called papilionaceous (from Latin: papilion, a butterfly). However, there is group of species in the Pea Family (a subfamily) with flowers like the pride-of-Barbados or peacock flower (Caesalpinia pulcherrima) shown to the left. -
Plant Nomenclature and Taxonomy an Horticultural and Agronomic Perspective
3913 P-01 7/22/02 4:25 PM Page 1 1 Plant Nomenclature and Taxonomy An Horticultural and Agronomic Perspective David M. Spooner* Ronald G. van den Berg U.S. Department of Agriculture Biosystematics Group Agricultural Research Service Department of Plant Sciences Vegetable Crops Research Unit Wageningen University Department of Horticulture PO Box 8010 University of Wisconsin 6700 ED Wageningen 1575 Linden Drive The Netherlands Madison Wisconsin 53706-1590 Willem A. Brandenburg Plant Research International Wilbert L. A. Hetterscheid PO Box 16 VKC/NDS 6700 AA, Wageningen Linnaeuslaan 2a The Netherlands 1431 JV Aalsmeer The Netherlands I. INTRODUCTION A. Taxonomy and Systematics B. Wild and Cultivated Plants II. SPECIES CONCEPTS IN WILD PLANTS A. Morphological Species Concepts B. Interbreeding Species Concepts C. Ecological Species Concepts D. Cladistic Species Concepts E. Eclectic Species Concepts F. Nominalistic Species Concepts *The authors thank Paul Berry, Philip Cantino, Vicki Funk, Charles Heiser, Jules Janick, Thomas Lammers, and Jeffrey Strachan for review of parts or all of our paper. Horticultural Reviews, Volume 28, Edited by Jules Janick ISBN 0-471-21542-2 © 2003 John Wiley & Sons, Inc. 1 3913 P-01 7/22/02 4:25 PM Page 2 2 D. SPOONER, W. HETTERSCHEID, R. VAN DEN BERG, AND W. BRANDENBURG III. CLASSIFICATION PHILOSOPHIES IN WILD AND CULTIVATED PLANTS A. Wild Plants B. Cultivated Plants IV. BRIEF HISTORY OF NOMENCLATURE AND CODES V. FUNDAMENTAL DIFFERENCES IN THE CLASSIFICATION AND NOMENCLATURE OF CULTIVATED AND WILD PLANTS A. Ambiguity of the Term Variety B. Culton Versus Taxon C. Open Versus Closed Classifications VI. A COMPARISON OF THE ICBN AND ICNCP A. -
Characterization of the Sandfly Fever Naples Species Complex and Description of a New Karimabad Species Complex
Journal of General Virology (2014), 95, 292–300 DOI 10.1099/vir.0.056614-0 Short Characterization of the Sandfly fever Naples Communication species complex and description of a new Karimabad species complex (genus Phlebovirus, family Bunyaviridae) Gustavo Palacios,1 Robert B. Tesh,2 Nazir Savji,33 Amelia P. A. Travassos da Rosa,2 Hilda Guzman,2 Ana Valeria Bussetti,3 Aaloki Desai,3 Jason Ladner,1 Maripaz Sanchez-Seco4 and W. Ian Lipkin3 Correspondence 1Center for Genomic Sciences, United States Army Medical Research Institute for Infectious Gustavo Palacios Diseases, Frederick, MD, USA [email protected] 2Center for Biodefense and Emerging Infectious Diseases, Department of Pathology, University of Texas Medical Branch, Galveston, TX, USA 3Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA 4Centro Nacional de Microbiologia, Instituto de Salud ‘Carlos III’, Madrid, Spain Genomic and antigenic characterization of members of the Sandfly fever Naples virus (SFNV) complex reveals the presence of five clades that differ in their geographical distribution. Saint Floris and Gordil viruses, both found in Africa, form one clade; Punique, Granada and Massilia viruses, all isolated in the western Mediterranean, constitute a second; Toscana virus, a third; SFNV isolates from Italy, Cyprus, Egypt and India form a fourth; while Tehran virus and a Serbian isolate Yu 8/76, represent a fifth. Interestingly, this last clade appears not to express the second non-structural protein ORF. Karimabad virus, previously classified as a member of the SFNV complex, and Gabek Forest virus are distinct and form a new species complex (named Karimabad) in the Phlebovirus genus. -
Writing Plant Names
Writing Plant Names 06-09-2020 Nomenclatural Codes and Resources There are two international codes that govern the use and application of plant nomenclature: 1. The International Code of Nomenclature for Algae, Fungi, and Plants, Shenzhen Code, 2018. International Association for Plant Taxonomy. Abbreviation: ICN • Serves the needs of science by setting precise rules for the application of scientific names to taxonomic groups of algae, fungi, and plants • Available online at https://www.iapt-taxon.org/nomen/main.php 2. The International Code of Nomenclature for Cultivated Plants, 9th Edition, 2016. International Association for Horticultural Science. Abbreviation: ICNCP • Serves the applied disciplines of horticulture, agriculture, and forestry by setting rules for the naming of cultivated plants • Available online at https://www.ishs.org/sites/default/files/static/ScriptaHorticulturae_18.pdf These two resources, while authoritative, are very technical and are not easy to read. Two more accessible references are: 1. Plant Names: A guide to botanical nomenclature, 3rd Edition, 2007. Spencer, R., R. Cross, P. Lumley. CABI Publishing. • Hard copy available for reference in the Overlook Pavilion office 2. The Code Decoded, 2nd Edition, 2019. Turland, N. Advanced Books. • Available online at https://ab.pensoft.net/book/38075/list/9/ This document summarizes the rules presented in the above references and, where presentation is a matter of preference rather than hard-and-fast rules (such as with presentation of common names), establishes preferred presentation for the Arboretum at Penn State. Page | 1 Parts of a Name The diagram below illustrates the overall structure of a plant name. Each component, its variations, and its preferred presentation will be addressed in the sections that follow. -
Greek Mythology / Apollodorus; Translated by Robin Hard
Great Clarendon Street, Oxford 0X2 6DP Oxford University Press is a department of the University of Oxford. It furthers the University’s objective of excellence in research, scholarship, and education by publishing worldwide in Oxford New York Athens Auckland Bangkok Bogotá Buenos Aires Calcutta Cape Town Chennai Dar es Salaam Delhi Florence Hong Kong Istanbul Karachi Kuala Lumpur Madrid Melbourne Mexico City Mumbai Nairobi Paris São Paulo Shanghai Singapore Taipei Tokyo Toronto Warsaw with associated companies in Berlin Ibadan Oxford is a registered trade mark of Oxford University Press in the UK and in certain other countries Published in the United States by Oxford University Press Inc., New York © Robin Hard 1997 The moral rights of the author have been asserted Database right Oxford University Press (maker) First published as a World’s Classics paperback 1997 Reissued as an Oxford World’s Classics paperback 1998 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, without the prior permission in writing of Oxford University Press, or as expressly permitted by law, or under terms agreed with the appropriate reprographics rights organizations. Enquiries concerning reproduction outside the scope of the above should be sent to the Rights Department, Oxford University Press, at the address above You must not circulate this book in any other binding or cover and you must impose this same condition on any acquirer British Library Cataloguing in Publication Data Data available Library of Congress Cataloging in Publication Data Apollodorus. [Bibliotheca. English] The library of Greek mythology / Apollodorus; translated by Robin Hard. -
Are the Subgenera of Sebastes Monophyletic? Z
Biology, Assessment, and Management of North Pacific Rockfishes 185 Alaska Sea Grant College Program • AK-SG-07-01, 2007 Are the Subgenera of Sebastes Monophyletic? Z. Li and A.K. Gray1 University of Alaska Fairbanks, School of Fisheries and Ocean Sciences, Fisheries Division, Juneau, Alaska M.S. Love University of California, Marine Science Institute, Santa Barbara, California A. Goto Hokkaido University, Graduate School of Fisheries Sciences, Hokkaido, Japan A.J. Gharrett University of Alaska Fairbanks, School of Fisheries and Ocean Sciences, Fisheries Division, Juneau, Alaska Abstract We examined genetic relationships among Sebastes rockfishes to evalu- ate the subgeneric relationships within Sebastes. We analyzed restric- tion site variation (12S and 16S rRNA and NADH dehydrogenase-3 and -4 genes) by using parsimony and distance analyses. Seventy-one Sebastes species representing 16 subgenera were included. Thirteen subgenera were represented by more than one species, and three subgenera were monotypic. We also evaluated three currently unassigned species. The only monophyletic subgenus was Sebastomus, although some consistent groups were formed by species from different subgenera. The north- eastern Pacific species of Pteropodus clustered with one northeastern Pacific species of the subgenus Mebarus (S. atrovirens) and two north- eastern Pacific species of the subgenusAuctospina (S. auriculatus and S. dalli) forming a monophyletic group distinct from northwestern Pacific 1Present address: National Marine Fisheries Service, Auke Bay Laboratory, 11305 Glacier Highway, Juneau, Alaska 99801 186 Li et al.—Are the Subgenera of Sebastes Monophyletic? Pteropodus species. The subgenera Acutomentum and Allosebastes were polyphyletic, although subsets of each were monophyletic. Sebastes polyspinis and S. reedi, which have not yet been assigned to subgen- era, are closely related to two other northern species, S. -
Pinus Ponderosa: Research Paper PSW-RP-264 a Taxonomic Review September 2013 with Five Subspecies in the United States Robert Z
D E E P R A U R T LT MENT OF AGRICU United States Department of Agriculture Forest Service Pacific Southwest Research Station Pinus ponderosa: Research Paper PSW-RP-264 A Taxonomic Review September 2013 With Five Subspecies in the United States Robert Z. Callaham The U.S. Department of Agriculture (USDA) prohibits discrimination against its customers, employees, and applicants for employment on the bases of race, color, national origin, age, disability, sex, gender identity, religion, reprisal, and where applicable, political beliefs, marital status, familial or parental status, sexual orientation, or all or part of an individual’s income is derived from any public assistance program, or protected genetic information in employment or in any program or activity conducted or funded by the Department. (Not all prohibited bases will apply to all programs and/or employment activities.) If you wish to file an employment complaint, you must contact your agency’s EEO Counselor (PDF) within 45 days of the date of the alleged discriminatory act, event, or in the case of a personnel action. Additional information can be found online at http:// www.ascr.usda.gov/complaint_filing_file.html. If you wish to file a Civil Rights program complaint of discrimination, complete the USDA Program Discrimination Complaint Form (PDF), found online at http://www.ascr.usda. gov/complaint_filing_cust.html, or at any USDA office, or call (866) 632-9992 to request the form. You may also write a letter containing all of the information requested in the form. Send your completed complaint form or letter to us by mail at U.S. -
Package 'Taxonstand'
Package ‘Taxonstand’ February 15, 2013 Type Package Title Taxonomic standardization of plant species names Version 1.0 Date 2012-03-21 Author Luis Cayuela Maintainer Luis Cayuela <[email protected]> Description Automated standardization of taxonomic names and removal of orthograhpic errors in plant species names using the The Plant List (TPL) website (www.theplantlist.org) License GPL (>= 2) LazyLoad yes Repository CRAN Date/Publication 2012-05-21 08:36:09 NeedsCompilation no R topics documented: bryophytes . .2 TPL.............................................2 TPLck . .5 Index 8 1 2 TPL bryophytes List of bryophytes Description bryophytes contain species names for 100 Mediterranean bryophytes Usage data(bryophytes) Format A data frame with 100 observations on the following 5 variables. Full.name a character vector Genus a character vector Species a character vector Var a character vector Intraspecific a character vector Examples data(bryophytes) str(bryophytes) TPL Connection to The Plant List (TPL) website to check for the validity of a list of plant names Description Connects to TPL and validates the name of a vector of plant species names, replacing synonyms to accepted names and removing orthographical errors in plant names Usage TPL(splist, genus = NULL, species = NULL, infrasp = NULL, infra = TRUE, abbrev = TRUE, corr = FALSE, diffchar = 2, max.distance = 1, file = "") TPL 3 Arguments splist A vector of plant names, each element including the genus and specific epithet and, additionally, the infraspecific epithet. genus A vector containing the genera for plant species names. species A vector containing the specific epithets for plant species names. infrasp A vector containing the infraspecific epithets for plant species names (i.e.