Purification and Properties of Lactate Racemase from Lactobacillus Sake

Total Page:16

File Type:pdf, Size:1020Kb

Purification and Properties of Lactate Racemase from Lactobacillus Sake The Journal of Biochemistry, Vol . 64, No. I, 1968 Purification and Properties of Lactate Racemase from Lactobacillus sake By TETSUG HIYAMA, SAKUzo FUKUI and KAKUO KITAHARA* (From the Institute of Applied Microbiology,University of Tokyo, Bunkyo-ku, Tokyo) (Received for publication, February 12, 1968) A lactate racemase [EC 5.1.2.1] was isolated and purified about 190 fold in specific activity from the sonic extract of Lactobacillus sake. The purified preparation was almost homogeneous by ultracentrifugal and electrophoretical analyses. Characteristic properties of the enzyme were as follows : (a) absorption spectrum showed a single peak at 274 my, (b) molecular weight was 25,000, (c) the enzyme did not require any additional cofactors and showed no activity of lactate dehydrogenase, (d) K, values were 1.7 •~ 10-2 M and 8.0 •~ 10-2 M for D and L-lactate, respectively, (e) optimal pH was 5.8-6.2, (f) an equilibrium point was at a molar ratio of 1/1 (L-isomer/D-isomer), (g) the enzyme activity was inhibited by atebrin, adenosine monosulfate, oxamate and some of Fe chelating agents, (h) pyruvate and acrylate were not incorporated into lactate during the reaction, and (i) exchange reaction of hydrogen between lactate and water did not occur during the reaction. Since the first observation on the enzy the addition of both NAD and pyridoxamine matic racemization of optical active lactate phosphate. In this paper we deal with the by lactic acid bacteria had been reported by purification and properties of the lactate KATAGIRI and KITAHARA in 1936 (1), racemases racemizing enzyme from the cells of L. sake. for various substances were successively disco vered in various organisms (2-8), and their MATERIALS AND METHODS physiological significance and reaction me Organism and Cultivation-Lacobacillus sake 012 chanism were discussed. which was isolated from sake starter in our laboratory On the biochemical racemization of lac was used. The bacterium was cultured at 30•Ž under tate, following two systems were presented : static condition in a medium containing 2 g of yeast one is lactate racemase [EC 5.1.2.1] in extract (Daigo Eiyo-Kagaku Co. Ltd., Osaka), lO g Clostridium (9, 10) and another is the coupl of Ehlrich's meat extract, 10 g of polypeptone (Daigo) ing system of NAD linked D and L-lactate and 15 g of glucose per liter. The medium was dehydrogenases [EC 1. 1.1.28 and 1. 1.1.27] in adjusted to pH 7.0 with KOH and sterilized at 120•Ž Lactobacillus (11). The former requires pyrido for 10 min. First seed culture was performed in 10 ml xamine-phosphate and ferrous ion as cofactors of the medium by 20 hr cultivation. To prepare and does not include any activity of lactate second seed culture, whole volume of the first seed dehydrogenase. culture was inoculated into 2 liters of the medium, and cultivation was carried out for 20 hr. Three Recently, we found that the racemase hundred milliters of the second seed culture was ino activity in Lactobacillus sake is not affected by culated into each of six Erlenmeyer flasks contain * Present address: Tokyo University of Agricul ing 10 liters of the medium per flask. The culture, ture, Tokyo. total volume of 60 liters, was incubated for 20 hr. 99 100 T . HIYAMA, S. FUKUI and K. KITAHARA After the cultivation , the cells were harvested by hydrolyzed before use. Adenosine monosulfate (Na centrifugation and washed twice with 0 .5% NaCl and salt) was kindly supplied by Dr. M. Ishimoto, Universi finally with distilled water . The cells thus obtained ty of Hokkaido. were stored at -20•Ž . During the storage for a Other chemicals were commercial products. month any loss in the enzyme activity was not observed. From 60 liters culture , 12g of dry cells RESULTS were obtained . Purification of Lactate Racemase-All opera Assay of Lactate Racemase-Assay system for lactate racemase contained 10 ƒÊmoles of sodium D-lactate or tions were carried out at 4•Ž. Frozen cells, L-lactate, 20 ƒÊmoles of phosphate buffer 12 g dry weight, were suspended in deionized , pH 7.0, and racemase solution in a total volume of 0 .2 ml. The water to give a final volume of 200 ml. The reaction was carried out for 30 min at 30•Ž suspension was treated with sonic oscillation , then the mixture in a test tube was kept in boiling water for (10 kc, 100W) for 20 min to disrupt the cells. 30 sec to stop the reaction. An amount of optical Cell debris and intact cells were removed antipode formed from D or L-lactate was determined from the sonicated sample by centrifugation by the enzymatic methods of HIYAMA et al. (12) or at 25,000xg for 20 min. The supernatant was of HARN and BRUNS (13). The former is specific for incubated at 48•Ž for 3 min to precipitate D-lactate and the latter for L -lactate. One unit of heat-coagulable impurities. After removal of the enzyme is defined as an amount which con verts one ƒÊmole of L-lactate to D-isomer per hour precipitate by centrifugation, the supernatant was diluted with deionized water to 250 ml. under the conditions shown above. Specific activity To the diluted solution was added 62 g of is presented as an enzyme units per absorbance at 280mƒÊ. ammonium sulfate, and then the solution Determinaton of Metals-Metals in a racemase pre was allowed to stand for 2 hr. The precipitate paration were analyzed by atomic absorption spectrum formed was removed by centrifugation. To technique using a Hitachi-Perkin Elmer atomic absorp the clear supernatant obtained, further addi tion spectrophotometer. tion of 72 g of ammonium sulfate was per Separation of Lactic and Pyruvic Acids-Separation formed. The precipitate formed within 4 hr of lactic and pyruvic acids was carried out as follows : was collected by centrifugation at 10,000 •~ g a reaction mixture charged on a Dowex I •~ 8 (for for 10 min, and dissolved in deionized water mate type) column (I •~ 1 cm) was eluted successively of 21 ml. The solution was dialyzed overnight with 10 ml of 0.2 N and of 3.0 •~ formic acid. Lactic against one liter of deionized water, The and pyruvic acids were quantitatively recovered in dialyzate was kept at 50•Ž for 3 min. The the former and the latter eluates, respectively. By this procedure acrylic acid was not eluted from the precipitate formed by the treatment was re column. moved by ultracentrifugation at 105,000•~g Chemicals-D and L-lactic acids were prepared for 60 min. The supernatant was charged on from culture broths of Sporolactobacillusinulinus and a DEAE-cellulose column (3.5•~65 cm) equili Lactobacilluscasei, respectively. Lactic acid was ex brated with Mcllvaine buffer of 80 times tracted from the broth with ethyl ether. After dilution and pH 5.0. Elution was performed removal of ethyl ether from the extract , the acid with the same buffer containing 0.13m KCl was diluted with small amount of water and decolored at an elution rate of 7.0 ml per minute. The by passing through an activated carbon bed. The enzyme was recovered in tubes of number lactic acid was turned into zinc lactate by treatment 9-13 (each tube 200 ml). The enzyme solu with zinc carbonate. Zinc lactate was recrystallized twice from water. Purified free acid was prepared tion (1000 ml) was concentrated by dialysis against flakes of polyethylenglycol (Tpye 6000 from the lactate by passing through a cation ex , D changer resin column. Lactic acid obtained was ainippon Seiyaku Co. Ltd., Osaka) for 10 hr. neutralized with NaOH and then used as substrate The concentrated sample (10 ml) was diluted for lactate racemase. with deionized water to decrease ionic strength . Pyruvic acid (3-14C) and tritiated water were Then, the sample was applied to a second purchased from the Radiochemical Centre, England. column chromatography of DEAE-cellulose Acrylate methyl ester (2, 3-14C) was obtained from (1 •~ 15 cm) which was pretreated with the Nuclear Research Chemicals, Inc., U.S.A., which was same buffer of McIlvaine mentioned above . Lactate Racemase 101 TABLE I Purification of lactate racemase. FIG. 1. Sedimentation patterns of lactate racemase. Ultracentrifugation was performed with the purified enzyme dissolved in 0.5m KC1, pH 5.0, in a Hitachi ultracentrifuge. Protein concentra tion was 1.7 mg per ml. Experimental conditions were as follows : temperature, 18•Ž; speed, 59,400 rpm ; bar angle, 55ß; pictures on the left and right were obtained after 28 and 48 min of centrifugation, respectively. Elution was also carried out in the same manner as presented above. Fractions giving high specific activity (tube number 7-13, each tube 10 ml) were collected and dialyzed against deionized water for 4 hr. The dialyzed preparation (120 ml) was charged on a DEAE FIG. 2. Electrophoretical pattern of lactate cellulose column (1 •~ 2 cm) buffered with the racemase. same concentration of Mcllvaine buffer in Electrophoretical pattern was obtained by the above, then the enzyme adsorbed was disc electrophoresis under the conditions of eluted with 2.0 ml of 0.5 Nt KCl. The enzyme ORNSTEIN and DAVIS (14) preparation obtained was concentrated 190 . The final preparation was used in the follow fold in specific activity. Whole procedure of ing sections for enzymatic study. the purification is summarized in Table I. 102 T. HIYAMA, S. FUKUI and K. KITAHARA Patterns in Ultracentrifugation and Electro molecular weight 12,600, Sankyo Co. Ltd., phoresis-Asedimentation pattern of the enzyme Tokyo) bovine serum albumin (assigned M.W., is shown in Fig.
Recommended publications
  • Nickel-Pincer Cofactor Biosynthesis Involves Larb-Catalyzed Pyridinium
    Nickel-pincer cofactor biosynthesis involves LarB- catalyzed pyridinium carboxylation and LarE- dependent sacrificial sulfur insertion Benoît Desguina,b, Patrice Soumillionb, Pascal Holsb, and Robert P. Hausingera,1 aDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824; and bInstitute of Life Sciences, Université catholique de Louvain, B-1348 Louvain-La-Neuve, Belgium Edited by Tadhg P. Begley, Texas A&M University, College Station, TX, and accepted by the Editorial Board March 28, 2016 (received for review January 11, 2016) The lactate racemase enzyme (LarA) of Lactobacillus plantarum proteins) when incubated with ATP (1 mM), MgCl2 (12 mM), harbors a (SCS)Ni(II) pincer complex derived from nicotinic acid. and the other purified proteins, and the activity was stimulated Synthesis of the enzyme-bound cofactor requires LarB, LarC, and fivefold by inclusion of CoA (10 mM) (SI Appendix,Fig.S1A– LarE, which are widely distributed in microorganisms. The functions D). These results are consistent with the requirement of a small of the accessory proteins are unknown, but the LarB C terminus molecule produced by LarB being needed for development of resembles aminoimidazole ribonucleotide carboxylase/mutase, LarC Lar activity. To uncover the substrate of LarB, we replaced the binds Ni and could act in Ni delivery or storage, and LarE is a putative LarB-containing lysates in the LarA activation mixture with ATP-using enzyme of the pyrophosphatase-loop superfamily. Here, purified LarB and potential substrates. Because nicotinic acid is a precursor of the Lar cofactor (1) and LarB features partial we show that LarB carboxylates the pyridinium ring of nicotinic acid sequence identity with PurE, an aminoimidazole ribonucleotide adenine dinucleotide (NaAD) and cleaves the phosphoanhydride (AIR) mutase/carboxylase (4), we tested the possibility that bond to release AMP.
    [Show full text]
  • Nzvi Impacts Substrate Conversion and Microbiome Composition in Chain Elongation from D- and L-Lactate Substrates
    fbioe-09-666582 June 9, 2021 Time: 17:45 # 1 ORIGINAL RESEARCH published: 15 June 2021 doi: 10.3389/fbioe.2021.666582 nZVI Impacts Substrate Conversion and Microbiome Composition in Chain Elongation From D- and L-Lactate Substrates Carlos A. Contreras-Dávila, Johan Esveld, Cees J. N. Buisman and David P. B. T. B. Strik* Environmental Technology, Wageningen University & Research, Wageningen, Netherlands Medium-chain carboxylates (MCC) derived from biomass biorefining are attractive biochemicals to uncouple the production of a wide array of products from the use of non-renewable sources. Biological conversion of biomass-derived lactate during secondary fermentation can be steered to produce a variety of MCC through chain Edited by: Caixia Wan, elongation. We explored the effects of zero-valent iron nanoparticles (nZVI) and University of Missouri, United States lactate enantiomers on substrate consumption, product formation and microbiome Reviewed by: composition in batch lactate-based chain elongation. In abiotic tests, nZVI supported Lan Wang, chemical hydrolysis of lactate oligomers present in concentrated lactic acid. In Institute of Process Engineering (CAS), China fermentation experiments, nZVI created favorable conditions for either chain-elongating Sergio Revah, or propionate-producing microbiomes in a dose-dependent manner. Improved lactate Metropolitan Autonomous University, · −1 Mexico conversion rates and n-caproate production were promoted at 0.5–2 g nZVI L while ≥ · −1 *Correspondence: propionate formation became relevant at 3.5 g nZVI L . Even-chain carboxylates David P. B. T. B. Strik (n-butyrate) were produced when using enantiopure and racemic lactate with lactate [email protected] conversion rates increased in nZVI presence (1 g·L−1).
    [Show full text]
  • SI Appendix Index 1
    SI Appendix Index Calculating chemical attributes using EC-BLAST ................................................................................ 2 Chemical attributes in isomerase reactions ............................................................................................ 3 Bond changes …..................................................................................................................................... 3 Reaction centres …................................................................................................................................. 5 Substrates and products …..................................................................................................................... 6 Comparative analysis …........................................................................................................................ 7 Racemases and epimerases (EC 5.1) ….................................................................................................. 7 Intramolecular oxidoreductases (EC 5.3) …........................................................................................... 8 Intramolecular transferases (EC 5.4) ….................................................................................................. 9 Supporting references …....................................................................................................................... 10 Fig. S1. Overview …............................................................................................................................
    [Show full text]
  • Unravelling Lactate‐Acetate and Sugar Conversion Into Butyrate By
    Environmental Microbiology (2020) 22(11), 4863–4875 doi:10.1111/1462-2920.15269 Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics Sudarshan A. Shetty ,1 Sjef Boeren,2 study demonstrates that A. soehngenii and several Thi P. N. Bui,1,3 Hauke Smidt1 and Willem M. de Vos 1,4* related Anaerobutyricum and Anaerostipes spp. are 1Laboratory of Microbiology, Wageningen University and highly adapted for a lifestyle involving lactate plus Research, Wageningen, The Netherlands. acetate utilization in the human intestinal tract. 2Laboratory of Biochemistry, Wageningen University and Research, Wageningen, The Netherlands. Introduction 3No Caelus Pharmaceuticals, Armsterdam, The Netherlands. The major fermentation end products in anaerobic colonic sugar fermentations are the short chain fatty acids 4Human Microbiome Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (SCFAs) acetate, propionate and butyrate. While all these SCFAs confer health benefits, butyrate is used to fuel colonic enterocytes and has been shown to inhibit Summary the proliferation and to induce apoptosis of tumour cells The D- and L-forms of lactate are important fermenta- (McMillan et al., 2003; Thangaraju et al., 2009; Topping tion metabolites produced by intestinal bacteria but and Clifton, 2001). Butyrate is also suggested to play a are found to negatively affect mucosal barrier func- role in gene expression as it is a known inhibitor of his- tion and human health. Both enantiomers of lactate tone deacetylases, and recently it was demonstrated that can be converted with acetate into the presumed ben- butyrate promotes histone crotonylation in vitro eficial butyrate by a phylogenetically related group of (Davie, 2003; Fellows et al., 2018).
    [Show full text]
  • Effects of High Forage/Concentrate Diet on Volatile Fatty Acid
    animals Article Effects of High Forage/Concentrate Diet on Volatile Fatty Acid Production and the Microorganisms Involved in VFA Production in Cow Rumen Lijun Wang 1,2, Guangning Zhang 2, Yang Li 2 and Yonggen Zhang 2,* 1 College of Animal Science and Technology, Qingdao Agricultural university, No. 700 of Changcheng Road, Qingdao 266000, China; [email protected] 2 College of Animal Science and Technology, Northeast Agricultural University, No. 600 of Changjiang Road, Harbin 150030, China; [email protected] (G.Z.); [email protected] (Y.L.) * Correspondence: [email protected]; Tel./Fax: +86-451-5519-0840 Received: 15 January 2020; Accepted: 28 January 2020; Published: 30 January 2020 Simple Summary: The rumen is well known as a natural bioreactor for highly efficient degradation of fibers, and rumen microbes play an important role on fiber degradation. Carbohydrates are fermented by a variety of bacteria in the rumen and transformed into volatile fatty acids (VFAs) by the corresponding enzymes. However, the content of forage in the diet affects the metabolism of cellulose degradation and VFA production. Therefore, we combine metabolism and metagenomics to explore the effects of High forage/concentrate diets and sampling time on enzymes and microorganisms involved in the metabolism of fiber and VFA in cow rumen. This study showed that propionate formation via the succinic pathway, in which succinate CoA synthetase (EC 6.2.1.5) and propionyl CoA carboxylase (EC 2.8.3.1) were key enzymes. Butyrate formation via the succinic pathway, in which phosphate butyryltransferase (EC 2.3.1.19), butyrate kinase (EC 2.7.2.7) and pyruvate ferredoxin oxidoreductase (EC 1.2.7.1) are the important enzymes.
    [Show full text]
  • Perspectives
    PERSPECTIVES in a number of enzymes such as [FeFe]- hydrogenase, [FeNi]-hydrogenase, Natural inspirations for metal–ligand [Fe]-hydrogenase, lactate racemase and alcohol dehydrogenase. In this Perspective, cooperative catalysis we discuss these examples of biological cooperative catalysis and how, inspired by these naturally occurring systems, chemists Matthew D. Wodrich and Xile Hu have sought to create functional analogues. Abstract | In conventional homogeneous catalysis, supporting ligands act as We also speculate that cooperative catalysis spectators that do not interact directly with substrates. However, in metal–ligand may be at play in [NiFe]-carbon monoxide cooperative catalysis, ligands are involved in facilitating reaction pathways that dehydrogenase ([NiFe]-CODHase), which may inspire the design of synthetic CO2 would be less favourable were they to occur solely at the metal centre. This reduction catalysts making use of these catalysis paradigm has been known for some time, in part because it is at play motifs. Each section in the following in enzyme catalysis. For example, studies of hydrogenative and dehydrogenative discussion is devoted to an enzyme and its enzymes have revealed striking details of metal–ligand cooperative catalysis synthetic models. that involve functional groups proximal to metal active sites. In addition to [FeFe]- and [NiFe]-hydrogenase the more well-known [FeFe]-hydrogenase and [NiFe]-hydrogenase enzymes, Hydrogenases are enzymes that catalyse [Fe]-hydrogenase, lactate racemase and alcohol dehydrogenase each makes use (REF. 5) the production and utilization of H2 . of cooperative catalysis. This Perspective highlights these enzymatic examples of Three variants of hydrogenase enzymes exist metal–ligand cooperative catalysis and describes functional bioinspired which are named [FeFe]-, [NiFe]- and [Fe]-hydrogenase because their active molecular catalysts that also make use of these motifs.
    [Show full text]
  • Uncovering a Superfamily of Nickel-Dependent Hydroxyacid
    www.nature.com/scientificreports OPEN Uncovering a superfamily of nickel‑dependent hydroxyacid racemases and epimerases Benoît Desguin 1*, Julian Urdiain‑Arraiza1, Matthieu Da Costa2, Matthias Fellner 3,4, Jian Hu4,5, Robert P. Hausinger 4,6, Tom Desmet 2, Pascal Hols 1 & Patrice Soumillion 1 Isomerization reactions are fundamental in biology. Lactate racemase, which isomerizes L‑ and D‑lactate, is composed of the LarA protein and a nickel‑containing cofactor, the nickel‑pincer nucleotide (NPN). In this study, we show that LarA is part of a superfamily containing many diferent enzymes. We overexpressed and purifed 13 lactate racemase homologs, incorporated the NPN cofactor, and assayed the isomerization of diferent substrates guided by gene context analysis. We discovered two malate racemases, one phenyllactate racemase, one α‑hydroxyglutarate racemase, two D‑gluconate 2‑epimerases, and one short‑chain aliphatic α‑hydroxyacid racemase among the tested enzymes. We solved the structure of a malate racemase apoprotein and used it, along with the previously described structures of lactate racemase holoprotein and D‑gluconate epimerase apoprotein, to identify key residues involved in substrate binding. This study demonstrates that the NPN cofactor is used by a diverse superfamily of α‑hydroxyacid racemases and epimerases, widely expanding the scope of NPN‑dependent enzymes. Chemical isomers exhibit subtle changes in their structures, yet can show dramatic diferences in biological properties1. Interconversions of isomers by isomerases are important in the metabolism of living organisms and have many applications in biocatalysis, biotechnology, and drug discovery2. Tese enzymes are divided into 6 classes, depending on the type of reaction catalyzed: racemases and epimerases, cis–trans isomerases, intramo- lecular oxidoreductases, intramolecular transferases, intramolecular lyases, and other isomerases3.
    [Show full text]
  • The Chemistry and Evolution of Enzyme Function
    The Chemistry and Evolution of Enzyme Function: Isomerases as a Case Study Sergio Mart´ınez Cuesta EMBL - European Bioinformatics Institute Gonville and Caius College University of Cambridge A thesis submitted for the degree of Doctor of Philosophy 31st July 2014 This dissertation is the result of my own work and contains nothing which is the outcome of work done in collaboration except where specifically indicated in the text. No part of this dissertation has been submitted or is currently being submitted for any other degree or diploma or other qualification. This thesis does not exceed the specified length limit of 60.000 words as defined by the Biology Degree Committee. This thesis has been typeset in 12pt font using LATEX according to the specifications de- fined by the Board of Graduate Studies and the Biology Degree Committee. Cambridge, 31st July 2014 Sergio Mart´ınezCuesta To my parents and my sister Contents Abstract ix Acknowledgements xi List of Figures xiii List of Tables xv List of Publications xvi 1 Introduction 1 1.1 Chemistry of enzymes . .2 1.1.1 Catalytic sites, mechanisms and cofactors . .3 1.1.2 Enzyme classification . .5 1.2 Evolution of enzyme function . .6 1.3 Similarity between enzymes . .8 1.3.1 Comparing sequences and structures . .8 1.3.2 Comparing genomic context . .9 1.3.3 Comparing biochemical reactions and mechanisms . 10 1.4 Isomerases . 12 1.4.1 Metabolism . 13 1.4.2 Genome . 14 1.4.3 EC classification . 15 1.4.4 Applications . 18 1.5 Structure of the thesis . 20 2 Data Resources and Methods 21 2.1 Introduction .
    [Show full text]
  • Methane-Yielding Microbial Communities Processing Lactate-Rich Medium to Methane M1A M1B
    Detman et al. Biotechnol Biofuels (2018) 11:116 https://doi.org/10.1186/s13068-018-1106-z Biotechnology for Biofuels RESEARCH Open Access Methane‑yielding microbial communities processing lactate‑rich substrates: a piece of the anaerobic digestion puzzle Anna Detman1, Damian Mielecki1, Łukasz Pleśniak1, Michał Bucha2, Marek Janiga3, Irena Matyasik3, Aleksandra Chojnacka1, Mariusz‑Orion Jędrysek4, Mieczysław K. Błaszczyk5 and Anna Sikora1* Abstract Background: Anaerobic digestion, whose fnal products are methane and carbon dioxide, ensures energy fow and circulation of matter in ecosystems. This naturally occurring process is used for the production of renewable energy from biomass. Lactate, a common product of acidic fermentation, is a key intermediate in anaerobic digestion of biomass in the environment and biogas plants. Efective utilization of lactate has been observed in many experimen‑ tal approaches used to study anaerobic digestion. Interestingly, anaerobic lactate oxidation and lactate oxidizers as a physiological group in methane-yielding microbial communities have not received enough attention in the context of the acetogenic step of anaerobic digestion. This study focuses on metabolic transformation of lactate during the acetogenic and methanogenic steps of anaerobic digestion in methane-yielding bioreactors. Results: Methane-yielding microbial communities instead of pure cultures of acetate producers were used to process artifcial lactate-rich media to methane and carbon dioxide in up-fow anaerobic sludge blanket reactors. The media imitated the mixture of acidic products found in anaerobic environments/digesters where lactate fermentation dominates in acidogenesis. Efective utilization of lactate and biogas production was observed. 16S rRNA profling was used to examine the selected methane-yielding communities. Among Archaea present in the bioreactors, the order Methanosarcinales predominated.
    [Show full text]
  • All Enzymes in BRENDA™ the Comprehensive Enzyme Information System
    All enzymes in BRENDA™ The Comprehensive Enzyme Information System http://www.brenda-enzymes.org/index.php4?page=information/all_enzymes.php4 1.1.1.1 alcohol dehydrogenase 1.1.1.B1 D-arabitol-phosphate dehydrogenase 1.1.1.2 alcohol dehydrogenase (NADP+) 1.1.1.B3 (S)-specific secondary alcohol dehydrogenase 1.1.1.3 homoserine dehydrogenase 1.1.1.B4 (R)-specific secondary alcohol dehydrogenase 1.1.1.4 (R,R)-butanediol dehydrogenase 1.1.1.5 acetoin dehydrogenase 1.1.1.B5 NADP-retinol dehydrogenase 1.1.1.6 glycerol dehydrogenase 1.1.1.7 propanediol-phosphate dehydrogenase 1.1.1.8 glycerol-3-phosphate dehydrogenase (NAD+) 1.1.1.9 D-xylulose reductase 1.1.1.10 L-xylulose reductase 1.1.1.11 D-arabinitol 4-dehydrogenase 1.1.1.12 L-arabinitol 4-dehydrogenase 1.1.1.13 L-arabinitol 2-dehydrogenase 1.1.1.14 L-iditol 2-dehydrogenase 1.1.1.15 D-iditol 2-dehydrogenase 1.1.1.16 galactitol 2-dehydrogenase 1.1.1.17 mannitol-1-phosphate 5-dehydrogenase 1.1.1.18 inositol 2-dehydrogenase 1.1.1.19 glucuronate reductase 1.1.1.20 glucuronolactone reductase 1.1.1.21 aldehyde reductase 1.1.1.22 UDP-glucose 6-dehydrogenase 1.1.1.23 histidinol dehydrogenase 1.1.1.24 quinate dehydrogenase 1.1.1.25 shikimate dehydrogenase 1.1.1.26 glyoxylate reductase 1.1.1.27 L-lactate dehydrogenase 1.1.1.28 D-lactate dehydrogenase 1.1.1.29 glycerate dehydrogenase 1.1.1.30 3-hydroxybutyrate dehydrogenase 1.1.1.31 3-hydroxyisobutyrate dehydrogenase 1.1.1.32 mevaldate reductase 1.1.1.33 mevaldate reductase (NADPH) 1.1.1.34 hydroxymethylglutaryl-CoA reductase (NADPH) 1.1.1.35 3-hydroxyacyl-CoA
    [Show full text]
  • Application-Oriented Marine Isomerases in Biocatalysis
    marine drugs Review Application-Oriented Marine Isomerases in Biocatalysis Antonio Trincone Institute of Biomolecular Chemistry, National Research Council, Via Campi Flegrei, 34, 80078 Pozzuoli, Italy; [email protected] Received: 3 November 2020; Accepted: 20 November 2020; Published: 21 November 2020 Abstract: The class EC 5.xx, a group of enzymes that interconvert optical, geometric, or positional isomers are interesting biocatalysts for the synthesis of pharmaceuticals and pharmaceutical intermediates. This class, named “isomerases,” can transform cheap biomolecules into expensive isomers with suitable stereochemistry useful in synthetic medicinal chemistry, and interesting cases of production of l-ribose, d-psicose, lactulose, and d-phenylalanine are known. However, in two published reports about potential biocatalysts of marine origin, isomerases are hardly mentioned. Therefore, it is of interest to deepen the knowledge of these biocatalysts from the marine environment with this specialized in-depth analysis conducted using a literature search without time limit constraints. In this review, the focus is dedicated mainly to example applications in biocatalysis that are not numerous confirming the general view previously reported. However, from this overall literature analysis, curiosity-driven scientific interest for marine isomerases seems to have been long-standing. However, the major fields in which application examples are framed are placed at the cutting edge of current biotechnological development. Since these enzymes can offer properties of industrial interest, this will act as a promoter for future studies of marine-originating isomerases in applied biocatalysis. Keywords: marine enzymes; biocatalysis; marine biotechnology 1. Introduction In 2010, one of the first comprehensive review articles about enzymes of marine origin especially suitable for future applications in biocatalysis reported an account of the knowledge in the field.
    [Show full text]
  • Alternative Coenzymes for Biocatalysis
    Delft University of Technology Alternative coenzymes for biocatalysis Guarneri, Alice; van Berkel, Willem JH; Paul, Caroline E. DOI 10.1016/j.copbio.2019.01.001 Publication date 2019 Document Version Final published version Published in Current Opinion in Biotechnology Citation (APA) Guarneri, A., van Berkel, W. JH., & Paul, C. E. (2019). Alternative coenzymes for biocatalysis. Current Opinion in Biotechnology, 60, 63-71. https://doi.org/10.1016/j.copbio.2019.01.001 Important note To cite this publication, please use the final published version (if applicable). Please check the document version above. Copyright Other than for strictly personal use, it is not permitted to download, forward or distribute the text or part of it, without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license such as Creative Commons. Takedown policy Please contact us and provide details if you believe this document breaches copyrights. We will remove access to the work immediately and investigate your claim. This work is downloaded from Delft University of Technology. For technical reasons the number of authors shown on this cover page is limited to a maximum of 10. Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public. Available online at www.sciencedirect.com ScienceDirect Alternative coenzymes for biocatalysis 1 2 3 Alice Guarneri , Willem JH van Berkel and Caroline E Paul Coenzymes are ubiquitous in Nature, assisting in enzyme- adenosyl-L-methionine (SAM) in transferases.
    [Show full text]