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Mosquito Species Identification Using Convolutional Neural Networks With
www.nature.com/scientificreports OPEN Mosquito species identifcation using convolutional neural networks with a multitiered ensemble model for novel species detection Adam Goodwin1,2*, Sanket Padmanabhan1,2, Sanchit Hira2,3, Margaret Glancey1,2, Monet Slinowsky2, Rakhil Immidisetti2,3, Laura Scavo2, Jewell Brey2, Bala Murali Manoghar Sai Sudhakar1, Tristan Ford1,2, Collyn Heier2, Yvonne‑Marie Linton4,5,6, David B. Pecor4,5,6, Laura Caicedo‑Quiroga4,5,6 & Soumyadipta Acharya2* With over 3500 mosquito species described, accurate species identifcation of the few implicated in disease transmission is critical to mosquito borne disease mitigation. Yet this task is hindered by limited global taxonomic expertise and specimen damage consistent across common capture methods. Convolutional neural networks (CNNs) are promising with limited sets of species, but image database requirements restrict practical implementation. Using an image database of 2696 specimens from 67 mosquito species, we address the practical open‑set problem with a detection algorithm for novel species. Closed‑set classifcation of 16 known species achieved 97.04 ± 0.87% accuracy independently, and 89.07 ± 5.58% when cascaded with novelty detection. Closed‑set classifcation of 39 species produces a macro F1‑score of 86.07 ± 1.81%. This demonstrates an accurate, scalable, and practical computer vision solution to identify wild‑caught mosquitoes for implementation in biosurveillance and targeted vector control programs, without the need for extensive image database development for each new target region. Mosquitoes are one of the deadliest animals in the world, infecting between 250–500 million people every year with a wide range of fatal or debilitating diseases, including malaria, dengue, chikungunya, Zika and West Nile Virus1. -
1 It's All Geek to Me: Translating Names Of
IT’S ALL GEEK TO ME: TRANSLATING NAMES OF INSECTARIUM ARTHROPODS Prof. J. Phineas Michaelson, O.M.P. U.S. Biological and Geological Survey of the Territories Central Post Office, Denver City, Colorado Territory [or Year 2016 c/o Kallima Consultants, Inc., PO Box 33084, Northglenn, CO 80233-0084] ABSTRACT Kids today! Why don’t they know the basics of Greek and Latin? Either they don’t pay attention in class, or in many cases schools just don’t teach these classic languages of science anymore. For those who are Latin and Greek-challenged, noted (fictional) Victorian entomologist and explorer, Prof. J. Phineas Michaelson, will present English translations of the scientific names that have been given to some of the popular common arthropods available for public exhibits. This paper will explore how species get their names, as well as a brief look at some of the naturalists that named them. INTRODUCTION Our education system just isn’t what it used to be. Classic languages such as Latin and Greek are no longer a part of standard curriculum. Unfortunately, this puts modern students of science at somewhat of a disadvantage compared to our predecessors when it comes to scientific names. In the insectarium world, Latin and Greek names are used for the arthropods that we display, but for most young entomologists, these words are just a challenge to pronounce and lack meaning. Working with arthropods, we all know that Entomology is the study of these animals. Sounding similar but totally different, Etymology is the study of the origin of words, and the history of word meaning. -
Data-Driven Identification of Potential Zika Virus Vectors Michelle V Evans1,2*, Tad a Dallas1,3, Barbara a Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8
RESEARCH ARTICLE Data-driven identification of potential Zika virus vectors Michelle V Evans1,2*, Tad A Dallas1,3, Barbara A Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8 1Odum School of Ecology, University of Georgia, Athens, United States; 2Center for the Ecology of Infectious Diseases, University of Georgia, Athens, United States; 3Department of Environmental Science and Policy, University of California-Davis, Davis, United States; 4Cary Institute of Ecosystem Studies, Millbrook, United States; 5Department of Infectious Disease, University of Georgia, Athens, United States; 6Center for Tropical Emerging Global Diseases, University of Georgia, Athens, United States; 7Center for Vaccines and Immunology, University of Georgia, Athens, United States; 8River Basin Center, University of Georgia, Athens, United States Abstract Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. pipiens. We suggest that empirical studies prioritize these species to confirm predictions of vector competence, enabling the correct identification of populations at risk for transmission within the United States. *For correspondence: mvevans@ DOI: 10.7554/eLife.22053.001 uga.edu Competing interests: The authors declare that no competing interests exist. -
Nuevos Registros De Especies De Mosquitos (Diptera: Culicidae) De La Comarca
doi.org/10.21640/ns.v12i25.2651 Ciencias Naturales e Ingenierías Nuevos registros de especies de mosquitos (Diptera: Culicidae) de la Comarca Lagunera de Durango, México New records of mosquito species (Diptera: Culicidae) in La Comarca Lagunera, Durango, Mexico Rafael Vázquez-Marroquín1,2 Mónica Duarte-Andrade1 Luis M. Hernández-Triana3 Aldo I. Ortega-Morales4 Rahuel J. Chan-Chable1 1 Universidad Autónoma Agraria Antonio Narro, Postgrado en Ciencias en Producción Agropecuaria, Unidad Laguna 2 Instituto de Salud del Estado de Chiapas, Distrito de Salud No. X, Motozintla 3 Animal and Plant Health Agency, Virology Department, Rabies and Viral Zoonoses (VI1), London 4 Universidad Autónoma Agraria Antonio Narro, Departamento de Parasitología, Unidad Laguna Autor para correspondencia: Rafael Vázquez-Marroquín, E-mail: [email protected] Resumen Introducción: Un número notable de mosquitos tienen gran importancia médica y veterinaria debido a que transmiten numerosos patógenos que causan enfermedades en los animales y los seres humanos, por lo que conocer su taxonomía y distribución es fundamental para aplicar estrategias de control correctas. El objetivo de este estudio fue determinar la presencia de especies de mosquitos y su distribución en la Comarca Lagunera del estado de Durango, México. Método: Entre agosto y noviembre de 2018 fueron colectados mosquitos adultos utilizando aspiradores de campo (Insectzookas) en diferentes sitios de reposo en cuatro municipios. También se tomaron muestras de los hábitats acuáticos para la colecta de etapas inmaduras. Los especímenes adultos se mataron utilizando cámaras letales con vapores de trietilamina, mientras que las larvas y las pupas se almacenaron en tubos individuales para obtener los estadios adultos y las exuvias asociadas. -
Identification Key for Mosquito Species
‘Reverse’ identification key for mosquito species More and more people are getting involved in the surveillance of invasive mosquito species Species name used Synonyms Common name in the EU/EEA, not just professionals with formal training in entomology. There are many in the key taxonomic keys available for identifying mosquitoes of medical and veterinary importance, but they are almost all designed for professionally trained entomologists. Aedes aegypti Stegomyia aegypti Yellow fever mosquito The current identification key aims to provide non-specialists with a simple mosquito recog- Aedes albopictus Stegomyia albopicta Tiger mosquito nition tool for distinguishing between invasive mosquito species and native ones. On the Hulecoeteomyia japonica Asian bush or rock pool Aedes japonicus japonicus ‘female’ illustration page (p. 4) you can select the species that best resembles the specimen. On japonica mosquito the species-specific pages you will find additional information on those species that can easily be confused with that selected, so you can check these additional pages as well. Aedes koreicus Hulecoeteomyia koreica American Eastern tree hole Aedes triseriatus Ochlerotatus triseriatus This key provides the non-specialist with reference material to help recognise an invasive mosquito mosquito species and gives details on the morphology (in the species-specific pages) to help with verification and the compiling of a final list of candidates. The key displays six invasive Aedes atropalpus Georgecraigius atropalpus American rock pool mosquito mosquito species that are present in the EU/EEA or have been intercepted in the past. It also contains nine native species. The native species have been selected based on their morpho- Aedes cretinus Stegomyia cretina logical similarity with the invasive species, the likelihood of encountering them, whether they Aedes geniculatus Dahliana geniculata bite humans and how common they are. -
Zootaxa, New Records of Haemagogus
Zootaxa 1779: 65–68 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Correspondence ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) New records of Haemagogus (Haemagogus) from Northern and Northeastern Brazil (Diptera: Culicidae, Aedini) JERÔNIMO ALENCAR1, FRANCISCO C. CASTRO2, HAMILTON A. O. MONTEIRO2, ORLANDO V. SILVA 2, NICOLAS DÉGALLIER3, CARLOS BRISOLA MARCONDES4*, ANTHONY E. GUIMARÃES1 1Laboratório de Diptera, Departamento de Entomologia, Instituto Oswaldo Cruz, Av. Brasil 4365, CEP: 21045-900 Manguinhos, Rio de Janeiro RJ, Brazil. 2Laboratório de Arbovírus, Instituto Evandro Chagas, Av. Almirante Barroso 492, CEP: 66090-000, Belém, PA, Brazil. 3Institut de Recherche pour le Développement (IRD-UMR182), LOCEAN-IPSL, case 100, 4 Place Jussieu, 75252 Paris Cedex 05, France 4 Departamento de Microbiologia e Parasitologia, Centro de Ciências Biológicas, Universidade Federal de Santa Catarina, 88040- 900 Florianópolis, Santa Catarina, Brazil Haemagogus (Haemagogus) is restricted mostly to the Neotropical Region, including Central America, South America and islands (Arnell, 1973). Of the 24 recognized species of this subgenus, 15 occur in South America, including the Anti- lles. However, the centre of distribution of the genus Haemagogus is Central America, where 19 of the 28 species (including four species of the subgenus Conopostegus Zavortink [1972]) occur (Arnell, 1973). Haemagogus (Hag.) includes species with great significance as vectors of Yellow Fever (YF) virus and other arbovi- rus, both experimentally (Waddell, 1949) and in the field (Vasconcelos, 2003). During entomological surveys from 1982 to 2004, the Arbovirus Laboratory of Evandro Chagas Institute obtained specimens of Haemagogus from several localities not reported in the literature. New records are listed in Table 1 and study localities shown on Figure 1. -
A Mosquito Psorophora Ciliata (Fabricius) (Insecta: Diptera: Culicidae)1 Ephraim V
EENY-540 A Mosquito Psorophora ciliata (Fabricius) (Insecta: Diptera: Culicidae)1 Ephraim V. Ragasa and Phillip E. Kaufman2 Introduction For additional information on mosquitoes, see http://edis. ifas.ufl.edu/IN652. Psorophora ciliata (Fabricius) is a large mosquito (Cutwa and O’Meara 2005) that has developed an outsized reputa- tion because of its relatively intimidating heft and persistent Synonymy biting behavior (Gladney and Turner 1969), including Psorophora ciliata (Fabricius 1794) anecdotal historical accounts of its legendary aggressiveness Culex ciliata Fabricius (1794) (Wallis and Whitman 1971) and ‘frightening appearance’ Culex conterrens Walker (1856) (King et al. 1960). The ‘gallinipper’ or ‘shaggy-legged Culex molestus Weidemann (1820) gallinipper’ was used as a common name for Psorophora Culex rubidus Robineau-Desvoidy (1827) ciliata in various published reports (Ross 1947; King et al. Psorophora boscii Robineau-Desvoidy (1827) 1960; Breeland et al. 1961; Goddard et al. 2009). The term Psorophora ctites Dyar (1918) was mentioned much earlier by Flanery (1897) describing (From ITIS 2011) the mosquito as ‘the little zebra-legged thing—the shyest, slyest, meanest, and most venomous of them all’ [sic] but Distribution did not specify what species it was. The word gallinipper Psorophora ciliata usually is associated with other flood- originated as a vernacular term in the southeastern region water mosquitoes, including many species from the Aedes of the United States referring to ‘a large mosquito or other genera (Breeland et al. 1961), and has a wide distribution insect that has a painful bite or sting’ and has appeared in the New World. Floodwater mosquitoes often lay in folk tales, traditional minstrel songs, and a blues their eggs in low-lying areas with damp soil and grassy song referencing a large mosquito with a ‘fearsome bite’ overgrowth. -
The Pennsylvania State University the Graduate School College Of
The Pennsylvania State University The Graduate School College of Agricultural Sciences SPECIES-SPECIFICITY OF THREE COMMONLY USED AND TWO NOVEL MOSQUITO FIELD-SAMPLING DEVICES A Thesis in Entomology by Loyal Philip Hall © 2012 Loyal Philip Hall Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science May 2012 ii The thesis of Loyal Philip Hall was reviewed and approved* by the following: Gary Felton Professor and Department Head of Entomology Thomas Baker Distinguished Professor of Entomology Thesis Advisor James Marden Professor of Biology Michael Saunders Professor of Entomology Matthew Thomas Professor of Entomology *Signatures are on file in the Graduate School. iii Abstract Effective sampling is a stepping-stone to efficient use of resources, targeted control efforts, and success in nuisance or vector mosquito management. Effective sampling to identify locations where disease-vectoring mosquitoes are present and to monitor population levels allows control measures to be targeted towards medically important mosquitoes, and can reduce the environmental and financial costs associated with widespread, indiscriminate pesticide application while also preventing the failure to initiate control in an area due to a perception that there are few important mosquitoes present. A comparative study between the CDC light trap, ABC light trap, Reiter-Cummings gravid trap, and two traps developed by the author was conducted to test for species-specificity of each trap type. It was found that while no trap was superior over-all, certain species of mosquitoes are more likely to be detected and their populations monitored by some types of traps compared to others and the novel traps were shown to often be as effective in sampling certain important target species of mosquito as the tested commercial mosquito traps. -
Diptera: Culicidae: Aedini) Into New Geographic Areas
European Mosquito Bulletin, 27 (2009), 10-17. Journal of the European Mosquito Control Association ISSN 1460-6127; w.w.w.e-m-b.org First published online 1 October 2009 Recent introductions of aedine species (Diptera: Culicidae: Aedini) into new geographic areas John F. Reinert Center for Medical, Agricultural and Veterinary Entomology (CMAVE), United States Department of Agriculture, Agricultural Research Service, 1600/1700 S.W. 23rd Drive, Gainesville, FL 32608-1067, USA, Email: [email protected]. Abstract Information on introductions to new geographic areas of species in the aedine generic-level taxa Aedimorphus, Finlaya, Georgecraigius, Halaedes, Howardina, Hulecoeteomyia, Rampamyia, Stegomyia, Tanakaius and Verrallina is provided. Key words: Aedimorphus, Finlaya, Georgecraigius atropalpus, Halaedes australis, Howardina bahamensis, Hulecoeteomyia japonica japonica, Rampamyia notoscripta, Stegomyia aegypti, Stegomyia albopicta, Tanakaius togoi, Verrallina Introduction World. Dyar (1928), however, notes that there are no nearly related species in As indicated in the series of papers on the American continent, but many such the phylogeny and classification of in the Old World, especially in Africa, mosquitoes in tribe Aedini (Reinert et and he considered that it was probably al., 2004, 2006, 2008), some aedine the African continent from which the species have been introduced into new species originated”. Christophers also geographical areas in recent times. noted that “The species is almost the Species of Aedini found outside of their only, if not the only, mosquito that, with natural ranges are listed below with their human agency, is spread around the literature citations. whole globe. But in spite of this wide zonal diffusion its distribution is very Introductions of Aedine Species to strictly limited by latitude and as far as New Areas present records go it very rarely occurs beyond latitudes of 45o N. -
ARTHROPODA Subphylum Hexapoda Protura, Springtails, Diplura, and Insects
NINE Phylum ARTHROPODA SUBPHYLUM HEXAPODA Protura, springtails, Diplura, and insects ROD P. MACFARLANE, PETER A. MADDISON, IAN G. ANDREW, JOCELYN A. BERRY, PETER M. JOHNS, ROBERT J. B. HOARE, MARIE-CLAUDE LARIVIÈRE, PENELOPE GREENSLADE, ROSA C. HENDERSON, COURTenaY N. SMITHERS, RicarDO L. PALMA, JOHN B. WARD, ROBERT L. C. PILGRIM, DaVID R. TOWNS, IAN McLELLAN, DAVID A. J. TEULON, TERRY R. HITCHINGS, VICTOR F. EASTOP, NICHOLAS A. MARTIN, MURRAY J. FLETCHER, MARLON A. W. STUFKENS, PAMELA J. DALE, Daniel BURCKHARDT, THOMAS R. BUCKLEY, STEVEN A. TREWICK defining feature of the Hexapoda, as the name suggests, is six legs. Also, the body comprises a head, thorax, and abdomen. The number A of abdominal segments varies, however; there are only six in the Collembola (springtails), 9–12 in the Protura, and 10 in the Diplura, whereas in all other hexapods there are strictly 11. Insects are now regarded as comprising only those hexapods with 11 abdominal segments. Whereas crustaceans are the dominant group of arthropods in the sea, hexapods prevail on land, in numbers and biomass. Altogether, the Hexapoda constitutes the most diverse group of animals – the estimated number of described species worldwide is just over 900,000, with the beetles (order Coleoptera) comprising more than a third of these. Today, the Hexapoda is considered to contain four classes – the Insecta, and the Protura, Collembola, and Diplura. The latter three classes were formerly allied with the insect orders Archaeognatha (jumping bristletails) and Thysanura (silverfish) as the insect subclass Apterygota (‘wingless’). The Apterygota is now regarded as an artificial assemblage (Bitsch & Bitsch 2000). -
Psorophora Columbiae (Dyar & Knab) (Insecta: Diptera: Culicidae)1 Christopher S
EENY-735 Dark Rice Field Mosquito (suggested common name) Psorophora columbiae (Dyar & Knab) (Insecta: Diptera: Culicidae)1 Christopher S. Bibbs, Derrick Mathias, and Nathan Burkett-Cadena2 Introduction Psorophora columbiae is a member of the broader Psorphora confinnis species complex (a group of closely-related spe- cies) that occurs across much of North and South America. This mosquito is associated with sun-exposed ephemeral water sources such as pooled water in agricultural lands and disturbed or grassy landscapes. The ubiquity of these habitats among agrarian and peridomestic landscapes contribute to explosive abundance of Psorophora columbiae following periods of high precipitation. Psorophora colum- biae is both a common nuisance mosquito and significant livestock pest. Common names of Psorophora columbiae vary by Figure 1. Psorophora columbiae (Dyar & Knab) adult female. region. In rice-growing regions of Arkansas, Florida, and Credits: Nathan Burkett-Cadena, UF/IFAS Louisiana Psorophora columbiae is known as the dark rice field mosquito because of its overall dark coloration and Synonymy proliferation in flooded rice fields. In the Atlantic Seaboard Janthinosoma columbiae Dyar & Knab (1906) region Psorophora columbiae is colloquially referred to as the glades mosquito or the Florida glades mosquito (King Janthinosoma floridense Dyar & Knab (1906) et al. 1960) due to its association with grasslands (glades) in otherwise forested areas. Janthinosoma texanum Dyar & Knab (1906) From the Integrated Taxonomic Information System and International Commission on Zoological Nomenclature. 1. This document is EENY-735, one of a series of the Entomology and Nematology Department, UF/IFAS Extension. Original publication date August 2019. Visit the EDIS website at https://edis.ifas.ufl.edu for the currently supported version of this publication. -
Disturbance and Mosquito Diversity in the Lowland Tropical Rainforest of Central Panama Received: 28 October 2016 Jose R
www.nature.com/scientificreports OPEN Disturbance and mosquito diversity in the lowland tropical rainforest of central Panama Received: 28 October 2016 Jose R. Loaiza1,2,3, Larissa C. Dutari1, Jose R. Rovira1,2, Oris I. Sanjur2, Gabriel Z. Laporta 4,5, Accepted: 28 June 2017 James Pecor6, Desmond H. Foley6, Gillian Eastwood7, Laura D. Kramer7, Meghan Radtke8 & Published: xx xx xxxx Montira Pongsiri8 The Intermediate Disturbance Hypothesis (IDH) is well-known in ecology providing an explanation for the role of disturbance in the coexistence of climax and colonist species. Here, we used the IDH as a framework to describe the role of forest disturbance in shaping the mosquito community structure, and to identify the ecological processes that increase the emergence of vector-borne disease. Mosquitoes were collected in central Panama at immature stages along linear transects in colonising, mixed and climax forest habitats, representing diferent levels of disturbance. Species were identifed taxonomically and classifed into functional categories (i.e., colonist, climax, disturbance-generalist, and rare). Using the Huisman-Olf-Fresco multi-model selection approach, IDH testing was done. We did not detect a unimodal relationship between species diversity and forest disturbance expected under the IDH; instead diversity peaked in old-growth forests. Habitat complexity and constraints are two mechanisms proposed to explain this alternative postulate. Moreover, colonist mosquito species were more likely to be involved in or capable of pathogen transmission than climax species. Vector species occurrence decreased notably in undisturbed forest settings. Old-growth forest conservation in tropical rainforests is therefore a highly-recommended solution for preventing new outbreaks of arboviral and parasitic diseases in anthropic environments.