Bacterial-Metal/Radionuclide Interaction. Basis Research And
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Composition and Diversity of Endophytic Bacterial Communities in Noni (Morinda Citrifolia L.) Seeds
International Journal of Agricultural Policy and Research Vol.2 (3), pp. 098-104, March 2014 Available online at http://www.journalissues.org/ijapr/ © 2014 Journal Issues ISSN 2350-1561 Original Research Paper Composition and diversity of endophytic bacterial communities in noni (Morinda citrifolia L.) seeds Accepted 14 February, 2014 *1Liu Yang, 1Yao Su , 2Xu The objective of this study is to investigate the endophytic bacterial Pengpeng , 1Cao Yanhua , communities in Noni (Morinda citrifolia L.) seeds. By using high-throughput 1 1 sequencing (HTS) technique, a research on the diversity of endophytic Li Jinxia , Wang bacterial communities in Noni seed samples was conducted by this paper, 3 Jiemiao , Tan Wangqiao, which were collected from four planting locations in the introduction and 1Cheng Chi cultivation base of Hainan Noni Biological Engineering Development Co., Ltd. in Sanya. A total of 268159 sequences and 2870 Operational Taxonomic Units 1 China National Research Institute (OTUs) were obtained from the seed samples, which were classified into N1, of Food and Fermentation N2, N3 and N4, through HTS by bioinformatics analysis. The results showed Industries, Beijing 100015, People’s that there was a good consistency between bacterial community structure and Republic of China distribution of dominant genus in all samples. A mount of 10 OTUs of the most 2 Beijing Geneway Technology Co., Ltd., Beijing 100010, People’s abundance associated with the four sample libraries were found to be related Republic of China. to Pelomonas sp., Ochrobactrum intermedium, Kinneretia sp., Serratia sp., 3 Hainan Noni Biological Paucibacter sp., Leptothrix sp., Inhella sp., Ewingella sp., Thiomonas sp. and Engineering Development Co., Ltd., Massilia sp..This study has laid a solid foundation for further study in Haikou 570125, People’s Republic beneficial microbes, which would help to improve the growth and efficacy of of China. -
Confocal Raman Microscope Mapping As a Tool to Describe Different
Biogeosciences, 8, 3761–3769, 2011 www.biogeosciences.net/8/3761/2011/ Biogeosciences doi:10.5194/bg-8-3761-2011 © Author(s) 2011. CC Attribution 3.0 License. Confocal Raman microscope mapping as a tool to describe different mineral and organic phases at high spatial resolution within marine biogenic carbonates: case study on Nerita undata (Gastropoda, Neritopsina) G. Nehrke1 and J. Nouet2 1Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany 2University Paris Sud, IDES UMR 8148, batimentˆ 504, campus universitaire, 91405 Orsay cedex, France Received: 20 May 2011 – Published in Biogeosciences Discuss.: 9 June 2011 Revised: 10 November 2011 – Accepted: 7 December 2011 – Published: 20 December 2011 Abstract. Marine biogenic carbonates formed by inverte- 1 Introduction brates (e.g. corals and mollusks) represent complex compos- ites of one or more mineral phases and organic molecules. Calcium carbonates formed by marine calcifying organisms This complexity ranges from the macroscopic structures ob- (e.g. corals and mollusks) received much attention in the field served with the naked eye down to sub micrometric struc- of biogeosciences during the last decades. On the one hand tures only revealed by micro analytical techniques. Under- they represent important proxy archives (e.g. oxygen isotopic standing to what extent and how organisms can control the composition can be used for temperature reconstruction (Mc- formation of these structures requires that the mineral and Crea, 1950; Urey et al., 1951)) and on the other hand they are organic phases can be identified and their spatial distribution affected by the increasing acidification of the ocean due to related. -
Polymorphic Protective Dps–DNA Co-Crystals by Cryo Electron Tomography and Small Angle X-Ray Scattering
biomolecules Article Polymorphic Protective Dps–DNA Co-Crystals by Cryo Electron Tomography and Small Angle X-Ray Scattering Roman Kamyshinsky 1,2,3,* , Yury Chesnokov 1,2 , Liubov Dadinova 2, Andrey Mozhaev 2,4, Ivan Orlov 2, Maxim Petoukhov 2,5 , Anton Orekhov 1,2,3, Eleonora Shtykova 2 and Alexander Vasiliev 1,2,3 1 National Research Center “Kurchatov Institute”, Akademika Kurchatova pl., 1, 123182 Moscow, Russia; [email protected] (Y.C.); [email protected] (A.O.); [email protected] (A.V.) 2 Shubnikov Institute of Crystallography of Federal Scientific Research Centre “Crystallography and Photonics” of Russian Academy of Sciences, Leninskiy prospect, 59, 119333 Moscow, Russia; [email protected] (L.D.); [email protected] (A.M.); [email protected] (I.O.); [email protected] (M.P.); [email protected] (E.S.) 3 Moscow Institute of Physics and Technology, Institutsky lane 9, 141700 Dolgoprudny, Moscow Region, Russia 4 Shemyakin-Ovchinnikov Institute of bioorganic chemistry of Russian Academy of Sciences, Miklukho-Maklaya, 16/10, 117997 Moscow, Russia 5 Frumkin Institute of Physical Chemistry and Electrochemistry of Russian Academy of Sciences, Leninsky prospect, 31, 119071 Moscow, Russia * Correspondence: [email protected]; Tel.: +7-916-356-3963 Received: 6 November 2019; Accepted: 22 December 2019; Published: 26 December 2019 Abstract: Rapid increase of intracellular synthesis of specific histone-like Dps protein that binds DNA to protect the genome against deleterious factors leads to in cellulo crystallization—one of the most curious processes in the area of life science at the moment. However, the actual structure of the Dps–DNA co-crystals remained uncertain in the details for more than two decades. -
PROGRAMME ABSTRACTS AGM Papers
The Palaeontological Association 63rd Annual Meeting 15th–21st December 2019 University of Valencia, Spain PROGRAMME ABSTRACTS AGM papers Palaeontological Association 6 ANNUAL MEETING ANNUAL MEETING Palaeontological Association 1 The Palaeontological Association 63rd Annual Meeting 15th–21st December 2019 University of Valencia The programme and abstracts for the 63rd Annual Meeting of the Palaeontological Association are provided after the following information and summary of the meeting. An easy-to-navigate pocket guide to the Meeting is also available to delegates. Venue The Annual Meeting will take place in the faculties of Philosophy and Philology on the Blasco Ibañez Campus of the University of Valencia. The Symposium will take place in the Salon Actos Manuel Sanchis Guarner in the Faculty of Philology. The main meeting will take place in this and a nearby lecture theatre (Salon Actos, Faculty of Philosophy). There is a Metro stop just a few metres from the campus that connects with the centre of the city in 5-10 minutes (Line 3-Facultats). Alternatively, the campus is a 20-25 minute walk from the ‘old town’. Registration Registration will be possible before and during the Symposium at the entrance to the Salon Actos in the Faculty of Philosophy. During the main meeting the registration desk will continue to be available in the Faculty of Philosophy. Oral Presentations All speakers (apart from the symposium speakers) have been allocated 15 minutes. It is therefore expected that you prepare to speak for no more than 12 minutes to allow time for questions and switching between presenters. We have a number of parallel sessions in nearby lecture theatres so timing will be especially important. -
Magnesium Silicate on Chloroquine Phosphate, Against Plasmodium Berghei
Ajuvant effect of a Synthetic Aluminium – Magnesium Silicate on chloroquine phosphate, against Plasmodium berghei. * Ezeibe Maduike, Elendu – Eleke Nnenna, Okoroafor Obianuju and Ngene Augustine Department of Veterinary Medicine, University of Nigeria, Nsukka. *Corresponding authur [email protected] Abstract Effect of a synthetic Aluminium – Magnesium Silicate (AMS) on antiplasmodial activity of chloroquine was tested.Plasmodium berghei infected mice were treated with 7 mg/ kg, 5 mg / kg and 3 mg / kg chloroquine, respectively.Subgroups in each experiment were treated with chloroquine alone and with chloroquine in AMS.Parasitaemia (%) of the group treated with 7 mg / kg was higher than that of the control.At 5 mg / kg, chloroquine treatment reduced parasitaemia from 3.60 to 2.46 (P = ).Incorporating chloroquine in AMS improved its ability to reduce P.berghei parasitaemia at 5 mg /kg and at 3 mg / kg, from 2.46 0.21 to 1.57 0.25 (P = ) and from 3.82 0.06 to 2.12 0.08 (P = ). It also increased mortality of mice treated at 7 mg / kg from 20 to 80 % (P = ). Key words: Antiplasmodial resistance, chloroquine toxicity, Aluminium – Magnesium Silicate, chloroquine phosphate. Background. Nature Precedings : hdl:10101/npre.2012.6749.1 Posted 2 Jan 2012 Protozoan parasites of the genus plasmodium are causative agents of malaria1, 2. Malaria is a zoonotic disease , affecting man, zoo primates, avian species and rodents3,4. It has also been reported that when species of plasmodium which infect animals were passaged in human volunteers they produced malaria in man5. In humans, malaria is cause of between one to three million deaths in sub saharan Africa every year 6.Malaria is not only an effect of poverty it is also a cause of poverty7.To combat malaria, most countries in Africa spend upto 40 % of their public health budget on the disease annually8. -
Acteurs Et Mécanismes Des Bio-Transformations De L'arsenic, De
Acteurs et mécanismes des bio-transformations de l’arsenic, de l’antimoine et du thallium pour la mise en place d’éco-technologies appliquées à la gestion d’anciens sites miniers Elia Laroche To cite this version: Elia Laroche. Acteurs et mécanismes des bio-transformations de l’arsenic, de l’antimoine et du thallium pour la mise en place d’éco-technologies appliquées à la gestion d’anciens sites miniers. Sciences de la Terre. Université Montpellier, 2019. Français. NNT : 2019MONTG048. tel-02611018 HAL Id: tel-02611018 https://tel.archives-ouvertes.fr/tel-02611018 Submitted on 18 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE MONT PELLIER En Sciences de l’Eau École doctorale GAIA Unité de recherche Hydrosciences Montpellier UMR 5569 Unité de recherche GME (Géomicrobiologie et Monitoring Environnemental) du BRGM, Orléans Acteurs et mécanismes des bio-transformations de l’arsenic, de l’antimoine et du thallium pour la mise en place d’éco -technologies appliquées à la gestion d’anciens -
Biomineralization of Carbonates in Modern Microbial Sediments and Its Implications for CO₂ Sequestration
Scholars' Mine Doctoral Dissertations Student Theses and Dissertations Spring 2014 Biomineralization of carbonates in modern microbial sediments and its implications for CO₂ sequestration Varun Gnanaprian Paul Follow this and additional works at: https://scholarsmine.mst.edu/doctoral_dissertations Part of the Geology Commons, and the Geophysics and Seismology Commons Department: Geosciences and Geological and Petroleum Engineering Recommended Citation Paul, Varun Gnanaprian, "Biomineralization of carbonates in modern microbial sediments and its implications for CO₂ sequestration" (2014). Doctoral Dissertations. 2138. https://scholarsmine.mst.edu/doctoral_dissertations/2138 This thesis is brought to you by Scholars' Mine, a service of the Missouri S&T Library and Learning Resources. This work is protected by U. S. Copyright Law. Unauthorized use including reproduction for redistribution requires the permission of the copyright holder. For more information, please contact [email protected]. BIOMINERALIZATION OF CARBONATES IN MODERN MICROBIAL SEDIMENTS AND ITS IMPLICATIONS FOR CO2 SEQUESTRATION by VARUN GNANAPRIAN PAUL A DISSERTATION Presented to the Faculty of the Graduate School of the MISSOURI UNIVERSITY OF SCIENCE AND TECHNOLOGY In Partial Fulfillment of the Requirements for the Degree DOCTOR OF PHILOSOPHY in GEOLOGY AND GEOPHYSICS 2014 Approved by: David J. Wronkiewicz, Advisor Melanie R. Mormile, Co-Advisor Francisca Oboh-Ikuenobe Wan Yang Jamie S. Foster © 2014 Varun Gnanaprian Paul All Rights Reserved iii PUBLICATION DISSERTATION OPTION This dissertation is organized into four main sections. Section 1 (pages 1 to 17) introduces the two main research projects undertaken and states the hypotheses and objectives. Section 2 (pages 18 to 35) describes the sites, materials used and the experimental methodology that has been employed in all the projects. -
Bakterielle Diversität in Einer Wasserbehandlungsanlage Zur Reini- Gung Saurer Grubenwässer
Bakterielle Diversität in einer Wasserbehandlungsanlage zur Reini- gung saurer Grubenwässer E. Heinzel1, S. Hedrich1, G. Rätzel2, M. Wolf2, E. Janneck2, J. Seifert1, F. Glombitza2, M. Schlömann1 1AG Umweltmikrobiologie, IÖZ, TU Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, [email protected], 2Fa. G.E.O.S. Ingenieurgesellschaft mbH, Gewerbepark „Schwarze Kiefern“, 09633 Halsbrücke In einer Versuchsanlage zur Gewinnung von Eisenhydroxysulfaten durch biologische Oxidation von zweiwertigem Eisen wurde die Zusammensetzung der bakteriellen Lebensgemeinschaft mit moleku- largenetischen Methoden analysiert. Die 16S rDNA-Klonbank wurde von zwei Sequenztypen, denen 68 % der Klone zugeordnet werden konnten, dominiert. Ein Sequenztyp kann phylogenetisch in die Ordnung der Nitrosomonadales eingeordnet werden, zu deren Vertretern sowohl chemo-heterotrophe Bakterien als auch autotrophe Eisen und Ammonium oxidierende Bakterien gehören. Der zweite Se- quenztyp ist ähnlich zu „Ferrimicrobium acidiphilum“, einem heterotrophen Eisenoxidierer. The microbial community of a pilot plant for the production of iron hydroxysulfates by biological oxidation of ferrous iron was studied using molecular techniques. The 16S rDNA clone library was dominated by two sequence types, to which 68 % of all clones could be assigned. One sequence type is phylogenetically classified to the order of Nitrosomonadales. Both chemoheterotrophic bacteria and autotrophic iron or ammonium oxidizing bacteria belong to this order. The second sequence type is related to “Ferrimicrobium acidiphilum”, a heterotrophic iron oxidizing bacteria. 1 Einleitung und Projektziel die biologische Oxidationskapazität zu optimie- ren. Zur Gewährleistung einer konstanten Pro- Stark eisenhaltige und saure Bergbauwässer aus duktqualität muss die Oxidation sicher be- Tagebaufolgelandschaften bedingen einen erheb- herrscht und gesteuert werden können. Dies er- lichen Sanierungsaufwand. Die konventionelle fordert die Analyse der mikrobiellen Lebens- Reinigung dieser Wässer findet durch pH- gemeinschaft. -
Advances in Applied Microbiology, Voume 49 (Advances in Applied
ADVANCES IN Applied Microbiology VOLUME 49 ThisPageIntentionallyLeftBlank ADVANCES IN Applied Microbiology Edited by ALLEN I. LASKIN JOAN W. BENNETT Somerset, New Jersey New Orleans, Louisiana GEOFFREY M. GADD Dundee, United Kingdom VOLUME 49 San Diego New York Boston London Sydney Tokyo Toronto This book is printed on acid-free paper. ∞ Copyright C 2001 by ACADEMIC PRESS All Rights Reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the Publisher. The appearance of the code at the bottom of the first page of a chapter in this book indicates the Publisher’s consent that copies of the chapter may be made for personal or internal use of specific clients. This consent is given on the condition, however, that the copier pay the stated per copy fee through the Copyright Clearance Center, Inc. (222 Rosewood Drive, Danvers, Massachusetts 01923), for copying beyond that permitted by Sections 107 or 108 of the U.S. Copyright Law. This consent does not extend to other kinds of copying, such as copying for general distribution, for advertising or promotional purposes, for creating new collective works, or for resale. Copy fees for pre-2000 chapters are as shown on the title pages. If no fee code appears on the title page, the copy fee is the same as for current chapters. 0065-2164/01 $35.00 Academic Press A division of Harcourt, Inc. 525 B Street, Suite 1900, San Diego, California 92101-4495, USA http://www.academicpress.com Academic Press Harcourt Place, 32 Jamestown Road, London NW1 7BY, UK http://www.academicpress.com International Standard Serial Number: 0065-2164 International Standard Book Number: 0-12-002649-X PRINTED IN THE UNITED STATES OF AMERICA 010203040506MM987654321 CONTENTS Microbial Transformations of Explosives SUSAN J. -
Studies on Microbial Biodiversity of Acidophilic Heterotrophs in Acid Rock Drainage Samples of Eastern Himalaya
Studies on microbial biodiversity of acidophilic heterotrophs in Acid Rock Drainage samples of Eastern Himalaya THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN SCIENCE (BIOTECHNOLOGY) OF THE UNIVERSITY OF NORTH BENGAL Suparna CBiiowa( Microbial Biotechnology Laboratory Department of Biotechnology University of North Bengal 2011 'lTie onfy way offindi11f1 tlie Bmits oftlie possi6(e is 6y going 6eyontf tfiem into tlie impossi6fe. -l/.rtfiur C Cfar&e Ae/CNOWI.B'DQBMBN7S This is a solemn opportunity to express my veneration to the entire magnanimous fraternity to those who directly or indirectly have contributed or associated to this work and made it possible. No words or mere accolades are big enough to express my gratitude towards, the person who stood rock solid beside me during the entire tenure of my research career, yes he is my guide, my supervisor, my guardian Dr. Ranadhir Chakraborty. His guidance, continuous inspiration and boundless optimism encouraged me to pull the worl< and give it a meaningful conclusion. Not even a part of the work would have reached its culmination without him. I owe special thanks and gratitude to my teachers Mr. T. Gopalan and Mr. Balwinder Singh Bajwa, who seeded and cultured the scientific research aptitude within me. · Right from my first day in the Department o(Biot~chnology, I had the opportunity to gain some good advice and wisdom from my teachers Dr. Shilpi Ghosh and Dr. Dipanwita Saha. I express my sincere thanks to my teachers Prof. B.N. Chakraborty, Prof. P.K. Sarkar, Prof. A.P. Das, Prof. Usha Chakraborty, Prof. -
Microorganisms
microorganisms Article Comparative Proteomics Analysis Reveals New Features of the Oxidative Stress Response in the Polyextremophilic Bacterium Deinococcus radiodurans Lihua Gao, Zhengfu Zhou, Xiaonan Chen, Wei Zhang, Min Lin and Ming Chen * Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; [email protected] (L.G.); [email protected] (Z.Z.); [email protected] (X.C.); [email protected] (W.Z.); [email protected] (M.L.) * Correspondence: [email protected] Received: 20 February 2020; Accepted: 19 March 2020; Published: 23 March 2020 Abstract: Deinococcus radiodurans is known for its extreme resistance to ionizing radiation, oxidative stress, and other DNA-damaging agents. The robustness of this bacterium primarily originates from its strong oxidative resistance mechanisms. Hundreds of genes have been demonstrated to contribute to oxidative resistance in D. radiodurans; however, the antioxidant mechanisms have not been fully characterized. In this study, comparative proteomics analysis of D. radiodurans grown under normal and oxidative stress conditions was conducted using label-free quantitative proteomics. The abundances of 852 of 1700 proteins were found to significantly differ between the two groups. These differential proteins are mainly associated with translation, DNA repair and recombination, response to stresses, transcription, and cell wall organization. Highly upregulated expression was observed for ribosomal proteins such as RplB, Rpsl, RpsR, DNA damage response proteins (DdrA, DdrB), DNA repair proteins (RecN, RecA), and transcriptional regulators (members of TetR, AsnC, and GntR families, DdrI). The functional analysis of proteins in response to oxidative stress is discussed in detail. This study reveals the global protein expression profile of D. radiodurans in response to oxidative stress and provides new insights into the regulatory mechanism of oxidative resistance in D. -
Microbial Lithification in Marine Stromatolites and Hypersaline Mats
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Published in Trends in Microbiology 13,9 : 429-438, 2005, 1 which should be used for any reference to this work Microbial lithification in marine stromatolites and hypersaline mats Christophe Dupraz1 and Pieter T. Visscher2 1Institut de Ge´ ologie, Universite´ de Neuchaˆ tel, Rue Emile-Argand 11, CP 2, CH-2007 Neuchaˆ tel, Switzerland 2Center for Integrative Geosciences, Department of Marine Sciences, University of Connecticut, 1080 Shennecossett Road, Groton, Connecticut, 06340, USA Lithification in microbial ecosystems occurs when pre- crucial role in regulating sedimentation and global bio- cipitation of minerals outweighs dissolution. Although geochemical cycles. the formation of various minerals can result from After the decline of stromatolites in the late Proterozoic microbial metabolism, carbonate precipitation is pos- (ca. 543 million years before present), microbially induced sibly the most important process that impacts global and/or controlled precipitation continued throughout the carbon cycling. Recent investigations have produced geological record as an active and essential player in most models for stromatolite formation in open marine aquatic ecosystems [9,10]. Although less abundant than in environments and lithification in shallow hypersaline the Precambrian, microbial precipitation is observed in a lakes, which could be highly relevant for interpreting the multitude of semi-confined (physically or chemically)