Growth Factors in Central Nervous System Development and Tumorigenesis
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Manual: Pathdetect Reporter Cell Lines
PathDetect Reporter Cell Lines INSTRUCTION MANUAL Catalog #800050 (PathDetect HLR Cell Line) #800055 (HLR-Elk1 Cell Line) #800060 (HLR-CHOP Cell Line) #800065 (HLR-CREB Cell Line) Revision A BN #800050-12 For In Vitro Use Only 800050-12 LIMITED PRODUCT WARRANTY This warranty limits our liability to replacement of this product. No other warranties of any kind, express or implied, including without limitation, implied warranties of merchantability or fitness for a particular purpose, are provided by Agilent. Agilent shall have no liability for any direct, indirect, consequential, or incidental damages arising out of the use, the results of use, or the inability to use this product. ORDERING INFORMATION AND TECHNICAL SERVICES United States and Canada Agilent Technologies Stratagene Products Division 11011 North Torrey Pines Road La Jolla, CA 92037 Telephone (858) 373-6300 Order Toll Free (800) 424-5444 Technical Services (800) 894-1304 Internet [email protected] World Wide Web www.stratagene.com Europe Location Telephone Fax Technical Services Austria 0800 292 499 0800 292 496 0800 292 498 Belgium 00800 7000 7000 00800 7001 7001 00800 7400 7400 0800 15775 0800 15740 0800 15720 France 00800 7000 7000 00800 7001 7001 00800 7400 7400 0800 919 288 0800 919 287 0800 919 289 Germany 00800 7000 7000 00800 7001 7001 00800 7400 7400 0800 182 8232 0800 182 8231 0800 182 8234 Netherlands 00800 7000 7000 00800 7001 7001 00800 7400 7400 0800 023 0446 +31 (0)20 312 5700 0800 023 0448 Switzerland 00800 7000 7000 00800 7001 7001 00800 7400 7400 0800 563 080 0800 563 082 0800 563 081 United Kingdom 00800 7000 7000 00800 7001 7001 00800 7400 7400 0800 917 3282 0800 917 3283 0800 917 3281 All Other Countries Please contact your local distributor. -
Expression of Oncogenes ELK1 and ELK3 in Cancer
Review Article Annals of Colorectal Cancer Research Published: 11 Nov, 2019 Expression of Oncogenes ELK1 and ELK3 in Cancer Akhlaq Ahmad and Asif Hayat* College of Chemistry, Fuzhou University, China Abstract Cancer is the uncontrolled growth of abnormal cells anywhere in a body, ELK1 and ELK3 is a member of the Ets-domain transcription factor family and the TCF (Ternary Complex Factor) subfamily. Proteins in this subfamily regulate transcription when recruited by SRF (Serum Response Factor) to bind to serum response elements. ELK1 and ELK3 transcription factors are known as oncogenes. Both transcription factors are proliferated in a different of type of cancer. Herein, we summarized the expression of transcription factor ELK1 and ELK3 in cancer cells. Keywords: ETS; ELK1; ELK3; Transcription factor; Cancer Introduction The ETS, a transcription factor of E twenty-six family based on a dominant ETS amino acids that integrated with a ~10-basepair element arrange in highly mid core sequence 5′-GGA(A/T)-3′ [1-2]. The secular family alter enormous 28/29 members which has been assigned in human and mouse and similarly the family description are further sub-divided into nine sub-families according to their homology and domain factor [3]. More importantly, one of the subfamily members such as ELK (ETS-like) adequate an N-terminal ETS DNA-binding domain along with a B-box domain that transmit the response of serum factor upon the formation of ternary complex and therefore manifested as ternary complex factors [4]. Further the ELK sub-divided into Elk1, Elk3 (Net, Erp or Sap2) and Elk4 (Sap1) proteins [3,4], which simulated varied proportional of potential protein- protein interactions [4,5]. -
New Mechanism Based Approaches for Treating Prostate Cancer Rayna Rosati Wayne State University
Wayne State University Wayne State University Dissertations 1-1-2017 New Mechanism Based Approaches For Treating Prostate Cancer Rayna Rosati Wayne State University, Follow this and additional works at: https://digitalcommons.wayne.edu/oa_dissertations Part of the Oncology Commons Recommended Citation Rosati, Rayna, "New Mechanism Based Approaches For Treating Prostate Cancer" (2017). Wayne State University Dissertations. 1865. https://digitalcommons.wayne.edu/oa_dissertations/1865 This Open Access Dissertation is brought to you for free and open access by DigitalCommons@WayneState. It has been accepted for inclusion in Wayne State University Dissertations by an authorized administrator of DigitalCommons@WayneState. NEW MECHANISM BASED APPROACHES FOR TREATING PROSTATE CANCER by RAYNA C. ROSATI DISSERTATION Submitted to the Graduate School of Wayne State University, Detroit, Michigan in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY 2017 MAJOR: CANCER BIOLOGY Approved By: Advisor Date DEDICATION This dissertation is dedicated to my family, who made me who I am today with all of their love and support. To my grandmother, Lucy, who just recently lost her battle with lung cancer and who would send me newspaper clippings in the mail about new topics of prostate cancer research. To my siblings, who have always been my best friends. To my father, Daniel, who has been my greatest mentor in life. To my mother, Nanci, who has been there for me through everything and who gave me my creative bone. ii ACKNOWLEDGEMENTS First off, I would like to thank my mentor, Dr. Manohar Ratnam, whose enthusiasm for science is undeniable. Thank you for always being so optimistic and believing I could accomplish this very challenging project. -
Modulation of Transcriptional Activity in Brain Lower Grade Glioma by Alternative Splicing
A peer-reviewed version of this preprint was published in PeerJ on 14 May 2018. View the peer-reviewed version (peerj.com/articles/4686), which is the preferred citable publication unless you specifically need to cite this preprint. Li J, Wang Y, Meng X, Liang H. 2018. Modulation of transcriptional activity in brain lower grade glioma by alternative splicing. PeerJ 6:e4686 https://doi.org/10.7717/peerj.4686 Modulation of transcriptional activity in brain lower grade glioma by alternative splicing Jin Li 1 , Yang Wang 1 , Xianglian Meng 1 , Hong Liang Corresp. 1 1 College of Automation, Harbin Engineering University, Harbin, Heilongjiang, China Corresponding Author: Hong Liang Email address: [email protected] Proteins that modify the activity of transcription factor (TF), often called modulators, play a vital role in gene transcriptional regulation. Alternative splicing is a critical step of gene processing and it can modulate gene function by adding or removing certain protein domains, and therefore influences the activity of a protein. The objective of this study is to investigate the role of alternative splicing in modulating the transcriptional regulation in brain lower grade glioma (LGG), especially transcription factor ELK1, which is closely related to various diseases, including Alzheimer’s disease and down syndrome. Results showed that changes in the exon inclusion ratio of proteins APP and STK16 are associated with changes in the expression correlation between ELK1 and its targets. Meanwhile, the structural features of the two modulators are strongly associated with the pathological impact of exon inclusion. Our analysis suggests, protein in different splicing level could play different functions on transcription factors, hence induces multiple genes dysregulation. -
Investigating the Role of the ETS Transcription Factor ELK1 in Stem Cell Transcription
Investigating the role of the ETS transcription factor ELK1 in stem cell transcription A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Biology, Medicine and Health 2017 Ian E. Prise Division of Molecular & Cellular Function School of Biological Sciences I. Table of Contents II. List of Figures ...................................................................................................................................... 5 III. Abstract .............................................................................................................................................. 7 IV. Declaration ......................................................................................................................................... 8 V. Copyright Statement ........................................................................................................................... 8 VI. Experimental Contributions ............................................................................................................... 9 VII. Acknowledgments .......................................................................................................................... 10 1. Introduction ...................................................................................................................................... 12 1.I Pluripotency ................................................................................................................................. 12 1.II Chromatin -
MEKK1/JNK Signaling Stabilizes and Activates P53
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 10541–10546, September 1998 Biochemistry MEKK1/JNK signaling stabilizes and activates p53 SERGE Y. FUCHS*, VICTOR ADLER*, MATTHEW R. PINCUS†, AND ZE’EV RONAI*‡ *Ruttenberg Cancer Center, Mount Sinai School of Medicine, New York, NY 10029; and †Department of Pathology and Laboratory Medicine, Brooklyn Veterans Affairs Medical Center and State University of New York Health Science, Brooklyn, NY 11203 Communicated by H. A. Scheraga, Cornell University, Ithaca, NY, July 7, 1998 (received for review May 4, 1998) ABSTRACT Activation of the tumor suppressor p53 by damage is preserved in cells from severe combined immunode- stress and damage stimuli often correlates with induction of ficient mice (10–12), we examined the role of JNK in this stress kinases, Jun-NH2 kinase (JNK). As JNK association response. with p53 plays an important role in p53 stability, in the JNKs are a family of stress kinases induced by change in redox present study we have elucidated the relationship between the potential, heat shock, osmotic shock, UV irradiation, and inflam- JNK-signaling pathway and p53 stability and activity. Expres- matory cytokines (13–16). JNK activity requires mitogen- sion of a constitutively active form of JNKK upstream kinase, activated protein kinases kinase (MEKK) 1–4 which phosphor- mitogen-activated protein kinase kinase kinase (DMEKK1), ylates MKK4/7. MKK4/7, in turn, phosphorylates JNK on resi- increased the level of the exogenously transfected form of p53 dues 183 and 185 (17–20). Activated JNK phosphorylates its in p53 null (10.1) cells as well as of endogenous p53 in MCF7 substrates, c-Jun, ATF2, ELK1, and p53 (3, 13–14, 21). -
1 Loss of ELK1 Has Differential Effects on Age-Dependent Organ Fibrosis
bioRxiv preprint doi: https://doi.org/10.1101/755694; this version posted September 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Loss of ELK1 has differential effects on age-dependent organ fibrosis and integrin expression Running title Aged, ELK1 deficient mice develop fibrosis and altered integrin expression Jennifer T Cairns1, Anthony Habgood1, Rochelle C Edwards-Pritchard1, Chloe Wilkinson1, Iain D Stewart1, Jack Leslie2, Burns C Blaxall3, Katalin Susztak4, Siegfried Alberti5, Alfred Nordheim5, Fiona Oakley2, R Gisli Jenkins1, Amanda L Tatler1. 1 Division of Respiratory Medicine, University of Nottingham, Nottingham University Hospitals, City Campus, Nottingham, NG5 1PB, UK and Respiratory Research Unit, NIHR Biomedical Research Centre, Nottingham University Hospitals Nottingham, UK. 2 Newcastle Fibrosis Research Group, Institute of Cellular Medicine, Faculty of Medical Sciences, 4th Floor, William Leech Building, Newcastle University, Framlington Place, Newcastle upon Tyne, NE2 4HH, UK 3 Department of Precision Medicine and Pharmacogenetics, The Christ Hospital Health Network, Cincinnati, Ohio, USA 4 Renal Electrolyte and Hypertension Division, Department of Medicine, Department of Genetics, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, USA 5 Interfaculty Institute of Cell Biology, Tuebingen University, Germany and 6 Leibniz Institute on Aging (FLI), Jena, Germany 1 bioRxiv preprint doi: https://doi.org/10.1101/755694; this version posted September 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Targeting FGFR/PDGFR/VEGFR Impairs Tumor Growth, Angiogenesis, and Metastasis by Effects on Tumor Cells, Endothelial Cells, and Pericytes in Pancreatic Cancer
Published OnlineFirst September 1, 2011; DOI: 10.1158/1535-7163.MCT-11-0312 Molecular Cancer Preclinical Development Therapeutics Targeting FGFR/PDGFR/VEGFR Impairs Tumor Growth, Angiogenesis, and Metastasis by Effects on Tumor Cells, Endothelial Cells, and Pericytes in Pancreatic Cancer Johannes Taeger1, Christian Moser1, Claus Hellerbrand2, Maria E. Mycielska1, Gabriel Glockzin1, Hans J. Schlitt1, Edward K. Geissler1, Oliver Stoeltzing3, and Sven A. Lang1 Abstract Activation of receptor tyrosine kinases, such as fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), and VEGF receptor (VEGFR), has been implicated in tumor progression and metastasis in human pancreatic cancer. In this study, we investigated the effects of TKI258, a tyrosine kinase inhibitor to FGFR, PDGFR, and VEGFR on pancreatic cancer cell lines (HPAF-II, BxPC-3, MiaPaCa2, and L3.6pl), endothelial cells, and vascular smooth muscle cells (VSMC). Results showed that treatment with TKI258 impaired activation of signaling intermediates in pancreatic cancer cells, endothelial cells, and VSMCs, even upon stimulation with FGF-1, FGF-2, VEGF-A, and PDGF-B. Furthermore, blockade of FGFR/PDGFR/VEGFR reduced survivin expression and improved activity of gemcitabine in MiaPaCa2 pancreatic cancer cells. In addition, motility of cancer cells, endothelial cells, and VSMCs was reduced upon treatment with TKI258. In vivo, therapy with TKI258 led to dose-dependent inhibition of subcutaneous (HPAF-II) and orthotopic (L3.6pl) tumor growth. Immunohistochemical analysis revealed effects on tumor cell proliferation [bromodeoxyuridine (BrdUrd)] and tumor vascularization (CD31). Moreover, lymph node metastases were significantly reduced in the orthotopic tumor model when treatment was initiated early with TKI258 (30 mg/kg/d). -
Comparing Subtypes of Breast Cancer Using a Message-Passing Network
Dana-Farber Cancer Institute Comparing Subtypes of Breast Cancer Using a Kamrine Poels Message-Passing Network Outline ❖ Breast cancer and its molecular subtypes ❖ Passing Attributes between Networks for Data Assimilation (PANDA) ❖ Luminal A vs. Luminal B breast cancer ❖ Basal-like vs. Luminal B breast cancer Gene Sets ❖ Future goals Molecular Subtypes of Breast Cancer ❖ Four recognized molecular subtypes of breast cancer: ❖ Luminal A ❖ Luminal B ❖ Basal (also called Triple Negative BC) ❖ HER2-positive (ERBB2) ❖ 198 samples came from Bioconductor public website, data is Breast Cancer TRANSBIG ❖ Samples were separated according to molecular subtype using the Subtype Clustering Model[1] 71 samples were Luminal A, 60 samples were Luminal B, 45 samples were Basal-like breast cancer, and 22 samples were HER2+. Luminal A and Luminal B are distinguished by level of proliferation. PANDA Algorithm[2] ❖ Main objective of PANDA is to find agreement between data represented by multiple networks: ❖ Protein-protein interaction ❖ Gene-expression (co-regulation network) ❖ TF-gene interaction (regulatory network) TF-Motif Scan PP interaction0 Network0 Co-regulation0 Responsibility Availability PP interaction1 Network1 Co-regulation1 PANDA estimates the probability that an edge exists in a network and returns that estimate in terms of Z-score units ❖ Responsibility(Rij): information flowing from TF i to gene j TF-Motif Scan (t) (t) Pim Wmj PP interaction0 Network0 Co-regulation0 (t) m Rij = 2 P 2 P (t) + W (t) P (t)W (t) im mj − im mj s m m m Responsibility -
The Role of Signaling Pathways in the Development and Treatment of Hepatocellular Carcinoma
Oncogene (2010) 29, 4989–5005 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 www.nature.com/onc REVIEW The role of signaling pathways in the development and treatment of hepatocellular carcinoma S Whittaker1,2, R Marais3 and AX Zhu4 1Dana-Farber Cancer Institute, Boston, MA, USA; 2The Broad Institute, Cambridge, MA, USA; 3Institute of Cancer Research, London, UK and 4Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, MA, USA Hepatocellular carcinoma (HCC) is a highly prevalent, malignancy in adults (Pons-Renedo and Llovet, 2003). treatment-resistant malignancy with a multifaceted mole- For the vast majority of patients, HCC is a late cular pathogenesis. Current evidence indicates that during complication of chronic liver disease, and as such, is hepatocarcinogenesis, two main pathogenic mechanisms often associated with cirrhosis. The main risk factors for prevail: (1) cirrhosis associated with hepatic regeneration the development of HCC include infection with hepatitis after tissue damage caused by hepatitis infection, toxins B virus (HBV) or hepatitis C virus (HCV). Hepatitis (for example, alcohol or aflatoxin) or metabolic influ- infection is believed to be the main etiologic factor in ences, and (2) mutations occurring in single or multiple 480% of cases (Anzola, 2004). Other risk factors oncogenes or tumor suppressor genes. Both mechanisms include excessive alcohol consumption, nonalcoholic have been linked with alterations in several important steatohepatitis, autoimmune hepatitis, primary biliary cellular signaling pathways. These pathways are of cirrhosis, exposure to environmental carcinogens (parti- interest from a therapeutic perspective, because targeting cularly aflatoxin B) and the presence of various genetic them may help to reverse, delay or prevent tumorigenesis. -
A Dissertation Entitled the Androgen Receptor
A Dissertation entitled The Androgen Receptor as a Transcriptional Co-activator: Implications in the Growth and Progression of Prostate Cancer By Mesfin Gonit Submitted to the Graduate Faculty as partial fulfillment of the requirements for the PhD Degree in Biomedical science Dr. Manohar Ratnam, Committee Chair Dr. Lirim Shemshedini, Committee Member Dr. Robert Trumbly, Committee Member Dr. Edwin Sanchez, Committee Member Dr. Beata Lecka -Czernik, Committee Member Dr. Patricia R. Komuniecki, Dean College of Graduate Studies The University of Toledo August 2011 Copyright 2011, Mesfin Gonit This document is copyrighted material. Under copyright law, no parts of this document may be reproduced without the expressed permission of the author. An Abstract of The Androgen Receptor as a Transcriptional Co-activator: Implications in the Growth and Progression of Prostate Cancer By Mesfin Gonit As partial fulfillment of the requirements for the PhD Degree in Biomedical science The University of Toledo August 2011 Prostate cancer depends on the androgen receptor (AR) for growth and survival even in the absence of androgen. In the classical models of gene activation by AR, ligand activated AR signals through binding to the androgen response elements (AREs) in the target gene promoter/enhancer. In the present study the role of AREs in the androgen- independent transcriptional signaling was investigated using LP50 cells, derived from parental LNCaP cells through extended passage in vitro. LP50 cells reflected the signature gene overexpression profile of advanced clinical prostate tumors. The growth of LP50 cells was profoundly dependent on nuclear localized AR but was independent of androgen. Nevertheless, in these cells AR was unable to bind to AREs in the absence of androgen. -
Structural and Mechanistic Insights Into VEGF Receptor 3 Ligand Binding and Activation
Structural and mechanistic insights into VEGF receptor 3 ligand binding and activation Veli-Matti Leppänena,1, Denis Tvorogova,1, Kaisa Kiskob, Andrea E. Protab, Michael Jeltscha, Andrey Anisimova, Sandra Markovic-Muellerb, Edward Stuttfeldb,c, Kenneth N. Goldied, Kurt Ballmer-Hoferb, and Kari Alitaloa,2 aWihuri Research Institute and Translational Cancer Biology Program, Institute for Molecular Medicine Finland and Helsinki University Central Hospital, Biomedicum Helsinki, University of Helsinki, 00014 Helsinki, Finland; bLaboratory of Biomolecular Research, Paul Scherrer Institute, CH-5232 Villigen PSI, Switzerland; cStructural Biology and Biophysics, Biozentrum, University of Basel, CH-4056 Basel, Switzerland; and dCenter for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel, CH-4056 Basel, Switzerland Edited by Napoleone Ferrara, University of California at San Diego, La Jolla, CA, and approved June 26, 2013 (received for review January 23, 2013) Vascular endothelial growth factors (VEGFs) and their receptors binding, VEGFRs use predominantly D2, with D3 providing ad- (VEGFRs) are key drivers of blood and lymph vessel formation in ditional binding affinity (16–18). In addition, D1 is required for development, but also in several pathological processes. VEGF-C VEGFR-3 ligand binding, but the exact role of this domain re- signaling through VEGFR-3 promotes lymphangiogenesis, which is mains elusive (19, 20). VEGFRs and the closely related type III a clinically relevant target for treating lymphatic insufficiency and RTKs are activated by ligand-induced dimerization of the extra- for blocking tumor angiogenesis and metastasis. The extracellular cellular domain, followed by tyrosine autophosphorylation of the domain of VEGFRs consists of seven Ig homology domains; intracellular kinase domain to generate downstream signaling domains 1–3 (D1-3) are responsible for ligand binding, and the (21).