The Emergence of Bitter Crab Disease As an International Crustacean Health Issue J.F
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An Aerobic Eukaryotic Parasite with Functional Mitochondria That Likely
An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome Uwe John, Yameng Lu, Sylke Wohlrab, Marco Groth, Jan Janouškovec, Gurjeet Kohli, Felix Mark, Ulf Bickmeyer, Sarah Farhat, Marius Felder, et al. To cite this version: Uwe John, Yameng Lu, Sylke Wohlrab, Marco Groth, Jan Janouškovec, et al.. An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome. Science Advances , American Association for the Advancement of Science (AAAS), 2019, 5 (4), pp.eaav1110. 10.1126/sci- adv.aav1110. hal-02372304 HAL Id: hal-02372304 https://hal.archives-ouvertes.fr/hal-02372304 Submitted on 25 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. SCIENCE ADVANCES | RESEARCH ARTICLE EVOLUTIONARY BIOLOGY Copyright © 2019 The Authors, some rights reserved; An aerobic eukaryotic parasite with functional exclusive licensee American Association mitochondria that likely lacks a mitochondrial genome for the Advancement Uwe John1,2*, Yameng Lu1,3, Sylke Wohlrab1,2, Marco Groth4, Jan Janouškovec5, Gurjeet S. Kohli1,6, of Science. No claim to 1 1 7 4 1,8 original U.S. Government Felix C. Mark , Ulf Bickmeyer , Sarah Farhat , Marius Felder , Stephan Frickenhaus , Works. -
Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Parasitic Dinoflagellate Hematodinium Perezi Prevalence in Larval and Juvenile Blue Crabs Callinectes Sapidus from Coastal Bays of Virginia
W&M ScholarWorks VIMS Articles Virginia Institute of Marine Science 6-6-2019 Parasitic dinoflagellate Hematodinium perezi prevalence in larval and juvenile blue crabs Callinectes sapidus from coastal bays of Virginia HJ Small Virginia Institute of Marine Science JP Huchin-Mian Virginia Institute of Marine Science KS Reece Virginia Institute of Marine Science KM Pagenkopp Lohan MJ Butler IV See next page for additional authors Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Marine Biology Commons, and the Parasitology Commons Recommended Citation Small, HJ; Huchin-Mian, JP; Reece, KS; Pagenkopp Lohan, KM; Butler, MJ IV; and Shields, JD, Parasitic dinoflagellate Hematodinium perezi prevalence in larval and juvenile blue crabs Callinectes sapidus from coastal bays of Virginia (2019). Diseases of Aquatic Organisms, 134, 215-222. 10.3354/dao03371 This Article is brought to you for free and open access by the Virginia Institute of Marine Science at W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Authors HJ Small, JP Huchin-Mian, KS Reece, KM Pagenkopp Lohan, MJ Butler IV, and JD Shields This article is available at W&M ScholarWorks: https://scholarworks.wm.edu/vimsarticles/1428 Vol. 134: 215–222, 2019 DISEASES OF AQUATIC ORGANISMS Published online June 6 https://doi.org/10.3354/dao03371 Dis Aquat Org OPENPEN ACCESSCCESS Parasitic dinoflagellate Hematodinium perezi prevalence in larval and juvenile blue crabs Callinectes sapidus from coastal bays of Virginia H. J. Small1,*, J. P. Huchin-Mian1,3, K. -
Evidence for Sperm Limitation in the Blue Crab, Callinectes Sapidus
W&M ScholarWorks VIMS Articles Virginia Institute of Marine Science 3-2003 Evidence for sperm limitation in the blue crab, Callinectes sapidus AH Hines PR Jivoff PJ Bushmann J van Montfrans Virginia Institute of Marine Science et al Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Marine Biology Commons Recommended Citation Hines, AH; Jivoff, PR; Bushmann, PJ; van Montfrans, J; and al, et, Evidence for sperm limitation in the blue crab, Callinectes sapidus (2003). Bulletin of Marine Science, 72(2), 287-310. https://scholarworks.wm.edu/vimsarticles/1521 This Article is brought to you for free and open access by the Virginia Institute of Marine Science at W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. BULLETIN OF MARINE SCIENCE, 72(2): 287±310, 2003 EVIDENCE FOR SPERM LIMITATION IN THE BLUE CRAB, CALLINECTES SAPIDUS Anson H. Hines, Paul R. Jivoff, Paul J. Bushmann, Jacques van Montfrans, Sherry A. Reed, Donna L. Wolcott and Thomas G. Wolcott ABSTRACT Reproductive success of female blue crabs may be limited by the amount of sperm received during the female's single, lifetime mating. Sperm must be stored in seminal receptacles until eggs are produced and fertilized months to years after mating. Further, intense ®shing pressure impacts male abundance, male size and population sex ratio, which affect ejaculate quantity. We measured temporal variation in seminal receptacle contents in relation to brood production for two stocks differing in both ®shing pressure on males and latitudinal effects on repro- ductive season: Chesapeake Bay, Maryland and Virginia, experienced intensive ®shing and relatively short reproductive season; and the Indian River Lagoon, Florida, experienced lower exploitation and longer reproductive season. -
The Mitochondrial Genome and Transcriptome of the Basal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE GBEprovided by PubMed Central The Mitochondrial Genome and Transcriptome of the Basal Dinoflagellate Hematodinium sp.: Character Evolution within the Highly Derived Mitochondrial Genomes of Dinoflagellates C. J. Jackson, S. G. Gornik, and R. F. Waller* School of Botany, University of Melbourne, Australia *Corresponding author: E-mail: [email protected]. Accepted: 12 November 2011 Abstract The sister phyla dinoflagellates and apicomplexans inherited a drastically reduced mitochondrial genome (mitochondrial DNA, mtDNA) containing only three protein-coding (cob, cox1, and cox3) genes and two ribosomal RNA (rRNA) genes. In apicomplexans, single copies of these genes are encoded on the smallest known mtDNA chromosome (6 kb). In dinoflagellates, however, the genome has undergone further substantial modifications, including massive genome amplification and recombination resulting in multiple copies of each gene and gene fragments linked in numerous combinations. Furthermore, protein-encoding genes have lost standard stop codons, trans-splicing of messenger RNAs (mRNAs) is required to generate complete cox3 transcripts, and extensive RNA editing recodes most genes. From taxa investigated to date, it is unclear when many of these unusual dinoflagellate mtDNA characters evolved. To address this question, we investigated the mitochondrial genome and transcriptome character states of the deep branching dinoflagellate Hematodinium sp. Genomic data show that like later-branching dinoflagellates Hematodinium sp. also contains an inflated, heavily recombined genome of multicopy genes and gene fragments. Although stop codons are also lacking for cox1 and cob, cox3 still encodes a conventional stop codon. Extensive editing of mRNAs also occurs in Hematodinium sp. -
First Record of the Larvae of Tanner Crab Chionoecetes Bairdi in the Chukchi Sea: a Future Northward Expansion in the Title Arctic?
First record of the larvae of tanner crab Chionoecetes bairdi in the Chukchi Sea: A future northward expansion in the Title Arctic? Author(s) Landeira, Jose M.; Matsuno, Kohei; Tanaka, Yuji; Yamaguchi, Atsushi Polar Science, 16, 86-89 Citation https://doi.org/10.1016/j.polar.2018.02.002 Issue Date 2018-06 Doc URL http://hdl.handle.net/2115/78322 © 2018, Elsevier. This manuscript version is made available under the CC-BY-NC-ND 4.0 license Rights https://creativecommons.org/licenses/by-nc-nd/4.0/ Rights(URL) https://creativecommons.org/licenses/by-nc-nd/4.0/ Type article (author version) File Information Polar Science 16_86-89.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP 1 First record of the larvae of tanner crab Chionoecetes bairdi in the Chukchi Sea: a 2 future northward expansion in the Arctic? 3 Jose M. Landeiraa, *, Kohei Matsunob, Yuji Tanakaa, Atsushi Yamaguchib, c 4 aDepartment of Ocean Sciences, Tokyo University of Marine Science and Technology, 5 4-5-7 Konan, Minato, Tokyo 108-8477, Japan. 6 bLaboratory of Marine Biology, Graduate School of Fisheries Science, Hokkaido 7 University, 3-1-1 Minatomachi, Hakodate, Hokkaido 041-8611, Japan. 8 cArctic Research Center, Hokkaido University, Kita-21 Nishi-11 Kita-ku, Sapporo, 9 Japan 001-0021, Japan 10 *Corresponding author: [email protected] 11 Keywords: Global warming, Fishery, Larval transport, Distribution, Connectivity. 12 Abstract 13 In the Bering Sea, warming and reduction of summer sea-ice cover are driving 14 species ranges towards the Arctic. Tanner crab, Chionoecetes bairdi, is a commercially 15 important species in the SE Bering Sea with a northerly range margin in 62ºN. -
First Record of the Larvae of Tanner Crab Chionoecetes Bairdi in the Chukchi T Sea: a Future Northward Expansion in the Arctic?
Polar Science 16 (2018) 86–89 Contents lists available at ScienceDirect Polar Science journal homepage: www.elsevier.com/locate/polar First record of the larvae of tanner crab Chionoecetes bairdi in the Chukchi T Sea: A future northward expansion in the Arctic? ∗ Jose M. Landeiraa, , Kohei Matsunob, Yuji Tanakaa, Atsushi Yamaguchib,c a Department of Ocean Sciences, Tokyo University of Marine Science and Technology, 4-5-7 Konan, Minato, Tokyo 108-8477, Japan b Laboratory of Marine Biology, Graduate School of Fisheries Science, Hokkaido University, 3-1-1 Minatomachi, Hakodate, Hokkaido 041-8611, Japan c Arctic Research Center, Hokkaido University, Kita-21 Nishi-11 Kita-ku, Sapporo, 001-0021, Japan ARTICLE INFO ABSTRACT Keywords: In the Bering Sea, warming and reduction of summer sea-ice cover are driving species ranges towards the Arctic. Global warming Tanner crab, Chionoecetes bairdi, is a commercially important species in the SE Bering Sea with a northerly range Fishery margin in 62ºN. In this paper, using plankton samples collected in the Pacific sub-Arctic/Arctic sector during Larval transport summer, we report for the first time the presence of larval stages (zoea II) of C. bairdi far from its northern limit Distribution of the distribution, in the south of St. Lawrence Island during 1991, and even crossing the Bering Strait into the Connectivity Chukchi Sea during 1992. We suggest that the long planktonic phase (3–5 months), in combination with the oceanographic circulation, may facilitate eventual long-distance transport. 1. Introduction the outer continental shelf of the Bering Sea, at depths > 100 m, and far north as 62ºN (Fig. -
<I>Hematodinium Perezi</I>
Old Dominion University ODU Digital Commons Biological Sciences Faculty Publications Biological Sciences 2019 Parasitic Dinoflagellate Hematodinium perezi Prevalence in Larval and Juvenile Blue Crabs Callinectes sapidus from Coastal Bays of Virginia H. J. Small J. P. Huchin-Mian K. S. Reece K. M. Pagenkopp Lohan Mark J. Butler IV Old Dominion University, [email protected] See next page for additional authors Follow this and additional works at: https://digitalcommons.odu.edu/biology_fac_pubs Part of the Biology Commons, Marine Biology Commons, and the Parasitology Commons Original Publication Citation Small, H. J., Huchin-Mian, J. P., Reece, K. S., Lohan, K. M. P., Butler, M. J., & Shields, J. D. (2019). Parasitic dinoflagellate Hematodinium perezi prevalence in larval and juvenile blue crabs Callinectes sapidus from coastal bays of Virginia. Diseases of Aquatic Organisms, 134(3), 215-222. doi:10.3354/dao03371 This Article is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Faculty Publications by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. Authors H. J. Small, J. P. Huchin-Mian, K. S. Reece, K. M. Pagenkopp Lohan, Mark J. Butler IV, and J. D. Shields This article is available at ODU Digital Commons: https://digitalcommons.odu.edu/biology_fac_pubs/391 Vol. 134: 215–222, 2019 DISEASES OF AQUATIC ORGANISMS Published online June 6 https://doi.org/10.3354/dao03371 Dis Aquat Org OPENPEN ACCESSCCESS Parasitic dinoflagellate Hematodinium perezi prevalence in larval and juvenile blue crabs Callinectes sapidus from coastal bays of Virginia H. -
ABSTRACT Dinoflagellate Parasites in the Hematodinium Genus Have
ABSTRACT Title of Document: DEVELOPMENT, VALIDATION AND APPLICATION OF A QUANTITATIVE POLYMERASE CHAIN REACTION ASSAY TO ASSESS ENVIRONMENTAL SAMPLES FOR HEMATODINIUM PEREZI PREVALENCE Ammar W. Hanif, MS, 2012 Directed By: Assistant Professor Eric J. Schott, Institute of Marine and Environmental Technology, University of Maryland Center of Environmental Science Associate Professor Rosemary Jagus, Co- advisor, Institute of Marine and Environmental Technology, University of Maryland Center of Environmental Science Dinoflagellate parasites in the Hematodinium genus have emerged as important pathogens of economically important crustaceans worldwide, causing significant economic losses to fisheries and aquaculture. An understanding of the routes of infection in blue crab (Callinectes sapidus) populations would be facilitated by an improved knowledge of environmental reservoirs. A previously used PCR assay, based on small subunit rRNA sequences, lacked the specificity needed for Hematodinium perezi detection of environmental samples. Therefore a quantitative PCR assay based on the internal transcribed spacer 2 (ITS2) region of H. perezi rRNA genes was developed, validated, and applied to examine temporal and spatial incidences of environmental reservoirs in Delmarva coastal bays. H. perezi was detected in sediment and water in several Delmarva coastal bays, as well as the host, C. sapidus. Results suggest the existence of localized sediment reservoirs in areas where hydrological and geophysical features allow for the formation of cell deposits. DEVELOPMENT, VALIDATION, AND APPLICATION OF A QUANTITATIVE POLYMERASE CHAIN REACTION ASSAY TO ASSESS HEMATODINIUM PEREZI PREVALENCE IN ENVIRONMENTAL SAMPLES By Ammar W. Hanif Thesis submitted to the Faculty of the Graduate School of the University of Maryland College Park, in partial fulfillment of the requirements for the degree of Master of Science 2012 Advisory committee: Professor Eric J. -
Chionoecetes Bairdi)
MARKETABILITY TESTING OF TANNER CRAB (CHIONOECETES BAIRDI) INFECTED WITH THE BITTER CRAB DINOFLAGELLATE (HEMATODINIUM SP) by Ken Imamura and Doug Woodby Regional Information Report1 No. 1J94-01 Alaska Department of Fish and Game Commercial Fisheries Management and Development Division P.O. Box 240020 Douglas, Alaska 99824-0020 January 1994 1 The Regional Information Report Series was established in 1987 to provide an information access system for all unpublished divisional reports. These reports frequently serve diverse ad hoc informational purposes or archive basic uninterpreted data. To accommodate timely reporting of recently collected information, reports in this series undergo only limited internal review and may contain preliminary data; this information may be subsequently finalized and published in the formal literature. Consequently, these reports should not be cited without prior approval of the author or the Commercial Fisheries Management and Development Division. AUTHORS Ken Imamura is Assistant Shellfish Biologist in Region I for the Alaska Department of Fish and Game, Division of Commercial Fisheries Management and Development, P.O. Box 240020, Douglas, AK 99824 Doug Woodby is the Region I Shellfish Biometrician for the Alaska Department of Fish and Game, Division of Commercial Fisheries Management and Development, P.O. Box 240020, Douglas, AK 99824 ACKNOWLEDGEMENTS The authors would like to thank the following people for their cooperation and assistance in the collection and analysis of the data presented in this document. -
Environmental DNA Metabarcoding for Simultaneous Monitoring and Ecological Assessment of Many Harmful Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.01.322941; this version posted October 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Environmental DNA Metabarcoding for Simultaneous Monitoring and Ecological Assessment of Many Harmful Algae Emily Jacobs-Palmer1, Ramón Gallego1,2, Kelly Cribari1, Abigail Keller1, Ryan P. Kelly1 1University of Washington School of Marine and Environmental Affairs 2NRC Research Associateship Program, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration. Abstract Harmful algae can have profound economic, environmental, and social consequences. As the timing, frequency, and severity of harmful algal blooms (HABs) change alongside global climate, efficient tools to monitor and understand the current ecological context of these taxa are increasingly important. Here we employ environmental DNA metabarcoding to identify patterns in a wide variety of harmful algae and associated ecological communities in the Hood Canal of Puget Sound in Washington State, USA. We track trends of presence and abundance in a series of water samples across nearly two years. We find putative harmful algal sequences in a majority of samples, suggesting that these groups are routinely present in local waters. We report patterns in variants of the economically important genus Pseudo-nitzschia (family Bacillariaceae), as well as multiple harmful algal taxa previously unknown or poorly documented in the region, including a cold-water variant from the saxitoxin-producing genus Alexandrium (family Gonyaulacaceae), two variants from the karlotoxin-producing genus Karlodinium (family Kareniaceae), and one variant from the parasitic genus Hematodinium (family Syndiniaceae). -
Potential Impacts to Snow Crab (Chionoecetes Opilio) in Warming Waters of the Bering Sea and Possible Management Solutions
Potential Impacts to Snow Crab (Chionoecetes opilio) in Warming Waters of the Bering Sea and Possible Management Solutions Captain: Zoey Kriegmont Laurie Balstad Sienna Hanna Tomás Mesa-Mueller McLain Sidmore Team: Get Nauti Juneau-Douglas High School 10014 Crazy Horse Drive Juneau, AK 99801 Primary Contact: Zoey Kriegmont [email protected] Coaches: Megan Behnke & Katharine Nalven [email protected] [email protected] “This paper was written as part of the Alaska Ocean Sciences Bowl high school competition. The conclusions in this report are solely those of the student authors.” Abstract The climate of the Bering Sea is both extremely variable, and altering as result of climate change.Water temperatures are increasing and the ice sheets are melting causing great alterations to the ecosystem and the species living in the Bering Sea. One such species dependent on this volatile environment is the snow crab (Chionoecetes opilio), which represents one of the most valuable fisheries in Alaska. Management of this species has been extremely difficult due to complex migration patterns and often unstable populations. These have resulted in frequent crashes of the fishery that have proved detrimental to communities reliant on the species. The niche of the snow crab within the larger Bering Sea ecosystem, and its reliance on the volatile environmental conditions in the region will be explored as well as possible effects of warming temperatures on their movements and populations examined. In this paper, we consider the importance of the snow crab both to the Bering Sea and to the larger worldwide economy as well as explore different management plans that have been utilized worldwide and their comparative effectiveness.