SE Colorado Inventory Final Report
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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
Sturgeon Chub (Macrhybopsis Gelida): a Technical Conservation Assessment
Sturgeon Chub (Macrhybopsis gelida): A Technical Conservation Assessment Prepared for the USDA Forest Service, Rocky Mountain Region, Species Conservation Project August 31, 2004 Frank J. Rahel and Laura A. Thel Department of Zoology and Physiology University of Wyoming, Laramie, Wyoming 82071 Peer Review Administered by American Fisheries Society Rahel, F.J. and L.A. Thel. (2004, August 31). Sturgeon Chub (Macrhybopsis gelida): a technical conservation assessment. [Online]. USDA Forest Service, Rocky Mountain Region. Available: http://www.fs.fed.us/r2/ projects/scp/assessments/sturgeonchub.pdf [date of access]. ACKNOWLEDGEMENTS We thank biologists from Colorado, Kansas, Nebraska, South Dakota, and Wyoming, and from the national forests and national grasslands within Region 2 who provided information about sturgeon chub within their jurisdictions. We especially thank Gregory Hayward and Richard Vacirca of the USDA Forest Service for their review of this species assessment. Comments also were provided by two anonymous reviewers. David B. McDonald of the University of Wyoming provided the population demographic matrix analysis. AUTHORS’ BIOGRAPHIES Frank J. Rahel is a professor in the Department of Zoology and Physiology at the University of Wyoming where he teaches courses in fi sheries management, ichthyology, and conservation biology. His research interests are centered around fi sh ecology and the infl uence of anthropogenic disturbances on fi sh assemblages. Laura A. Thel is a graduate research assistant in the Department of Zoology and Physiology at the University of Wyoming with research interests involving stream ecology, hydrology, and landscape ecology, especially as these are related to the management of native fi shes. COVER PHOTO CREDIT Sturgeon Chub (Macrhybopsis gelida). -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Literature Cited
Literature Cited Robert W. Kiger, Editor This is a consolidated list of all works cited in volumes 19, 20, and 21, whether as selected references, in text, or in nomenclatural contexts. In citations of articles, both here and in the taxonomic treatments, and also in nomenclatural citations, the titles of serials are rendered in the forms recommended in G. D. R. Bridson and E. R. Smith (1991). When those forms are abbre- viated, as most are, cross references to the corresponding full serial titles are interpolated here alphabetically by abbreviated form. In nomenclatural citations (only), book titles are rendered in the abbreviated forms recommended in F. A. Stafleu and R. S. Cowan (1976–1988) and F. A. Stafleu and E. A. Mennega (1992+). Here, those abbreviated forms are indicated parenthetically following the full citations of the corresponding works, and cross references to the full citations are interpolated in the list alphabetically by abbreviated form. Two or more works published in the same year by the same author or group of coauthors will be distinguished uniquely and consistently throughout all volumes of Flora of North America by lower-case letters (b, c, d, ...) suffixed to the date for the second and subsequent works in the set. The suffixes are assigned in order of editorial encounter and do not reflect chronological sequence of publication. The first work by any particular author or group from any given year carries the implicit date suffix “a”; thus, the sequence of explicit suffixes begins with “b”. Works missing from any suffixed sequence here are ones cited elsewhere in the Flora that are not pertinent in these volumes. -
Aquatic Fish Report
Aquatic Fish Report Acipenser fulvescens Lake St urgeon Class: Actinopterygii Order: Acipenseriformes Family: Acipenseridae Priority Score: 27 out of 100 Population Trend: Unknown Gobal Rank: G3G4 — Vulnerable (uncertain rank) State Rank: S2 — Imperiled in Arkansas Distribution Occurrence Records Ecoregions where the species occurs: Ozark Highlands Boston Mountains Ouachita Mountains Arkansas Valley South Central Plains Mississippi Alluvial Plain Mississippi Valley Loess Plains Acipenser fulvescens Lake Sturgeon 362 Aquatic Fish Report Ecobasins Mississippi River Alluvial Plain - Arkansas River Mississippi River Alluvial Plain - St. Francis River Mississippi River Alluvial Plain - White River Mississippi River Alluvial Plain (Lake Chicot) - Mississippi River Habitats Weight Natural Littoral: - Large Suitable Natural Pool: - Medium - Large Optimal Natural Shoal: - Medium - Large Obligate Problems Faced Threat: Biological alteration Source: Commercial harvest Threat: Biological alteration Source: Exotic species Threat: Biological alteration Source: Incidental take Threat: Habitat destruction Source: Channel alteration Threat: Hydrological alteration Source: Dam Data Gaps/Research Needs Continue to track incidental catches. Conservation Actions Importance Category Restore fish passage in dammed rivers. High Habitat Restoration/Improvement Restrict commercial harvest (Mississippi River High Population Management closed to harvest). Monitoring Strategies Monitor population distribution and abundance in large river faunal surveys in cooperation -
2009 Pinon Canyon Invertebrate Survey Report
"- - 70.096 60.096 50.096 40.096 30.096 20.096 10.096 0.0% Fig. 1 Most abundant Apiformes species calculated as a proportion of the total abundance of Apiformes in the collection period. Pinon Canyon Maneuver Site, 2008. 04% 1 j 0.391> 0.2% 0.1% 0.0% Fig. 2 Least abundant Apiformes species calculated as a proportion of the total abundance of Apiformes in the collection period. Pinon Canyon Maneuver Site, 2008.7 Fig. 3 Most abundant Carabidae species calculated as a proportion of the total abundance of Carabidae in the collection period. Pinon Canyon Maneuver Site, 2008. Fig. 4 Least abundant Carabidae species calculated as a proportion of the total abundance of Carabidae in the collection period. Pinon Canyon Maneuver Site, 2008. Fig. 5 Asilidae species abundance calculated as a proportion of the total abundace of Asilidae in the collection period. Pinon Canyon Maneuver Site, 2008. 30.0% 25.0% 20.0% 15.0% 10.0% 5.0% 0.0% Fig. 6 Butterfly species abundance calculated as a proportion of the total abundance of butterflies in the collection period. Pinon Canyon Maneuver Site, 2008. Fig. 7 Most abundant Orthoptera species calculated as a proportion of the total abundance of Orthoptera in the collection period. Pinon Canyon Maneuver Site, 2008. Fig. 8 Moderately abundant Orthoptera species calculated as a proportion of the total abundance of Orthoptera in the collection period. Pinon Canyon Maneuver Site, 2008. Fig. 9 Least abundant Orthoptera species calculated as a proportion of the total abundance of Orthoptera in the collection period. -
Polygonaceae of Alberta
AN ILLUSTRATED KEY TO THE POLYGONACEAE OF ALBERTA Compiled and writen by Lorna Allen & Linda Kershaw April 2019 © Linda J. Kershaw & Lorna Allen This key was compiled using informaton primarily from Moss (1983), Douglas et. al. (1999) and the Flora North America Associaton (2005). Taxonomy follows VAS- CAN (Brouillet, 2015). The main references are listed at the end of the key. Please let us know if there are ways in which the kay can be improved. The 2015 S-ranks of rare species (S1; S1S2; S2; S2S3; SU, according to ACIMS, 2015) are noted in superscript (S1;S2;SU) afer the species names. For more details go to the ACIMS web site. Similarly, exotc species are followed by a superscript X, XX if noxious and XXX if prohibited noxious (X; XX; XXX) according to the Alberta Weed Control Act (2016). POLYGONACEAE Buckwheat Family 1a Key to Genera 01a Dwarf annual plants 1-4(10) cm tall; leaves paired or nearly so; tepals 3(4); stamens (1)3(5) .............Koenigia islandica S2 01b Plants not as above; tepals 4-5; stamens 3-8 ..................................02 02a Plants large, exotic, perennial herbs spreading by creeping rootstocks; fowering stems erect, hollow, 0.5-2(3) m tall; fowers with both ♂ and ♀ parts ............................03 02b Plants smaller, native or exotic, perennial or annual herbs, with or without creeping rootstocks; fowering stems usually <1 m tall; fowers either ♂ or ♀ (unisexual) or with both ♂ and ♀ parts .......................04 3a 03a Flowering stems forming dense colonies and with distinct joints (like bamboo -
Vascular Plants and a Brief History of the Kiowa and Rita Blanca National Grasslands
United States Department of Agriculture Vascular Plants and a Brief Forest Service Rocky Mountain History of the Kiowa and Rita Research Station General Technical Report Blanca National Grasslands RMRS-GTR-233 December 2009 Donald L. Hazlett, Michael H. Schiebout, and Paulette L. Ford Hazlett, Donald L.; Schiebout, Michael H.; and Ford, Paulette L. 2009. Vascular plants and a brief history of the Kiowa and Rita Blanca National Grasslands. Gen. Tech. Rep. RMRS- GTR-233. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 44 p. Abstract Administered by the USDA Forest Service, the Kiowa and Rita Blanca National Grasslands occupy 230,000 acres of public land extending from northeastern New Mexico into the panhandles of Oklahoma and Texas. A mosaic of topographic features including canyons, plateaus, rolling grasslands and outcrops supports a diverse flora. Eight hundred twenty six (826) species of vascular plant species representing 81 plant families are known to occur on or near these public lands. This report includes a history of the area; ethnobotanical information; an introductory overview of the area including its climate, geology, vegetation, habitats, fauna, and ecological history; and a plant survey and information about the rare, poisonous, and exotic species from the area. A vascular plant checklist of 816 vascular plant taxa in the appendix includes scientific and common names, habitat types, and general distribution data for each species. This list is based on extensive plant collections and available herbarium collections. Authors Donald L. Hazlett is an ethnobotanist, Director of New World Plants and People consulting, and a research associate at the Denver Botanic Gardens, Denver, CO. -
Yukon Wild Buckwheat Eriogonum Flavum Var. Aquilinum
COSEWIC Assessment and Status Report on the Yukon Wild Buckwheat Eriogonum flavum var. aquilinum in Canada SPECIAL CONCERN 2017 COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: COSEWIC. 2017. COSEWIC assessment and status report on the Yukon Wild Buckwheat Eriogonum flavum var. aquilinum in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. x + 32 pp. (http://www.registrelep-sararegistry.gc.ca/default.asp?lang=en&n=24F7211B-1). Production note: COSEWIC would like to acknowledge Allan Harris and Robert Foster for writing the status report on Yukon Wild Buckwheat, Eriogonum flavum var. aquilinum, in Canada, prepared under contract with Environment and Climate Change Canada. This report was overseen and edited by Jana Vamosi, Co-chair of the COSEWIC Vascular Plants Specialist Subcommittee, with significant input from Bruce Bennett, former Co-chair of COSEWIC Vascular Plants and current COSEWIC Vascular Plants Specialist Subcommittee member. For additional copies contact: COSEWIC Secretariat c/o Canadian Wildlife Service Environment and Climate Change Canada Ottawa, ON K1A 0H3 Tel.: 819-938-4125 Fax: 819-938-3984 E-mail: [email protected] http://www.cosewic.gc.ca Également disponible en français sous le titre Ếvaluation et Rapport de situation du COSEPAC sur L’ériogone du Nord (Eriogonum flavum var. aquilinum) au Canada. Cover illustration/photo: Yukon Wild Buckwheat — Photo credit: Allan Harris. Her Majesty the Queen in Right of Canada, 2017. Catalogue No. CW69-14/758-2018E-PDF ISBN 978-0-660-26676-3 COSEWIC Assessment Summary Assessment Summary – November 2017 Common name Yukon Wild Buckwheat Scientific name Eriogonum flavum var. -
Vitales, C Nymphaeales Austrobaileyales
Amborellales Vitales, C Nymphaeales Austrobaileyales Acorales G Eenzaadlobbigen G Alismatales Vitales Petrosaviales Pandanales De Wijnstokfamilie (Vitaceae), d Dioscoreales vroeger samen met de Wegedoo Liliales geplaatst, omdat in beide famil Asparagales kroonbladen staan. Dat de Vital Arecales maar niet precies waar. Hiervoo G Commeliniden G Dasypogonales Poales Commelinales Crossosomatales Zingiberales Deze nieuwe orde in de Rosiden ordes en wordt ondersteund do Ceratophyllales kenmerken, zoals de structuur v Chloranthales afkomstig uit de Violales, Celast Het zijn 5 kleine families uit wa Canellales Piperales Aphloiaceae, Geissolomataceae G Magnoliiden G Magnoliales Stachyuraceae, en 2 iets grotere Laurales (Staphyleacea) en de Crossosom Ranunculales Sabiales Proteales Vitaceae Trochodendrales Buxales Aphloiacea Geissoloma Gunnerales Ixerbaceae Berberidopsidales Strasburge Dilleniales Staphyleac Caryophyllales Stachyurac Santalales Crossosom Saxifragales Melianthac G Geavanceerde tweezaadlobbigen G Vitales Francoacea Crossosomatales Ledocarpa Geraniales Vivianiacea Myrtales Geraniacea Zygophyllales Combretac Celastrales Lythraceae Malpighiales Onagracea G Fabiden G Oxalidales Vochysiace Fabales Myrtaceae G Rosiden G Rosales Crypteroni Cucurbitales Alzateacea Fagales Rhynchoca Oliniaceae Brassicales Penaeacea G G Malviden Malvales Melastoma Sapindales Cornales kenmerken. Uit de Polygalales z Ericales G Asteriden G erbij gevoegd, een kleine famili Garryales Afrika en Amerika. G Lamiiden G Gentianales De bladeren zijn meestal tegeno Solanales -
A POCKET GUIDE to Kansas Red Hills Wildflowers
A POCKET GUIDE TO Kansas Red Hills Wildflowers ■ ■ ■ ■ By Ken Brunson, Phyllis Scherich, Chris Berens, and Carl Jarboe Sponsored by Chickadee Checkoff, Westar Energy Green Team, The Nature Conservancy in Kansas, Kansas Grazing Lands Coalition and Comanche Pool Prairie Resource Foundation Published by the Friends of the Great Plains Nature Center Table of Contents • Introduction • 2 Blue/Purple ■ Oklahoma Phlox • 6 ■ Twist-flower • 7 ■ Blue Funnel-lily • 8 ■ Purple Poppy Mallow • 9 ■ Prairie Spiderwort • 10 ■ Purple Ground Cherry • 11 ■ Purple Locoweed • 12 ■ Stevens’ Nama • 13 ■ Woolly Locoweed • 14 Easter Daisy ■ Wedge-leaf Frog Fruit • 15 ©Phyllis Scherich ■ Silver-leaf Nightshade • 16 Cover Photo: Bush ■ Prairie Gentian • 17 Morning-glory ■ Woolly Verbena • 18 ©Phyllis Scherich ■ Stout Scorpion-weed • 19 Pink/Red ■ Rayless Gaillardia • 20 ■ Velvety Gaura • 21 ■ Western Indigo • 22 ■ Pincushion Cactus • 23 ■ Scarlet Gaura • 24 ■ Bush Morning-glory • 25 ■ Indian Blanket Flower • 26 ■ Clammy-weed • 27 ■ Goat’s Rue • 28 White/Cream Easter Daisy • 29 Old Plainsman • 30 White Aster • 31 Western Spotted Beebalm • 32 Lazy Daisy • 33 Prickly Poppy • 34 White Beardtongue • 35 Yucca • 36 White Flower Ipomopsis • 37 Stenosiphon • 38 White Milkwort • 39 Annual Eriogonum • 40 Devil’s Claw • 41 Ten-petal Mentzelia • 42 Yellow/Orange ■ Slender Fumewort • 43 ■ Bladderpod • 44 ■ Indian Blanket Stiffstem Flax • 45 Flower ■ Lemon Paintbrush • 46 ©Phyllis Scherich ■ Hartweg Evening Primrose • 47 ■ Prairie Coneflower • 48 ■ Rocky Mountain