Carcinus Maenas in South Africa: Status, Impacts and Management

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Carcinus Maenas in South Africa: Status, Impacts and Management Carcinus maenas in South Africa: status, impacts and management Clova Airth Mabin Dissertation presented for the degree of Doctor of Philosophy (Zoology) Department of Botany and Zoology Stellenbosch University Supervisor: Dr Tammy Robinson-Smythe Co-supervisors: Prof John Wilson Prof Jaco Le Roux March 2018 Stellenbosch University https://scholar.sun.ac.za Declaration By submitting this dissertation electronically, I declare that the entirety of the work contained therein is my own, original work, that I am the sole author thereof (save to the extent explicitly otherwise stated), that reproduction and publication thereof by Stellenbosch University will not infringe any third-party rights and that I have not previously in its entirety or in part submitted it for obtaining any qualification. I would like to declare that Dr Henning Winker at the Department of Agriculture, Forestry and Fisheries developed the code for the Bayesian depletion model used in Chapter 3. This allowed me to use the data collected during management of Carcinus to estimate the population’s response to the intervention. Throughout the thesis, the term Carcinus is used when referring to South African populations of crabs from this genus. This is a result of the detection of hybrids between C. maenas and C. aestuarii in Chapter 5, and the recognition that the results obtained in this thesis can thus not be ascribed to a particular Carcinus species. During the management programme, I played the role of lead scientist, co-ordinating the research and contributing to decisions regarding the management plan. During the course of my doctoral studies, I also completed the field work for and published the following paper: Mabin CA, Wilson JR, Robinson TB (2015) The Chilean black urchin, Tetrapygus niger (Molina, 1782) in South Africa: gone but not forgotten. BioInvasions Records 4: 261–264. Originally this work was to be incorporated into my thesis, with an envisaged management programme to control the urchin. However, when the surveys were conducted, no urchins were detected and the species was declared no longer present in South Africa. Clova Mabin January 2018 Copyright © 2018 Stellenbosch University All rights reserved i Stellenbosch University https://scholar.sun.ac.za ACKNOWLEDGEMENTS This project would not have been possible without funding from the South African Department of Environment Affairs (DEA) through the South African National Biodiversity Institute (SANBI) Marine Programme. I would also like to thank the DST- NRF Centre of Excellence for Invasion Biology for the generous personal bursary support. I will always be grateful for the support and care that my main supervisor, Dr Tammy Robinson-Smythe, put into my project as well as my own development as a student. She went out of her way to help, giving up a lot of her free time to help with field work as well as data analysis and the write-up. I couldn’t have done it without you! I would also like to thank my co-supervisors, Prof. John Wilson and Prof. Jaco Le Roux for their patience and guidance. I have learnt so many things from all three of you over the last few years. Due to the massive effort required to manage the crab, there are a lot of people who I would like to acknowledge. Specifically, the team at SANBI (Dr Kerry Sink, Prideel Madjeet, Siyansanga Miya and Phillip Ivey) for their logistical support, as well as the large team of research assistants, and the field managers (Dr Shannon Hampton, Hannah Raven and Nicolas Djikerman). For all other field work, I had a lot of helpers. I would like to specifically thank Cheruscha Swart, Lisa Skein, Katie Keanly, Dr Mhairi Alexander, Dr Shannon Hampton, Ben Brooker, Stewart Norman, Leslie Roberson and Jannes Landschoff for their help with surveys and tethering experiments. The support of the Research Dive Unit at the University of Cape Town (including Pieter Truter, Andrea Plos, Steve Horsley, Cassie van der Merwe, Renae Logston, Welly Qwabe, Jessica Micklem and Natalie Diemer) was invaluable. In particular, Pieter and Andrea were always happy to help with dive work and have an immense knowledge of field work practicalities. Thanks also to Pieter and Derek Robinson for the welding of crab trap frames. Special thanks are owed to the Royal Cape Yacht Club, the Hout Bay Yacht Club and the Two Oceans Aquarium for hosting my research. The aquarium accommodated the tethering experiment which really offered a different perspective on the role of Carcinus as prey. I am especially thankful to all those in the Molecular Ecology Lab who assisted me with laboratory techniques, especially Megan Mathese who was a tremendous help. Several international researchers assisted me in the collection of genetic samples, including Dr Ilaria Marino, Julie Gonzalez, Kiley Best, Dr Danny O’Neill, Dr Antony Knights, Prof. Henrique Queiroga, Brett Howard, Dr Masashi Yokota and Rene Campbell. Thank you all for your contributions. ii Stellenbosch University https://scholar.sun.ac.za I would like to thank Prof. Res Altwegg for providing guidance in the trigonometric analysis of the seasonal patterns detected in the Table Bay population. Dr Henning Winker helped develop the Bayesian state space model used in Chapter 3 and for that I’m very grateful. This project required significantly more computer science knowledge than I had at the beginning. A huge thanks to Dr Heidi Hirsch, Jan-Hendrik Keet, Maria Loreto- Castillo in the Department of Botany and Zoology, Stellenbosch University, as well as my non-academic friends, Davin Menhinick and Si Raybouldt. Thanks to all my friends who supported me throughout my PhD (there are too many to mention by name) and all those in the Marine Lab in Stellenbosch for feedback on presentations and general support. Above all, I would like to acknowledge the continued support of my parents throughout my long education, both for their financial contributions as well as their love and interest in my work (and assistance with data entries!). Thanks to my sister and her little family for loving crabs as much me, and for being brave enough to join in the crab-catching in Scotland. The biggest thanks are owed to my husband, Matthew Mabin, for supporting me on this prolonged journey, for helping me catch crabs on many occasions, supervising my diving, listening to plenty of crab talk, for allowing me to have a lot of crabs in our house (including the few that escaped!) and being on constant Skye duty. I can’t thank you enough! Then there is my wee girl who kept me going at the end with her giggles and smiles, and was my inspiration for finishing (before her first birthday). Skye, I dedicate this study to you. iii Stellenbosch University https://scholar.sun.ac.za Table of Contents DECLARATION ............................................................................................................................... I ACKNOWLEDGEMENTS ................................................................................................................ II ABSTRACT .................................................................................................................................. VII CHAPTER 1. GENERAL INTRODUCTION .......................................................................................... 1 MARINE INVASIONS ................................................................................................................................. 1 MARINE INVASIVE SPECIES MANAGEMENT ................................................................................................... 1 SOUTH AFRICAN MARINE INVASIONS .......................................................................................................... 3 THE ECOLOGY OF CARCINUS ...................................................................................................................... 3 CARCINUS INVASIONS ............................................................................................................................... 5 CARCINUS IN SOUTH AFRICA ..................................................................................................................... 6 RATIONALE FOR THIS STUDY ...................................................................................................................... 7 CHAPTER 2. THE CURRENT DISTRIBUTION AND POPULATION STATUS OF CARCINUS IN SOUTH AFRICA ........................................................................................................................................ 8 ABSTRACT .............................................................................................................................................. 8 INTRODUCTION ....................................................................................................................................... 8 METHODS ............................................................................................................................................ 12 Intertidal surveys .......................................................................................................................... 12 Subtidal surveys of natural habitat .............................................................................................. 12 Harbour surveys: population structure and reproductive cycle ................................................... 13 Data analysis ................................................................................................................................ 15 RESULTS .............................................................................................................................................
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