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The Fishing and Illegal Trade of the Angelshark DNA Barcoding
Fisheries Research 206 (2018) 193–197 Contents lists available at ScienceDirect Fisheries Research journal homepage: www.elsevier.com/locate/fishres The fishing and illegal trade of the angelshark: DNA barcoding against T misleading identifications ⁎ Ingrid Vasconcellos Bunholia, Bruno Lopes da Silva Ferrettea,b, , Juliana Beltramin De Biasia,b, Carolina de Oliveira Magalhãesa,b, Matheus Marcos Rotundoc, Claudio Oliveirab, Fausto Forestib, Fernando Fernandes Mendonçaa a Laboratório de Genética Pesqueira e Conservação (GenPesC), Instituto do Mar (IMar), Universidade Federal de São Paulo (UNIFESP), Santos, SP, 11070-102, Brazil b Laboratório de Biologia e Genética de Peixes (LBGP), Instituto de Biociências de Botucatu (IBB), Universidade Estadual Paulista (UNESP), Botucatu, SP, 18618-689, Brazil c Acervo Zoológico da Universidade Santa Cecília (AZUSC), Universidade Santa Cecília (Unisanta), Santos, SP, 11045-907, Brazil ARTICLE INFO ABSTRACT Handled by J Viñas Morphological identification in the field can be extremely difficult considering fragmentation of species for trade Keywords: or high similarity between congeneric species. In this context, the shark group belonging to the genus Squatina is Conservation composed of three species distributed in the southern part of the western Atlantic. These three species are Endangered species classified in the IUCN Red List as endangered, and they are currently protected under Brazilian law, which Fishing monitoring prohibits fishing and trade. Molecular genetic tools are now used for practical taxonomic identification, parti- Forensic genetics cularly in cases where morphological observation is prevented, e.g., during fish processing. Consequently, DNA fi Mislabeling identi cation barcoding was used in the present study to track potential crimes against the landing and trade of endangered species along the São Paulo coastline, in particular Squatina guggenheim (n = 75) and S. -
CEPHALOPODS 688 Cephalopods
click for previous page CEPHALOPODS 688 Cephalopods Introduction and GeneralINTRODUCTION Remarks AND GENERAL REMARKS by M.C. Dunning, M.D. Norman, and A.L. Reid iving cephalopods include nautiluses, bobtail and bottle squids, pygmy cuttlefishes, cuttlefishes, Lsquids, and octopuses. While they may not be as diverse a group as other molluscs or as the bony fishes in terms of number of species (about 600 cephalopod species described worldwide), they are very abundant and some reach large sizes. Hence they are of considerable ecological and commercial fisheries importance globally and in the Western Central Pacific. Remarks on MajorREMARKS Groups of CommercialON MAJOR Importance GROUPS OF COMMERCIAL IMPORTANCE Nautiluses (Family Nautilidae) Nautiluses are the only living cephalopods with an external shell throughout their life cycle. This shell is divided into chambers by a large number of septae and provides buoyancy to the animal. The animal is housed in the newest chamber. A muscular hood on the dorsal side helps close the aperture when the animal is withdrawn into the shell. Nautiluses have primitive eyes filled with seawater and without lenses. They have arms that are whip-like tentacles arranged in a double crown surrounding the mouth. Although they have no suckers on these arms, mucus associated with them is adherent. Nautiluses are restricted to deeper continental shelf and slope waters of the Indo-West Pacific and are caught by artisanal fishers using baited traps set on the bottom. The flesh is used for food and the shell for the souvenir trade. Specimens are also caught for live export for use in home aquaria and for research purposes. -
Review Articles Microparasites of Worldwide Mullets
Annals of Parasitology 2015, 61(4), 229–239 Copyright© 2015 Polish Parasitological Society doi: 10.17420/ap6104.12 Review articles Microparasites of worldwide mullets Mykola Ovcharenko 1,2 1Witold Stefański Institute of Parasitology, Polish Academy of Sciences, Twarda 51/55, 00-818 Warszawa, Poland 2Institute of Biology and Environment Protection, Pomeranian University, Arciszewskiego 22, 76-218 Słupsk, Poland; E-mail: [email protected] ABSTRACT. The present review is focus on parasitic organisms, previously considered as protozoans. Viral, prokaryotic and fungal parasites caused diseases and disorders of worldwide mullets were also observed. Most of the known viruses associated with a high mortality of mullets were detected in Mugil cephalus . Prokaryotic microparasites were registered in M. cephalus , Moolgarda cunnesiu , Liza ramada and Mugil liza . Fungal pathogens were associated with representatives of the genera Aphanomyces , Achlya , Phialemonium , Ichthyophonus . Ichthyophonus sp. can be considered as a potential threat for marine fish aquaculture, especially in culture conditions. A new hyperparasitic microsporidium like organism was recorded in myxozoan Myxobolus parvus infecting grey mullet Liza haematocheilus in the Russian coastal zone of the Sea of Japan. The protozoan representatives of the phyla Dinoflagellata, Euglenozoa, Ciliophora and Apicomplexa were reviewed and analyzed. The review of myxosporean parasites from grey mullets includes 64 species belonging to 13 genera and 9 families infecting 16 fish species Key words: worldwide mullets, microparasites, diseases and disorders Introduction importance of microparasites, infecting mullets based on existing data and original material Separation of microparasites from other obtained during parasitological investigations of parasites based mostly on epidemiological grounds mullets. The six-kingdom system of life, revised by [1,2]. -
Jubilee Field Draft EIA Chapter 4 6 Aug 09.Pdf
4 ENVIRONMENTAL AND SOCIO-ECONOMIC BASELINE 4.1 INTRODUCTION This chapter provides a description of the current environmental and socio- economic situation against which the potential impacts of the Jubilee Field Phase 1 development can be assessed and future changes monitored. The chapter presents an overview of the aspects of the environment relating to the surrounding area in which the Jubilee Field Phase 1 development will take place and which may be directly or indirectly affected by the proposed project. This includes the Jubilee Unit Area, the Ghana marine environment at a wider scale and the six districts of the Western Region bordering the marine environment. The Jubilee Unit Area and its regional setting are shown in Figure 4.1. The project area is approximately 132 km west-southwest of the city of Takoradi, 60 km from the nearest shoreline of Ghana, and 75 km from the nearest shoreline of Côte d’Ivoire. Figure 4.1 Project Location and Regional Setting ENVIRONMENTAL RESOURCES MANAGEMENT TULLOW GHANA LIMITED 4-1 The baseline description draws on a number of primary and secondary data sources. Primary data sources include recent hydrographic studies undertaken as part of the exploration well drilling programme in the Jubilee field area, as well as an Environmental Baseline Survey (EBS) which was commissioned by Tullow and undertaken by TDI Brooks (2008). An electronic copy of the EBS is attached to this EIS. It is noted that information on the offshore distribution and ecology of marine mammals, turtles and offshore pelagic fish is more limited due to limited historic research in offshore areas. -
Nocturnal Feeding of Pacific Hake and Jack Mackerel Off the Mouth of the Columbia River, 1998-2004: Implications for Juvenile Salmon Predation Robert L
This article was downloaded by: [Oregon State University] On: 16 August 2011, At: 13:01 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Transactions of the American Fisheries Society Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/utaf20 Nocturnal Feeding of Pacific Hake and Jack Mackerel off the Mouth of the Columbia River, 1998-2004: Implications for Juvenile Salmon Predation Robert L. Emmett a & Gregory K. Krutzikowsky b a Northwest Fisheries Science Center, NOAA Fisheries, 2030 South Marine Science Drive, Newport, Oregon, 97365, USA b Cooperative Institute of Marine Resource Studies, Oregon State University, 2030 South Marine Science Drive, Newport, Oregon, 97365, USA Available online: 09 Jan 2011 To cite this article: Robert L. Emmett & Gregory K. Krutzikowsky (2008): Nocturnal Feeding of Pacific Hake and Jack Mackerel off the Mouth of the Columbia River, 1998-2004: Implications for Juvenile Salmon Predation, Transactions of the American Fisheries Society, 137:3, 657-676 To link to this article: http://dx.doi.org/10.1577/T06-058.1 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.tandfonline.com/page/terms-and- conditions This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, re-distribution, re-selling, loan, sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. -
RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected]
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 6-25-2014 RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, and the Molecular Biology Commons Scholar Commons Citation Ulrich, Robert Michael, "RNA Detection Technology for Applications in Marine Science: Microbes to Fish" (2014). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/5321 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. RNA Detection Technology for Applications in Marine Science: Microbes to Fish by Robert M. Ulrich A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy College of Marine Science University of South Florida Major Professor: John H. Paul, Ph.D. Valerie J. Harwood, Ph.D. Mya Breitbart, Ph.D. Christopher D. Stallings, Ph.D. David E. John, Ph.D. Date of Approval June 25, 2014 Keywords: NASBA, grouper, Karenia mikimotoi, Enterococcus Copyright © 2014, Robert M. Ulrich DEDICATION This dissertation is dedicated to my fiancée, Dr. Shannon McQuaig for inspiring my return to graduate school and her continued support over the last four years. On no other porch in our little town have there been more impactful scientific discussions, nor more words of encouragement. ACKNOWLEDGMENTS I gratefully acknowledge the many people who have encouraged and advised me throughout my graduate studies. -
Odia: Dhudhiya Magara / Sorrah Magara / Haladia Magara
FISH AND SHELLFISH DIVERSITY AND ITS SUSTAINABLE MANAGEMENT IN CHILIKA LAKE V. R. Suresh, S. K. Mohanty, R. K. Manna, K. S. Bhatta M. Mukherjee, S. K. Karna, A. P. Sharma, B. K. Das A. K. Pattnaik, Susanta Nanda & S. Lenka 2018 ICAR- Central Inland Fisheries Research Institute Barrackpore, Kolkata - 700 120 (India) & Chilika Development Authority C- 11, BJB Nagar, Bhubaneswar- 751 014 (India) FISH AND SHELLFISH DIVERSITY AND ITS SUSTAINABLE MANAGEMENT IN CHILIKA LAKE V. R. Suresh, S. K. Mohanty, R. K. Manna, K. S. Bhatta, M. Mukherjee, S. K. Karna, A. P. Sharma, B. K. Das, A. K. Pattnaik, Susanta Nanda & S. Lenka Photo editing: Sujit Choudhury and Manavendra Roy ISBN: 978-81-938914-0-7 Citation: Suresh, et al. 2018. Fish and shellfish diversity and its sustainable management in Chilika lake, ICAR- Central Inland Fisheries Research Institute, Barrackpore, Kolkata and Chilika Development Authority, Bhubaneswar. 376p. Copyright: © 2018. ICAR-Central Inland Fisheries Research Institute (CIFRI), Barrackpore, Kolkata and Chilika Development Authority, C-11, BJB Nagar, Bhubaneswar. Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holders provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission from the copyright holders. Photo credits: Sujit Choudhury, Manavendra Roy, S. K. Mohanty, R. K. Manna, V. R. Suresh, S. K. Karna, M. Mukherjee and Abdul Rasid Published by: Chief Executive Chilika Development Authority C-11, BJB Nagar, Bhubaneswar-751 014 (Odisha) Cover design by: S. K. Mohanty Designed and printed by: S J Technotrade Pvt. -
Simulations of Fishing Effects on the Southern Benguela Fish Community Using an Individual-Based Model: Learning from a Comparison with Ecosim
Ecosystem Approaches to Fisheries in the Southern Benguela Afr. J. mar. Sci. 26: 95–114 2004 95 SIMULATIONS OF FISHING EFFECTS ON THE SOUTHERN BENGUELA FISH COMMUNITY USING AN INDIVIDUAL-BASED MODEL: LEARNING FROM A COMPARISON WITH ECOSIM Y-J. SHIN*, L. J. SHANNON† and P. M. CURY* By applying an individual-based model (OSMOSE) to the southern Benguela ecosystem, a multispecies analysis is proposed, complementary to that provided by the application of ECOPATH/ECOSIM models. To reconstruct marine foodwebs, OSMOSE is based on the hypothesis that predation is a size-structured process. In all, 12 fish species, chosen for their importance in terms of biomass and catches, are explicitly modelled. Growth, repro- duction and mortality parameters are required to model their dynamics and trophic interactions. Maps of mean spatial distribution of the species are compiled from published literature. Taking into account the spatial component is necessary because spatial co-occurrence determines potential interactions between predatory fish and prey fish of suitable size. To explore ecosystem effects of fishing, different fishing scenarios, previously examined using ECOSIM, are simulated using the OSMOSE model. They explore the effects of targeting fish species in the southern Benguela considered to be predators (Cape hake Merluccius capensis and M. paradoxus) or prey (anchovy Engraulis encrasicolus, sardine Sardinops sagax, round herring Etrumeus whiteheadi). Simulation results are compared and are generally consistent with those obtained using an ECOSIM model. This cross-validation appears to be a promising means of evaluating the robustness of model outputs, when separate validation of marine ecosystem models are still difficult to perform. -
Checklist of Serranid and Epinephelid Fishes (Perciformes: Serranidae & Epinephelidae) of India
Journal of the Ocean Science Foundation 2021, Volume 38 Checklist of serranid and epinephelid fishes (Perciformes: Serranidae & Epinephelidae) of India AKHILESH, K.V. 1, RAJAN, P.T. 2, VINEESH, N. 3, IDREESBABU, K.K. 4, BINEESH, K.K. 5, MUKTHA, M. 6, ANULEKSHMI, C. 1, MANJEBRAYAKATH, H. 7, GLADSTON, Y. 8 & NASHAD M. 9 1 ICAR-Central Marine Fisheries Research Institute, Mumbai Regional Station, Maharashtra, India. Corresponding author: [email protected]; Email: [email protected] 2 Andaman & Nicobar Regional Centre, Zoological Survey of India, Port Blair, India. Email: [email protected] 3 Department of Health & Family Welfare, Government of West Bengal, India. Email: [email protected] 4 Department of Science and Technology, U.T. of Lakshadweep, Kavaratti, India. Email: [email protected] 5 Southern Regional Centre, Zoological Survey of India, Chennai, Tamil Nadu, India. Email: [email protected] 6 ICAR-Central Marine Fisheries Research Institute, Visakhapatnam Regional Centre, Andhra Pradesh, India. Email: [email protected] 7 Centre for Marine Living Resources and Ecology, Kochi, Kerala, India. Email: [email protected] 8 ICAR-Central Island Agricultural Research Institute, Port Blair, Andaman and Nicobar Islands, India. Email: [email protected] 9 Fishery Survey of India, Port Blair, Andaman and Nicobar Islands, 744101, India. Email: [email protected] Abstract We provide an updated checklist of fishes of the families Serranidae and Epinephelidae reported or listed from India, along with photographs. A total of 120 fishes in this group are listed as occurring in India based on published literature, of which 25 require further confirmation and validation. We confirm here the presence of at least 95 species in 22 genera occurring in Indian marine waters. -
229 Index of Scientific and Vernacular Names
previous page 229 INDEX OF SCIENTIFIC AND VERNACULAR NAMES EXPLANATION OF THE SYSTEM Type faces used: Italics : Valid scientific names (genera and species) Italics : Synonyms * Italics : Misidentifications (preceded by an asterisk) ROMAN (saps) : Family names Roman : International (FAO) names of species 230 Page Page A African red snapper ................................................. 79 Abalistes stellatus ............................................... 42 African sawtail catshark ......................................... 144 Abámbolo ............................................................... 81 African sicklefìsh ...................................................... 62 Abámbolo de bajura ................................................ 81 African solenette .................................................... 111 Ablennes hians ..................................................... 44 African spadefish ..................................................... 63 Abuete cajeta ........................................................ 184 African spider shrimp ............................................. 175 Abuete de Angola ................................................. 184 African spoon-nose eel ............................................ 88 Abuete negro ........................................................ 184 African squid .......................................................... 199 Abuete real ........................................................... 183 African striped grunt ................................................ -
Fish, Various Invertebrates
Zambezi Basin Wetlands Volume II : Chapters 7 - 11 - Contents i Back to links page CONTENTS VOLUME II Technical Reviews Page CHAPTER 7 : FRESHWATER FISHES .............................. 393 7.1 Introduction .................................................................... 393 7.2 The origin and zoogeography of Zambezian fishes ....... 393 7.3 Ichthyological regions of the Zambezi .......................... 404 7.4 Threats to biodiversity ................................................... 416 7.5 Wetlands of special interest .......................................... 432 7.6 Conservation and future directions ............................... 440 7.7 References ..................................................................... 443 TABLE 7.2: The fishes of the Zambezi River system .............. 449 APPENDIX 7.1 : Zambezi Delta Survey .................................. 461 CHAPTER 8 : FRESHWATER MOLLUSCS ................... 487 8.1 Introduction ................................................................. 487 8.2 Literature review ......................................................... 488 8.3 The Zambezi River basin ............................................ 489 8.4 The Molluscan fauna .................................................. 491 8.5 Biogeography ............................................................... 508 8.6 Biomphalaria, Bulinis and Schistosomiasis ................ 515 8.7 Conservation ................................................................ 516 8.8 Further investigations ................................................. -
Carcinus Maenas in South Africa: Status, Impacts and Management
Carcinus maenas in South Africa: status, impacts and management Clova Airth Mabin Dissertation presented for the degree of Doctor of Philosophy (Zoology) Department of Botany and Zoology Stellenbosch University Supervisor: Dr Tammy Robinson-Smythe Co-supervisors: Prof John Wilson Prof Jaco Le Roux March 2018 Stellenbosch University https://scholar.sun.ac.za Declaration By submitting this dissertation electronically, I declare that the entirety of the work contained therein is my own, original work, that I am the sole author thereof (save to the extent explicitly otherwise stated), that reproduction and publication thereof by Stellenbosch University will not infringe any third-party rights and that I have not previously in its entirety or in part submitted it for obtaining any qualification. I would like to declare that Dr Henning Winker at the Department of Agriculture, Forestry and Fisheries developed the code for the Bayesian depletion model used in Chapter 3. This allowed me to use the data collected during management of Carcinus to estimate the population’s response to the intervention. Throughout the thesis, the term Carcinus is used when referring to South African populations of crabs from this genus. This is a result of the detection of hybrids between C. maenas and C. aestuarii in Chapter 5, and the recognition that the results obtained in this thesis can thus not be ascribed to a particular Carcinus species. During the management programme, I played the role of lead scientist, co-ordinating the research and contributing to decisions regarding the management plan. During the course of my doctoral studies, I also completed the field work for and published the following paper: Mabin CA, Wilson JR, Robinson TB (2015) The Chilean black urchin, Tetrapygus niger (Molina, 1782) in South Africa: gone but not forgotten.