Mutations in INF2 Are a Major Cause of Autosomal Dominant Focal Segmental Glomerulosclerosis

Total Page:16

File Type:pdf, Size:1020Kb

Mutations in INF2 Are a Major Cause of Autosomal Dominant Focal Segmental Glomerulosclerosis BRIEF COMMUNICATION www.jasn.org Mutations in INF2 Are a Major Cause of Autosomal Dominant Focal Segmental Glomerulosclerosis ʈ Olivia Boyer,*†‡§ Genevie`ve Benoit,* Olivier Gribouval,* Fabien Nevo,* Marie-Jose`phe Teˆte,* Jacques Dantal,¶ Brigitte Gilbert-Dussardier,** Guy Touchard,†† ʈʈ Alexandre Karras,‡‡‡ Claire Presne,§§ Jean-Pierre Grunfeld,‡ Christophe Legendre,‡¶¶ ʈʈ Dominique Joly,‡ Philippe Rieu,*** Nabil Mohsin,††† Thierry Hannedouche,‡‡‡ ʈʈʈ Vale´rie Moal,§§§ Marie-Claire Gubler,* Isabelle Broutin,‡ Ge´raldine Mollet,* and Corinne Antignac*‡§ BRIEF COMMUNICATIONS *INSERM U983, Hoˆpital Necker-Enfants Malades, Paris, France; †Service de Ne´phrologie Pe´diatrique and §De´partement de Ge´ne´ tique, Centre de Re´fe´ rence MARHEA, Hoˆpital Necker-Enfants Malades, Assistance Publique-Hoˆpitaux de Paris ʈ (APHP), Paris, France; ‡Universite´ Paris Descartes, Faculte´deMe´ decine Paris Descartes, Paris, France; Service de Ne´phrologie Pe´diatrique, CHU Sainte-Justine, Universite´ de Montre´al, Montre´al, Que´bec, Canada; ¶Service de Ne´phrologie et Immunologie Clinique, ITERT, CHU Hoˆtel Dieu, Nantes, France; **Service de Ge´ne´ tique Me´dicale and ††Service de Ne´phrologie, CHU La Mile´trie, Poitiers, France; ‡‡Service de Ne´phrologie, Hoˆpital Europe´en Georges Pompidou, APHP, Paris, France; §§Service de Ne´phrologie-Me´decine Interne, CHU d’Amiens, Hoˆpital Sud, Amiens, ʈʈ France; Service de Ne´phrologie and ¶¶Service de Transplantation Re´nale, Hoˆpital Necker-Enfants Malades, APHP, Paris, France; ***Service de Ne´phrologie, Hoˆpital du Kremlin-Biceˆtre, APHP, Le Kremlin-Biceˆtre, France; †††Department of Nephrology, Royal Hospital, Muscat, Oman; ‡‡‡AURAL et Service de Ne´phrologie, Hoˆpitaux Universitaires de Strasbourg, Strasbourg, France; §§§Centre de Ne´phrologie et de Transplantation Re´nale, Hoˆpital de la Conception, ʈʈʈ APHM, Marseille, France; and Laboratoire de Cristallographie et RMN Biologiques, CNRS, UMR, Paris, France ABSTRACT The recent identification of mutations in the INF2 gene, which encodes a member human genes highly expressed in podo- of the formin family of actin-regulating proteins, in cases of familial FSGS supports cytes have been identified to cause this the importance of an intact actin cytoskeleton in podocyte function. To determine entity2; these findings highlighted the better the prevalence of INF2 mutations in autosomal dominant FSGS, we crucial role of the podocyte in the glo- screened 54 families (78 patients) and detected mutations in 17% of them. All merular filtration barrier function. Al- mutations were missense variants localized to the N-terminal diaphanous inhibitory though an autosomal recessive inheri- domain of the protein, a region that interacts with the C-terminal diaphanous tance underlies most cases of inherited autoregulatory domain, thereby competing for actin monomer binding and inhib- FSGS occurring in childhood, a few iting depolymerization. Six of the seven distinct altered residues localized to an genes have been shown to be involved in INF2 region that corresponded to a subdomain of the mDia1 diaphanous inhibitory the rare autosomal dominant (AD) juve- domain reported to co-immunoprecipitate with IQ motif–containing GTPase-acti- nile and adult forms of the disease. In- vating protein 1 (IQGAP1). In addition, we evaluated 84 sporadic cases but de- deed, mutations in ACTN4, encoding tected a mutation in only one patient. In conclusion, mutations in INF2 are a major cause of autosomal dominant FSGS. Because IQGAP1 interacts with crucial podo- cyte proteins such as nephrin and PLC␧1, the identification of mutations that may Received May 19, 2010. Accepted August 30, 2010. alter the putative INF2–IQGAP1 interaction provides additional insight into the Published online ahead of print. Publication date pathophysiologic mechanisms linking formin proteins to podocyte dysfunction and available at www.jasn.org. FSGS. O.B., G.B., and O.G. contributed equally to this work and should be considered joint first authors. J Am Soc Nephrol 22: 239–245, 2011. doi: 10.1681/ASN.2010050518 Correspondence: Dr. Corinne Antignac, INSERM U983, Tour Lavoisier, 6e e´tage, Hoˆpital Necker-En- fants Malades, 149 rue de Se`vres, 75015 Paris, France. Phone: ϩ33-1-44-49-51-02; Fax: ϩ33-1-44- FSGS is a histologic pattern of injury of isolated proteinuria/nephrotic syn- 49-02-90; E-mail: [email protected] 1 leading to end-stage kidney disease drome. The recognition of familial Copyright © 2011 by the American Society of (ESKD) in approximately 40% of cases forms of FSGS has grown, and several Nephrology J Am Soc Nephrol 22: 239–245, 2011 ISSN : 1046-6673/2202-239 239 BRIEF COMMUNICATION www.jasn.org ␣-actinin 4, and TRPC6, encoding a suggested that INF2 may play a signifi- and ESKD. For example, in family A, car- member of the transient receptor poten- cant role in FSGS, this finding has not yet rying the p.L76P mutation, one member tial superfamily of ion channels, have been confirmed by others. In addition, required dialysis at the age of 28 years been identified in patients presenting the role of INF2 mutations among cases whereas another presented moderate pro- late-onset proteinuria with a slow pro- with a sporadic appearance has never teinuria without ESKD at the age of 79 gression to ESKD and may account for been evaluated. We therefore aimed to years. approximately 4 and 6% of familial determine the prevalence of INF2 muta- Given the occurrence of incomplete FSGS, respectively.3–7 Whereas the dis- tions in a cohort of 54 families (78 pa- penetrance in AD FSGS cases and the covery of TRPC6 unexpectedly sugges- tients) with a glomerular proteinuric dis- reports of neomutation in ACTN4-, ted the implication of calcium signaling order of apparent AD inheritance. These TRPC6-, and INF2-related FSGS,3,6,8 we in the pathogenesis of FSGS, the identifi- patients presented proteinuria at a me- undertook the search for INF2 muta- cation of ACTN4 emphasized the impor- dian age of 20.5 years (range 2 to 52 tions in 84 sporadic cases. The clinical tance of an intact podocyte actin cy- years), and FSGS was documented in at presentation of sporadic and familial toskeleton in kidney function. least one affected member in 80% of cases was similar. Only one already iden- Recently, Brown et al.8 found het- families (Table 1). tified mutation (p.R218Q) was detected erozygous mutations in the formin INF2 Seven missense INF2 mutations were in a single patient, who presented pro- gene segregating with FSGS in 11 (12%) found in nine families (28 patients), teinuria and FSGS lesions at 15 years of of 93 families with age at diagnosis and which translates to a detection rate of age. However, a complete renal evalua- ESKD varying from 11 to 72 years and 13 16.7% (Table 2). Median age at onset of tion and DNA samples were not available to 67 years, respectively. Formins are proteinuria among mutated patients was for his seemingly healthy parents, pre- widely expressed proteins governing sev- 27 years (compared with 15.5 years cluding the distinction between a de novo eral dynamic events that require remod- among familial cases without mutations; mutation and a familial case with low eling of the actin cytoskeleton such as cell P ϭ 0.026); proteinuria was isolated and penetrance and variable expressivity. polarity, cell and tissue morphogenesis, in the nephrotic range (at least tran- Among the seven mutations identi- and cytokinesis.9 To date, 15 mammalian siently) for most cases. Full-blown ne- fied in familial cases, four were novel formin genes have been identified, phrotic syndrome was noted in four pa- mutations. We detected the p.R218Q among which are the best studied diaph- tients. Median age at ESKD was 36 years and p.E220K in families from France, anous-related formins (DRF)—mDia1, (range 20 to 70 years). No significant sta- and these substitutions were also previ- mDia2, and mDia3—but also the in- tistical difference was observed regarding ously identified in families from the verted formins (INF). In the C-terminal the percentage of patients reaching United States (European ancestry).8 In half, DRF proteins contain the formin ESKD (P ϭ 0.085) and the age at onset of addition, we found the p.R177H and the homology domains FH1/FH2 and the ESKD (P ϭ 0.629) between familial cases p.R214C mutations each in two seem- diaphanous autoregulatory domain with or without mutations. FSGS was ingly nonrelated families (from France). (DAD) region, whereas the diaphanous documented in at least one affected We studied a possible founder effect by inhibitory domain (DID) is localized at member of each family with INF2 muta- haplotype analysis using six markers the N-terminal half. The FH2 domain di- tion. Mutations segregated with disease flanking the locus. No common ancestral rectly mediates actin assembly, and the in each respective family, although the disease-associated haplotype was found, FH1 domain accelerates, through profi- screening of seven additional at-risk suggesting no founder effect (data not lin-actin complexes, filament elonga- asymptomatic relatives (from three fam- shown). All these four single-base mu- tion. Interaction between DID and DAD ilies) revealed a mutation in two cases, tations involve a CpG dinucleotide, blocks the ability of the FH2 to interact confirming the incomplete penetrance of consistent with a chemical model of with actin, and this inhibition is relieved the disease (Supplemental Figure S1). In- mutation via methylation-mediated by the Rho GTPases.10 In contrast to deed, in family F carrying the p.R214C, deamination.13 Because this represents other formins, INF2-mediated polymer- one affected member presented protein- by far the most common single-base ization is not inhibited by the DID–DAD uria at 5 years of age whereas a relative substitution involved in human dis- interaction. In addition, INF2 has the was still free of renal manifestations at 26 ease,14 we can speculate that these mu- unique ability to accelerate depolymer- years of age.
Recommended publications
  • Snapshot: Formins Christian Baarlink, Dominique Brandt, and Robert Grosse University of Marburg, Marburg 35032, Germany
    SnapShot: Formins Christian Baarlink, Dominique Brandt, and Robert Grosse University of Marburg, Marburg 35032, Germany Formin Regulators Localization Cellular Function Disease Association DIAPH1/DIA1 RhoA, RhoC Cell cortex, Polarized cell migration, microtubule stabilization, Autosomal-dominant nonsyndromic deafness (DFNA1), myeloproliferative (mDia1) phagocytic cup, phagocytosis, axon elongation defects, defects in T lymphocyte traffi cking and proliferation, tumor cell mitotic spindle invasion, defects in natural killer lymphocyte function DIAPH2 Cdc42 Kinetochore Stable microtubule attachment to kinetochore for Premature ovarian failure (mDia3) chromosome alignment DIAPH3 Rif, Cdc42, Filopodia, Filopodia formation, removing the nucleus from Increased chromosomal deletion of gene locus in metastatic tumors (mDia2) Rac, RhoB, endosomes erythroblast, endosome motility, microtubule DIP* stabilization FMNL1 (FRLα) Cdc42 Cell cortex, Phagocytosis, T cell polarity Overexpression is linked to leukemia and non-Hodgkin lymphoma microtubule- organizing center FMNL2/FRL3/ RhoC ND Cell motility Upregulated in metastatic colorectal cancer, chromosomal deletion is FHOD2 associated with mental retardation FMNL3/FRL2 Constituently Stress fi bers ND ND active DAAM1 Dishevelled Cell cortex Planar cell polarity ND DAAM2 ND ND ND Overexpressed in schizophrenia patients Human (Mouse) FHOD1 ROCK Stress fi bers Cell motility FHOD3 ND Nestin, sarcomere Organizing sarcomeres in striated muscle cells Single-nucleotide polymorphisms associated with type 1 diabetes
    [Show full text]
  • Supplemental Figure Legends
    Supplemental Figure Legends: Supplemental Figure 1. Disruption of DIAPH1 gene expression and example of ingressions found in DIAPH1-deficient cultures. A) Western blot analysis of HaCaT cells transduced with non-targeting (NT) and DIAPH1-directed (Dia1) shRNA via lentivirus, cultured in low or high calcium media for 20hrs. Relative abundance indicated with respect to control samples. B) Western blot analysis of control cells (CTL) and those carrying a disrupted DIAPH1 locus (CRISPR) at two different passages. Relative abundance to controls is indicated. C) NGS analysis of genomic DNA flanking CRISPR-editing site and variant frequency. D) Example of DIAPH1-deficient tissue growth into the underlying collagen substrate. Hematoxylin and eosin stain of cross- sectioned, paraffin-embedded tissue fixed 10 days after raising to an air-liquid interface. Scale bar= 20 microns. Yellow arrow indicates basal keratinocyte layer. Red arrows indicate distinct ingressions. Supplemental Figure 2. Organotypic cultures treated with shRNA, ectopic mDia1 constructs and ancillary RNA-seq data. A) Hematoxylin and eosin (H&E) staining and keratin-10 (KRT10) staining of organotypic cultures transduced with control or Dia1- targeted shRNA. Counterstained with Hoechst for DNA. Dotted line indicates keratinocyte/collagen boundary. Scale bars = 20μm. B) Map of mDia1 construct introduced to CRISPR-edited Dia1 knockdown (Dia1KD) cells via lentivirus. Numerals are referenced in subsequent panels. FL= full length. C and D) Western blot analysis of ectopic constructs blotted with anti-DIAPH1 (C) or anti-Cherry (D). Residual Scarlet signal indicated by arrowhead. Irrelevant lanes of western blot lanes were dimmed for clarity. E) RNA-seq analysis of DIAPH1 transcripts in CRISPR-edited Dia1KD cells.
    [Show full text]
  • Wessex Regional Genetics Laboratory Publications for 2017
    Wessex Regional Genetics Laboratory Publications for 2017 Alikian M, Whale AS, Akiki S, Piechocki K, Torrado C, Myint T, Cowen S, Griffiths M, Reid AG, Apperley J, White H , Huggett JF, Foroni L. RT-qPCR and RT-Digital PCR: A comparison of different platforms for the evaluation of residual disease in chronic myeloid leukemia. Clin Chemistry 2017 63.2 :525-531. Butt NM, Lambert J, Ali S, Beer PA, Cross NCP , Duncombe A, Ewing J, Harrison CN, Knapper S, McLornan D, Mead AJ, R D, Bain BJ, on behalf of the British Committee for Standards in Haematology. Guideline for the investigation and management of eosinophilia. Br J Haemat 2017 176 : 553-572. Cooper R, Markham H, Theaker J, Bateman A, Bunyan D , Sommerlad M, Crawford G, Eccles D. Case Report: Primary clear cell microcystic adenoma of the sinonasal cavity: pathological or fortuitous association? Hindawi 2017 doi.org/10.1155/2017/9236780. Defour J-P, Hoade Y, Reuther A-M, Callaway A , Ward D , Chen F, Constantinescu SN, Cross ~NCP . An unusual, activating insertion/deletion MPL mutant in primary myelofibrosis. Leukemia 2017 Letters to the Editor 31 : 1838-1839. Ghazzawi M, Mehra V, Knut M, Brown L, Tapper W, Chase A , de Lavallade H, Cross NCP . A novel PCM1-PDGFRB fusion in a patient with a chronic myeloproliferative neoplasm and an ins(8;5). Acta Haematol 2017 138 :198-200. Giles FJ, Rea D, Rosti G, Cross NCP , Steegmann JL, Griskevicius L, le Coutre P, Coriu D, Petrov L, Ossenkoppele GJ, Mahon F-X, Saussele S, Hellmann A, Koskenvesa P, Brümmendorf TH, Gastl G, Castagnetti F, Vincenzi B, Haenig J, Hochhaus A.
    [Show full text]
  • DIAPH1 Mutation As a Novel Cause of Autosomal Dominant Macro Thrombocytopenia and Hearing Loss
    Open Access Annals of Hematology & Oncology Case Report DIAPH1 Mutation as a Novel Cause of Autosomal Dominant Macro Thrombocytopenia and Hearing Loss Karki R1*, Heilegiorgis Ajebo G2, Savage N3 and Kutlar A4 Abstract 1Division of Hematology and Oncology, Medstar Harbor Macrothrombocytopenia (MTP) is a group of rare disorders characterized by Hospital, USA giant platelets, thrombocytopenia and variably associated with abnormal bleeding. 2Division of Hematology and Oncology, Augusta Inherited MTP are frequently misdiagnosed as immune thrombocytopenia. University, USA Associated second organ manifestation can help narrow down syndromic MTPs. 3Department of Pathology, Augusta University, USA We describe a case of autosomal dominant sensorineural hearing loss and MTP 4Division of Hematology, Augusta University, USA caused by a gain of function mutation in DIAPH1. This mutation causes altered *Corresponding author: Nabin Raj Karki, Division megarkaryopoiesis and platelet cytoskeletal deregulation. Although hearing loss of Hematology and Oncology, Medstar Harbor Hospital, and MTP is likely progressive, clinically significant bleeding was not observed. 3001 S Hanover St, Baltimore, 20160, USA DIAPH1 related MTP can be distinguished clinically from MYH9 mutation by the absence of cataracts and glomerular disease. Received: December 18, 2019; Accepted: February 13, 2020; Published: February 20, 2020 Introduction Macrothrombocytopenia (MTP) is a heterogeneous group of rare disorders characterized by enlarged circulating platelets that are reduced in number and variably associated with abnormal bleeding. A vast majority of MTPs are acquired. Not uncommonly, inherited thrombocytopenia’s are wrongly diagnosed as immune thrombocytopenia’s and patient’s receive futile treatments. A careful search for associated secondary feature may help guide a workup to identify specific genetic aberration.
    [Show full text]
  • Anti-DIAPH1 Antibody (ARG55315)
    Product datasheet [email protected] ARG55315 Package: 100 μl anti-DIAPH1 antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes DIAPH1 Tested Reactivity Hu, Ms, Rat Tested Application IHC-P, WB Host Rabbit Clonality Polyclonal Isotype IgG Target Name DIAPH1 Antigen Species Human Immunogen Recombinant protein of Human DIAPH1 Conjugation Un-conjugated Alternate Names DRF1; Diaphanous-related formin-1; LFHL1; DFNA1; Protein diaphanous homolog 1; hDIA1; DIA1 Application Instructions Application table Application Dilution IHC-P 1:50 - 1:200 WB 1:500 - 1:2000 Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Positive Control Mouse lung and HepG2 Calculated Mw 141 kDa Properties Form Liquid Purification Affinity purification with immunogen. Buffer PBS (pH 7.3), 0.02% Sodium azide and 50% Glycerol Preservative 0.02% Sodium azide Stabilizer 50% Glycerol Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. Note For laboratory research only, not for drug, diagnostic or other use. www.arigobio.com 1/2 Bioinformation Database links GeneID: 1729 Human Swiss-port # O60610 Human Gene Symbol DIAPH1 Gene Full Name diaphanous-related formin 1 Background This gene is a homolog of the Drosophila diaphanous gene, and has been linked to autosomal dominant, fully penetrant, nonsyndromic sensorineural progressive low-frequency hearing loss.
    [Show full text]
  • Stritt, S., Nurden, P., Turro, E., Greene, D., Jansen, SB, Westbury
    Stritt, S., Nurden, P., Turro, E., Greene, D., Jansen, S. B., Westbury, S. K., Petersen, R., Astle, W. J., Marlin, S., Bariana, T. K., Kostadima, M., Lentaigne, C., Maiwald, S., Papadia, S., Kelly, A. M., Stephens, J. C., Penkett, C. J., Ashford, S., Tuna, S., ... Mumford, A. D. (2016). A gain-of-function variant in DIAPH1 causes dominant macrothrombocytopenia and hearing loss. Blood, 127(23), 2903-2914. https://doi.org/10.1182/blood-2015-10-675629 Peer reviewed version Link to published version (if available): 10.1182/blood-2015-10-675629 Link to publication record in Explore Bristol Research PDF-document This is the author accepted manuscript (AAM). The final published version (version of record) is available online via the American Society of Hematology at http://www.bloodjournal.org/content/127/23/2903. Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ A gain-of-function DIAPH1 variant causes dominant macrothrombocytopenia and hearing loss Running title: DIAPH1 and macrothrombocytopenia Authors: Simon Stritt1*, Paquita Nurden2,3*, Ernest Turro4-7,*, Daniel Greene4,6,7, Sjoert B Jansen4,5, Sarah K Westbury8, Romina Petersen4,5, William J Astle4-6, Sandrine Marlin9, Tadbir K Bariana10,11, Myrto Kostadima4,5, Claire Lentaigne12,13,
    [Show full text]
  • The Integrity of Cochlear Hair Cells Is Established and Maintained
    Ninoyu et al. Cell Death and Disease (2020) 11:536 https://doi.org/10.1038/s41419-020-02743-z Cell Death & Disease ARTICLE Open Access The integrity of cochlear hair cells is established and maintained through the localization of Dia1 at apical junctional complexes and stereocilia Yuzuru Ninoyu1,2, Hirofumi Sakaguchi2, Chen Lin1, Toshiaki Suzuki 1, Shigeru Hirano2,YasuoHisa2, Naoaki Saito1 and Takehiko Ueyama 1 Abstract Dia1, which belongs to the diaphanous-related formin family, influences a variety of cellular processes through straight actin elongation activity. Recently, novel DIA1 mutants such as p.R1213X (p.R1204X) and p.A265S, have been reported to cause an autosomal dominant sensorineural hearing loss (DFNA1). Additionally, active DIA1 mutants induce progressive hearing loss in a gain-of-function manner. However, the subcellular localization and pathological function of DIA1(R1213X/R1204X) remains unknown. In the present study, we demonstrated the localization of endogenous Dia1 and the constitutively active DIA1 mutant in the cochlea, using transgenic mice expressing FLAG-tagged DIA1 (R1204X) (DIA1-TG). Endogenous Dia1 and the DIA1 mutant were regionally expressed at the organ of Corti and the spiral ganglion from early life; alongside cochlear maturation, they became localized at the apical junctional complexes (AJCs) between hair cells (HCs) and supporting cells (SCs). To investigate HC vulnerability in the DIA1-TG mice, we exposed 4-week-old mice to moderate noise, which induced temporary threshold shifts with cochlear synaptopathy and ultrastructural changes in stereocilia 4 weeks post noise exposure. Furthermore, we established a knock-in (KI) fi 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; mouse line expressing AcGFP-tagged DIA1(R1213X) (DIA1-KI) and con rmed mutant localization at AJCs and the tips of stereocilia in HCs.
    [Show full text]
  • A Comprehensive Review on Inherited Sensorineural Hearing Loss and Their Syndromes
    Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 14 August 2020 doi:10.20944/preprints202008.0308.v1 Manuscript (Review Article) A comprehensive review on inherited Sensorineural Hearing Loss and their syndromes Authors Muhammad Noman 1, Shazia Anwer Bukhari 1, Muhammad Tahir 2, & Shehbaz Ali 3* Author’s information 1 Department of Biochemistry, Molecular Biology laboratory, Government College, University, Faisalabad, 38000, Pakistan. 2 Department of Oncology, Allied Teaching Hospital Faisalabad, Faisalabad Medical University, Faisalabad, 38000, Pakistan. 3 Department of Biosciences and Technology, Khwaja Fareed University of Engineering and information technology, Rahim Yar Khan, Punjab, Pakistan. *Correspondence: Shehbaz Ali: [email protected] Tel: +92-333-7477407 Abstract Hearing impairment is an immensely diagnosed genetic cause, 5% of the total world population effects with different kind of congenital hearing loss (HL). In third-world countries or countries where consanguineous marriages are more common the frequency rate of genetic disorders are at its zenith. Approximately, the incidence of hearing afflictions is ostensibly 7-8:1000 individuals whereas it is estimated that about 466 million peoples suffer with significant HL, and of theses deaf cases 34 million are children’s up to March, 2020. Several genes and colossal numbers of pathogenic variants cause hearing impairment, which aided in next-generation with recessive, dominant or X-linked inheritance traits. This review highlights on syndromic and non-syndromic HL (SHL and NSHL), and categorized as conductive, sensorineural and mixed HL, which having autosomal dominant and recessive, and X-linked or mitochondrial mode of inheritance. Many hundred genes involved in HL are reported, and their mutation spectrum becomes very wide.
    [Show full text]
  • A Novel Truncating Mutation in HOMER2 Causes Nonsyndromic Progressive DFNA68 Hearing Loss in a Spanish Family
    G C A T T A C G G C A T genes Article A Novel Truncating Mutation in HOMER2 Causes Nonsyndromic Progressive DFNA68 Hearing Loss in a Spanish Family María Lachgar 1,2,† , Matías Morín 1,2,† , Manuela Villamar 1,2, Ignacio del Castillo 1,2 and Miguel Ángel Moreno-Pelayo 1,2,* 1 Servicio de Genética, Hospital Universitario Ramón y Cajal, IRYCIS, Carretera de Colmenar km 9.100, 28034 Madrid, Spain; [email protected] (M.L.); [email protected] (M.M.); [email protected] (M.V.); [email protected] (I.d.C.) 2 Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), 28034 Madrid, Spain * Correspondence: [email protected] † These authors have contributed equally to this work. Abstract: Nonsyndromic hereditary hearing loss is a common sensory defect in humans that is clinically and genetically highly heterogeneous. So far, 122 genes have been associated with this disorder and 50 of them have been linked to autosomal dominant (DFNA) forms like DFNA68, a rare subtype of hearing impairment caused by disruption of a stereociliary scaffolding protein (HOMER2) that is essential for normal hearing in humans and mice. In this study, we report a novel HOMER2 variant (c.832_836delCCTCA) identified in a Spanish family by using a custom NGS targeted gene panel (OTO-NGS-v2). This frameshift mutation produces a premature stop codon that may lead in the absence of NMD to a shorter variant (p.Pro278Alafs*10) that truncates HOMER2 at the CDC42 binding domain (CBD) of the coiled-coil structure, a region that is essential Citation: Lachgar, M.; Morín, M.; for protein multimerization and HOMER2-CDC42 interaction.
    [Show full text]
  • Homozygous Loss of DIAPH1 Is a Novel Cause of Microcephaly in Humans
    European Journal of Human Genetics (2014), 1–8 & 2014 Macmillan Publishers Limited All rights reserved 1018-4813/14 www.nature.com/ejhg ARTICLE Homozygous loss of DIAPH1 is a novel cause of microcephaly in humans A Gulhan Ercan-Sencicek1,2, Samira Jambi3,16, Daniel Franjic4,16, Sayoko Nishimura1,2, Mingfeng Li4, Paul El-Fishawy1, Thomas M Morgan5, Stephan J Sanders6, Kaya Bilguvar2,7, Mohnish Suri8, Michele H Johnson9, Abha R Gupta1,10, Zafer Yuksel11, Shrikant Mane7,12, Elena Grigorenko1,13, Marina Picciotto1,4,14, Arthur S Alberts15, Murat Gunel2, Nenad Sˇestan4 and Matthew W State*,6 The combination of family-based linkage analysis with high-throughput sequencing is a powerful approach to identifying rare genetic variants that contribute to genetically heterogeneous syndromes. Using parametric multipoint linkage analysis and whole exome sequencing, we have identified a gene responsible for microcephaly (MCP), severe visual impairment, intellectual disability, and short stature through the mapping of a homozygous nonsense alteration in a multiply-affected consanguineous family. This gene, DIAPH1, encodes the mammalian Diaphanous-related formin (mDia1), a member of the diaphanous-related formin family of Rho effector proteins. Upon the activation of GTP-bound Rho, mDia1 generates linear actin filaments in the maintenance of polarity during adhesion, migration, and division in immune cells and neuroepithelial cells, and in driving tangential migration of cortical interneurons in the rodent. Here, we show that patients with a homozygous nonsense DIAPH1 alteration (p.Gln778*) have MCP as well as reduced height and weight. diap1 (mDia1 knockout (KO))-deficient mice have grossly normal body and brain size. However, our histological analysis of diap1 KO mouse coronal brain sections at early and postnatal stages shows unilateral ventricular enlargement, indicating that this mutant mouse shows both important similarities as well as differences with human pathology.
    [Show full text]
  • Genetics and Cytogenetics in Oncology and Haematology
    Atlas of Genetics and Cytogenetics in Oncology and Haematology OPEN ACCESS JOURNAL INIST-CNRS Leukaemia Section Short Communication Myeloid/lymphoid neoplasms with eosinophilia and rearrangement of PDGFRA, PDGFRB, or FGFR1, or with PCM1-JAK2: Overview 2019 Sheng Xiao Brigham and Women's Hospital, Boston, MA 02215; [email protected] Published in Atlas Database: July 2019 Online updated version : http://AtlasGeneticsOncology.org/Anomalies/PDGFRAPDGFRBFGFR1PCM1-JAK2ID1855.html Printable original version : http://documents.irevues.inist.fr/bitstream/handle/2042/70698/07-2019-PDGFRAPDGFRBFGFR1PCM1-JAK2ID1855.pdf DOI: 10.4267/2042/70698 This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France Licence. © 2020 Atlas of Genetics and Cytogenetics in Oncology and Haematology Abstract Disease (1) Myeloid/lymphoid neoplasms with PDGFRA Review on the group of myeloid/lymphoid rearrangement neoplasms with eosinophilia and rearrangement of (2) Myeloid/lymphoid neoplasms with PDGFRB PDGFRA, PDGFRB, or FGFR1, or with PCM1- rearrangement JAK2 defined by the WHO 2016. (3) Myeloid/lymphoid neoplasms with FGFR1 Keywords rearrangement eosinophilia; PDGFRA; PDGFRB; FGFR1, (4) Provisional entity: Myeloid/lymphoid neoplasms PCM1/JAK2 with PCM1/JAK2 Treatment Clinics and pathology This group of patients can be treated with tyrosine Disease kinase inhibitors. While patients with PDGFRA or PDGFRB rearrangement are highly sensitive to Eosinophilia is defined as a peripheral blood Imatinib, PCM1-JAK2 patients had varying 9 9 eosinophil count > 0.5x10 /L, with > 1.5x10 /L of responses to JAK2 inhibitor Ruxolitinib, which can eosinophil count sometimes referred to as induce complete remission, although the duration is hypereosinophlia. Eosinophilia is a common clinical often limited.
    [Show full text]
  • RHOA and Mdia1 Promotes Apoptosis of Breast Cancer Cells Via a High
    Open Life Sci. 2019; 14: 619–627 Research Article Peter Bober*, Michal Alexovič, Zuzana Tomková, Róbert Kilík, Ján Sabo RHOA and mDia1 promotes apoptosis of breast cancer cells via a high dose of doxorubicin treatment https://doi.org/10.1515/biol-2019-0070 Received March 8, 2019; accepted September 5, 2019 1 Introduction Abstract: Background: Transforming RhoA proteins Doxorubicin (DOX) is one of the most useful anticancer (RHOA) and their downstream Diaphanous homolog 1 agents. However, the use of higher DOX doses is limited by proteins (DIAPH1) or mDia1 participate in the regulation the cardiotoxicity [1, 2, 3]. DOX may intercalate into DNA of actin cytoskeleton which plays critical role in cells, i.e., and inhibits the progression of topoisomerase II, inducing morphologic changes and apoptosis. Methodology: To its cytotoxicity [4]. Under cytotoxic stress conditions, Rho determine the cell viability the real time cell analysis (RTCA) GTPase signalling cascade results in actin cytoskeleton and flow cytometry were used. To perform proteomic remodelling [5]. Rho family GTPases are therefore key analysis, the label-free quantitative method and post- regulators of the actin cytoskeletal dynamics [6]. It was also translation modification by the nano-HPLC and ESI-MS ion proved that DOX induces actin cytoskeleton alterations, trap mass analyser were used. Results: The results of the cell namely through Rho family RhoGTPase pathways [7]. viability showed an increase of dead cells (around 30 %) in The structural mechanisms of RHOA, RAC1 and CDC42 MCF-7/DOX-1 (i.e., 1μM of doxorubicin was added to MCF-7/ proteins are well documented, as are their regulatory WT breast cancer cell line) compared to MCF-7/WT (control) partners and post-translational modifications [8].
    [Show full text]