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USF Board of Trustees ( March 7, 2013)
Agenda item: (to be completed by Board staff) USF Board of Trustees ( March 7, 2013) Issue: Proposed Ph.D. in Integrative Biology ________________________________________________________________ Proposed action: New Degree Program Approval ________________________________________________________________ Background information: This application for a new Ph.D is driven by a recent reorganization of the Department of Biology. The reorganization began in 2006 and was completed in 2009. The reorganization of the Department of Biology, in part, reflected the enormity of the biological sciences, and in part, different research perspectives and directions taken by the faculty in each of the respective areas of biology. Part of the reorganization was to replace the original Ph.D. in Biology with two new doctoral degrees that better serve the needs of the State and our current graduate students by enabling greater focus of the research performed to earn the Ph.D. The well-established and highly productive faculty attracts students to the Tampa Campus from all over the United States as well as from foreign countries. The resources to support the two Ph.D. programs have already been established in the Department of Biology and are sufficient to support the two new degree programs. The reorganization created two new departments; the Department of Cell Biology, Microbiology, and Molecular Biology (CMMB) and the Department of Integrative Biology (IB). This proposal addresses the creation of a new Ph.D., in Integrative Biology offered by the Department of Integrative Biology (CIP Code 26.1399). The name of the Department, Integrative Biology, reflects the belief that the study of biological processes and systems can best be accomplished by the incorporation of numerous integrated approaches Strategic Goal(s) Item Supports: The proposed program directly supports the following: Goal 1 and Goal 2 Workgroup Review: ACE March 7, 2013 Supporting Documentation: See Complete Proposal below Prepared by: Dr. -
Multi-National Conservation of Alligator Lizards
MULTI-NATIONAL CONSERVATION OF ALLIGATOR LIZARDS: APPLIED SOCIOECOLOGICAL LESSONS FROM A FLAGSHIP GROUP by ADAM G. CLAUSE (Under the Direction of John Maerz) ABSTRACT The Anthropocene is defined by unprecedented human influence on the biosphere. Integrative conservation recognizes this inextricable coupling of human and natural systems, and mobilizes multiple epistemologies to seek equitable, enduring solutions to complex socioecological issues. Although a central motivation of global conservation practice is to protect at-risk species, such organisms may be the subject of competing social perspectives that can impede robust interventions. Furthermore, imperiled species are often chronically understudied, which prevents the immediate application of data-driven quantitative modeling approaches in conservation decision making. Instead, real-world management goals are regularly prioritized on the basis of expert opinion. Here, I explore how an organismal natural history perspective, when grounded in a critique of established human judgements, can help resolve socioecological conflicts and contextualize perceived threats related to threatened species conservation and policy development. To achieve this, I leverage a multi-national system anchored by a diverse, enigmatic, and often endangered New World clade: alligator lizards. Using a threat analysis and status assessment, I show that one recent petition to list a California alligator lizard, Elgaria panamintina, under the US Endangered Species Act often contradicts the best available science. -
Froglog95 New Version Draft1.Indd
March 2011 Vol. 95 FrogLogwww.amphibians.org News from the herpetological community The new face of the ASG “Lost” Frogs Red List The global search Updating South comes to an end. Africas Red Where next? Lists. Page 1 FrogLog Vol. 95 | March 2011 | 1 2 | FrogLog Vol. 95 | March 2011 CONTENTS The Sierra Caral of Guatemala a refuge for endemic amphibians page 5 The Search for “Lost” Frogs page 12 Recent diversifi cation in old habitats: Molecules and morphology in the endangered frog, Craugastor uno page 17 Updating the IUCN Red List status of South African amphibians 6 Amphibians on the IUCN Red List: Developments and changes since the Global Amphibian Assessment 7 The forced closure of conservation work on Seychelles Sooglossidae 8 Alien amphibians challenge Darwin’s naturalization hypothesis 9 Is there a decline of amphibian richness in Bellanwila-Attidiya Sanctuary? 10 High prevalence of the amphibian chytrid pathogen in Gabon 11 Breeding-site selection by red-belly toads, Melanophryniscus stelzneri (Anura: Bufonidae), in Sierras of Córdoba, Argentina 11 Upcoming meetings 20 | Recent Publications 20 | Internships & Jobs 23 Funding Opportunities 22 | Author Instructions 24 | Current Authors 25 FrogLog Vol. 95 | March 2011 | 3 FrogLog Editorial elcome to the new-look FrogLog. It has been a busy few months Wfor the ASG! We have redesigned the look and feel of FrogLog ASG & EDITORIAL COMMITTEE along with our other media tools to better serve the needs of the ASG community. We hope that FrogLog will become a regular addition to James P. Collins your reading and a platform for sharing research, conservation stories, events, and opportunities. -
U.S. Fish & Wildlife Service June 14, 2016 Biological Opinion Revised
U.S. Fish & Wildlife Service June 14, 2016 Biological Opinion ON Revised Land and Resource Management Plan Amendment to increase Florida Scrub- Jay Management Areas on the Ocala National Forest (Amendment 12) Prepared by: U.S. Fish and Wildlife Service Jacksonville, Florida Biological Opinion U.S. Forest Service Southern Region FWS Log No. 04EF1000-2016-F-0215 2 The Service concurs with your determination that the effects from activities under the proposed amendment on the Florida bonamia, scrub buckwheat, and Lewton’s polygala are within the scope of effects described in the September 18, 1998 BA for the LRMP and evaluated in the Service’s 1998 Opinion. In addition, effects of implementing the LRMP (including the proposed amendment) on the scrub pigeon wings were recently disclosed in your Biological Assessment (BA) of Nov 24, 2015 were evaluated in the Service’s Opinion of December 17, 2015. Therefore, these plant species will not be addressed further in the amended Opinion below. This amended Opinion is based on information provided to the Service through a BA, telephone conversations, e-mails, field investigation notes, and other sources of information. A complete administrative record of this consultation is on file at the Jacksonville Ecological Services Office. Consultation History September 21, 1998: NFF initiated formal consultation on revision of the LRMP December 18, 1998: The Service provided a non-jeopardy combined Biological and Conference Opinion on the LRMP to NFF concluding formal consultation. From March 2014 to November of 2015, the Service and staff from the NFF supervisor’s office and ONF participated in several meetings and conference calls to discuss how to address Forest Service Section 7(a)(1) obligations under the Act and the proposed amendment to the NFF LRMP. -
Checklist of Reptiles and Amphibians Revoct2017
CHECKLIST of AMPHIBIANS and REPTILES of ARCHBOLD BIOLOGICAL STATION, the RESERVE, and BUCK ISLAND RANCH, Highlands County, Florida. Voucher specimens of species recorded from the Station are deposited in the Station reference collections and the herpetology collection of the American Museum of Natural History. Occurrence3 Scientific name1 Common name Status2 Exotic Station Reserve Ranch AMPHIBIANS Order Anura Family Bufonidae Anaxyrus quercicus Oak Toad X X X Anaxyrus terrestris Southern Toad X X X Rhinella marina Cane Toad ■ X Family Hylidae Acris gryllus dorsalis Florida Cricket Frog X X X Hyla cinerea Green Treefrog X X X Hyla femoralis Pine Woods Treefrog X X X Hyla gratiosa Barking Treefrog X X X Hyla squirella Squirrel Treefrog X X X Osteopilus septentrionalis Cuban Treefrog ■ X X Pseudacris nigrita Southern Chorus Frog X X Pseudacris ocularis Little Grass Frog X X X Family Leptodactylidae Eleutherodactylus planirostris Greenhouse Frog ■ X X X Family Microhylidae Gastrophryne carolinensis Eastern Narrow-mouthed Toad X X X Family Ranidae Lithobates capito Gopher Frog X X X Lithobates catesbeianus American Bullfrog ? 4 X X Lithobates grylio Pig Frog X X X Lithobates sphenocephalus sphenocephalus Florida Leopard Frog X X X Order Caudata Family Amphiumidae Amphiuma means Two-toed Amphiuma X X X Family Plethodontidae Eurycea quadridigitata Dwarf Salamander X Family Salamandridae Notophthalmus viridescens piaropicola Peninsula Newt X X Family Sirenidae Pseudobranchus axanthus axanthus Narrow-striped Dwarf Siren X Pseudobranchus striatus -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Evolution of Limblessness
Evolution of Limblessness Evolution of Limblessness Early on in life, many people learn that lizards have four limbs whereas snakes have none. This dichotomy not only is inaccurate but also hides an exciting story of repeated evolution that is only now beginning to be understood. In fact, snakes represent only one of many natural evolutionary experiments in lizard limblessness. A similar story is also played out, though to a much smaller extent, in amphibians. The repeated evolution of snakelike tetrapods is one of the most striking examples of parallel evolution in animals. This entry discusses the evolution of limblessness in both reptiles and amphibians, with an emphasis on the living reptiles. Reptiles Based on current evidence (Wiens, Brandley, and Reeder 2006), an elongate, limb-reduced, snakelike morphology has evolved at least twenty-five times in squamates (the group containing lizards and snakes), with snakes representing only one such origin. These origins are scattered across the evolutionary tree of squamates, but they seem especially frequent in certain families. In particular, the skinks (Scincidae) contain at least half of all known origins of snakelike squamates. But many more origins within the skink family will likely be revealed as the branches of their evolutionary tree are fully resolved, given that many genera contain a range of body forms (from fully limbed to limbless) and may include multiple origins of snakelike morphology as yet unknown. These multiple origins of snakelike morphology are superficially similar in having reduced limbs and an elongate body form, but many are surprisingly different in their ecology and morphology. This multitude of snakelike lineages can be divided into two ecomorphs (a are surprisingly different in their ecology and morphology. -
Unearthing the Past and Present of a Semi-Fossorial Lizard: Conservation Genetics, Phylogeography, and Taxonomy of Plestiodon Egregius
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2018 Unearthing the Past and Present of a Semi-fossorial Lizard: Conservation Genetics, Phylogeography, and Taxonomy of Plestiodon egregius. Kathryn Mercier University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Masters Thesis (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Mercier, Kathryn, "Unearthing the Past and Present of a Semi-fossorial Lizard: Conservation Genetics, Phylogeography, and Taxonomy of Plestiodon egregius." (2018). Electronic Theses and Dissertations, 2004-2019. 6028. https://stars.library.ucf.edu/etd/6028 UNEARTHING THE PAST AND PRESENT OF A SEMI-FOSSORIAL LIZARD: CONSERVATION GENETICS, PHYLOGEOGRAPHY, AND TAXONOMY OF Plestiodon egregius by KATHRYN P. MERCIER B.S. University of Central Florida, 2012 A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Biology in the Department of Biology in the College of Sciences at the University of Central Florida Orlando, Florida Summer Term 2018 Major Professors: Christopher L. Parkinson and Anna E. Savage c 2018 Kathryn P. Mercier ii ABSTRACT Characterizing an organism’s evolutionary history and population structure as well as understanding the forces shaping that divergence is crucial to conservation biology. A clear understanding of the patterns of diversity and divergence are imperative for the best management of the organism, while an awareness of what drives these patterns can lead to better predictions of how organisms will respond to future climate change. -
Molecular Phylogenetics and Evolution 55 (2010) 153–167
Molecular Phylogenetics and Evolution 55 (2010) 153–167 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Conservation phylogenetics of helodermatid lizards using multiple molecular markers and a supertree approach Michael E. Douglas a,*, Marlis R. Douglas a, Gordon W. Schuett b, Daniel D. Beck c, Brian K. Sullivan d a Illinois Natural History Survey, Institute for Natural Resource Sustainability, University of Illinois, Champaign, IL 61820, USA b Department of Biology and Center for Behavioral Neuroscience, Georgia State University, Atlanta, GA 30303-3088, USA c Department of Biological Sciences, Central Washington University, Ellensburg, WA 98926, USA d Division of Mathematics & Natural Sciences, Arizona State University, Phoenix, AZ 85069, USA article info abstract Article history: We analyzed both mitochondrial (MT-) and nuclear (N) DNAs in a conservation phylogenetic framework to Received 30 June 2009 examine deep and shallow histories of the Beaded Lizard (Heloderma horridum) and Gila Monster (H. Revised 6 December 2009 suspectum) throughout their geographic ranges in North and Central America. Both MTDNA and intron Accepted 7 December 2009 markers clearly partitioned each species. One intron and MTDNA further subdivided H. horridum into its Available online 16 December 2009 four recognized subspecies (H. n. alvarezi, charlesbogerti, exasperatum, and horridum). However, the two subspecies of H. suspectum (H. s. suspectum and H. s. cinctum) were undefined. A supertree approach sus- Keywords: tained these relationships. Overall, the Helodermatidae is reaffirmed as an ancient and conserved group. Anguimorpha Its most recent common ancestor (MRCA) was Lower Eocene [35.4 million years ago (mya)], with a 25 ATPase Enolase my period of stasis before the MRCA of H. -
1 Sequencing and Comparative Analysis of The
SEQUENCING AND COMPARATIVE ANALYSIS OF THE MITOCHONDRIAL CYTOCHROME B GENE IN THE MARION UPLANDS FLORIDA SAND SKINK (PLESTIODON REYNOLDSI) by Taylor Locklear A Senior Honors Project Presented to the Honors College East Carolina University In Partial Fulfillment of the Requirements for Graduation with Honors by Taylor Locklear Greenville, NC May 2016 Approved by: Trip Lamb Department of Biology, Thomas Harriot College of Arts and Sciences 1 Abstract The Florida sand skink (Plestiodon reynoldsi)—a small (~10 cm) lizard endemic to the peninsula—is a ‘sand-swimming’ specialist restricted to Florida scrub habitat on the state’s central highland ridges. Florida scrub has been severely fragmented through urban growth and citrus farming, and less than 10% of this ecosystem remains. Given the skink’s limited geographic range and extensive population fragmentation, P. reynoldsi was listed as a federally threatened species in 1987. I surveyed skink populations from the Marion Uplands, where suitable lizard habitat is naturally (and has been historically) isolated from scrub on nearby Mt. Dora and Lake Wales ridges. I wanted to determine genetic relatedness of Marion Uplands skinks to those inhabiting these two ridges and hypothesized that Marion populations should be more similar genetically to those on the Mt. Dora ridge, given their geographic proximity. Mitochondrial DNA sequence analysis confirmed this hypothesis but also revealed unexpectedly high levels of genetic divergence between the Marion and Mt. Dora populations. Indeed, observed genetic divergence was comparable to that detected between Marion and Lake Wales populations. 2 Acknowledgments I thank Paul Moler of the Florida Fish and Wildlife Commission for providing the tail tip samples utilized in this project. -
Sand Skink Dorsum and Venter
80.1 NEOSEPS REPTILIA: SQUAMATA: SAURIA: SCINCIDAE N. REYNOLDSI Catalogue of American Amphibians and Reptiles. Living specimens vary in coloration from dirty white to deep tan, often becoming dark brown after preservation. At hatch• TELFORD,SAM R., JR. 1969. Neoseps and N. reyn.oldsi. ing a wide black band extends from tail tip to snout along each side. In older lizards this band may be reduced to spots along the three lateral scale rows, or disappears except from eye to Neoseps Stejneger snout. Some specimens have a dark spot on every scale of Sand skink dorsum and venter. There is no significant sexual dimorphism in scalation or coloration. Neoseps Stejneger, 1910:33. Type species, Neoseps reynoldsi Burt (1937), Carr (1940), Smith (1946) and Carr and Stejneger, 1910, by monotypy. Goin (1959) provided descriptions of N. reynoldsi. • CONTENT.One Recent species, N. reynoldsi, is recognized. • ILLUSTRATIONS.Sketches of habitus and line drawings of diagnostic characters were presented by Stejneger (1910) • DEFINITION. A scincid genus with moveable eyelids, the and Burt (1935), and were republished in Smith (1946). lower eyelid containing a transparent window; no external ear Photographs were provided by Smith (1946), Pope (1955), A. opening; supranasals present; no frontoparietals; nostril be• Schmidt (1955), Conant (1958), and Carr and Goin (1959). tween nasals; palatine bones separated along median line of Telford (1959) presented drawings of limb osteology. palate; digits reduced to one on fore limbs and two on hind limbs. • DISTRIBUTION.Neoseps reynoldsi occurs in rosemary scrub and sandhills habitats in Lake, Polk and Highlands counties, • DESCRIPTIONS,ILLUSTRATIONS,DISTRIBUTION,FOSSILRECORD, Florida. -
The Ecology of Lizard Reproductive Output
Global Ecology and Biogeography, (Global Ecol. Biogeogr.) (2011) ••, ••–•• RESEARCH The ecology of lizard reproductive PAPER outputgeb_700 1..11 Shai Meiri1*, James H. Brown2 and Richard M. Sibly3 1Department of Zoology, Tel Aviv University, ABSTRACT 69978 Tel Aviv, Israel, 2Department of Biology, Aim We provide a new quantitative analysis of lizard reproductive ecology. Com- University of New Mexico, Albuquerque, NM 87131, USA and Santa Fe Institute, 1399 Hyde parative studies of lizard reproduction to date have usually considered life-history Park Road, Santa Fe, NM 87501, USA, 3School components separately. Instead, we examine the rate of production (productivity of Biological Sciences, University of Reading, hereafter) calculated as the total mass of offspring produced in a year. We test ReadingRG6 6AS, UK whether productivity is influenced by proxies of adult mortality rates such as insularity and fossorial habits, by measures of temperature such as environmental and body temperatures, mode of reproduction and activity times, and by environ- mental productivity and diet. We further examine whether low productivity is linked to high extinction risk. Location World-wide. Methods We assembled a database containing 551 lizard species, their phyloge- netic relationships and multiple life history and ecological variables from the lit- erature. We use phylogenetically informed statistical models to estimate the factors related to lizard productivity. Results Some, but not all, predictions of metabolic and life-history theories are supported. When analysed separately, clutch size, relative clutch mass and brood frequency are poorly correlated with body mass, but their product – productivity – is well correlated with mass. The allometry of productivity scales similarly to metabolic rate, suggesting that a constant fraction of assimilated energy is allocated to production irrespective of body size.