Global Satellite-Observed Daily Vertical Migrations of Ocean Animals
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Does a Latitudinal Gradient Exist?
Notes 1813 Limnol. Oceatzogr., 38(8). 1993, 1813-1818 (0 1993, by the Ameruzan Society of Limnology and Oceanography. Inc Chlorophyll a concentrations in the North Pacific: Does a latitudinal gradient exist? Abstract -Chlorophyll a concentrations were tion properties of glass-fiber and membrane measured as a function of depth from 28 to 48”N filters have demonstrated that glass-fiber filters along 152”W in March 199 1 with Whatman GF/F and 0.2~pm Nuclepore filters. Surface Chl a concen- inadequately retain < 1-pm-diameter cells due trations measured with 0.2~ym Nuclepore filters were to their large nominal pore size (0.7 and 1.2 up to fourfold higher than those measured with pm for Whatman GF/F and GF/C filters). Low Whatman GF/F filters. The largest difference be- retention efficiencies of glass-fiber filters result tween the two filter types was found in subtropical waters, where picoplankton were a major constituent when Chl a concentrations are low (<0.5-l .O of the phytoplankton assemblage. Chl a concentra- pg Chl a liter-‘) and when picoplankton are a tions integrated from 0 to 175 m showed a threefold dominant fraction of the phytoplankton as- increase (9-26 mg Chl a m-I) between 28 and 48”N semblage (Phinney and Yentsch 1985; Taguchi when Whatman GF/F filters were used. However, integrated Chl a concentrations based on measure- and Laws 1988). Under such conditions the ments with 0.2~pm Nuclepore filters were nearly con- use of membrane filters with submicron pore stant (25-3 1 mg Chl a mpZ) over the transect. -
Flow Cytometric Investigation of the Size Spectrum of North Sea Phytoplankton Communities
FLOW CYTOMETRIC INVESTIGATION OF THE SIZE SPECTRUM OF NORTH SEA PHYTOPLANKTON COMMUNITIES Katy R. Owen A thesis submitted to the School of Environmental Sciences, at the University of East Anglia, for the degree of Doctor of Philosophy, May 2014. © This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. 2 ABSTRACT Marine biogeochemical processes are closely linked to phytoplankton community assemblages. Cell abundance and biomass are a measure of the successful conversion of inorganic to organic carbon. Carbon estimates are therefore often used to analyse metabolism and energy transfers within marine environments, and carbon is frequently the main parameter used in ecosystem models. Phytoplankton can be divided into functional types based on cell size: microplankton (<200 µm), nanoplankton (2-20 µm) and picoplankton (≤ 3 µm). Differences in cell volume govern variations in carbon content, nutrient uptake and influence cell fate. Reduced diameters equate to lower sedimentation rates and promote participation within the microbial loop and recycling of carbon within surface waters. Larger diameters can increase settling rates, resulting in the loss of carbon from surface waters. Current North Sea monitoring and research programmes typically only consider larger micro- and nanoplankton cells, or the bulk phytoplankton community as a whole: there is little separation by functional type. Inclusion of picoplankton and the delineation of biomass contribution by cell size are required for accurate depictions of phytoplankton productivity within this region, but this is not feasible with current water sampling protocols. -
Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun
OCEANOGRAPHY – Vol.II - Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun BIOLOGICAL OCEANOGRAPHY Legendre, Louis and Rassoulzadegan, Fereidoun Laboratoire d'Océanographie de Villefranche, France. Keywords: Algae, allochthonous nutrient, aphotic zone, autochthonous nutrient, Auxotrophs, bacteria, bacterioplankton, benthos, carbon dioxide, carnivory, chelator, chemoautotrophs, ciliates, coastal eutrophication, coccolithophores, convection, crustaceans, cyanobacteria, detritus, diatoms, dinoflagellates, disphotic zone, dissolved organic carbon (DOC), dissolved organic matter (DOM), ecosystem, eukaryotes, euphotic zone, eutrophic, excretion, exoenzymes, exudation, fecal pellet, femtoplankton, fish, fish lavae, flagellates, food web, foraminifers, fungi, harmful algal blooms (HABs), herbivorous food web, herbivory, heterotrophs, holoplankton, ichthyoplankton, irradiance, labile, large planktonic microphages, lysis, macroplankton, marine snow, megaplankton, meroplankton, mesoplankton, metazoan, metazooplankton, microbial food web, microbial loop, microheterotrophs, microplankton, mixotrophs, mollusks, multivorous food web, mutualism, mycoplankton, nanoplankton, nekton, net community production (NCP), neuston, new production, nutrient limitation, nutrient (macro-, micro-, inorganic, organic), oligotrophic, omnivory, osmotrophs, particulate organic carbon (POC), particulate organic matter (POM), pelagic, phagocytosis, phagotrophs, photoautotorphs, photosynthesis, phytoplankton, phytoplankton bloom, picoplankton, plankton, -
Is Chloroplastic Class IIA Aldolase a Marine Enzyme&Quest;
The ISME Journal (2016) 10, 2767–2772 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej SHORT COMMUNICATION Is chloroplastic class IIA aldolase a marine enzyme? Hitoshi Miyasaka1, Takeru Ogata1, Satoshi Tanaka2, Takeshi Ohama3, Sanae Kano4, Fujiwara Kazuhiro4,7, Shuhei Hayashi1, Shinjiro Yamamoto1, Hiro Takahashi5, Hideyuki Matsuura6 and Kazumasa Hirata6 1Department of Applied Life Science, Sojo University, Kumamoto, Japan; 2The Kansai Electric Power Co., Environmental Research Center, Keihanna-Plaza, Kyoto, Japan; 3School of Environmental Science and Engineering, Kochi University of Technology, Kochi, Japan; 4Chugai Technos Corporation, Hiroshima, Japan; 5Graduate School of Horticulture, Faculty of Horticulture, Chiba University, Chiba, Japan and 6Environmental Biotechnology Laboratory, Graduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan Expressed sequence tag analyses revealed that two marine Chlorophyceae green algae, Chlamydo- monas sp. W80 and Chlamydomonas sp. HS5, contain genes coding for chloroplastic class IIA aldolase (fructose-1, 6-bisphosphate aldolase: FBA). These genes show robust monophyly with those of the marine Prasinophyceae algae genera Micromonas, Ostreococcus and Bathycoccus, indicating that the acquisition of this gene through horizontal gene transfer by an ancestor of the green algal lineage occurred prior to the divergence of the core chlorophytes (Chlorophyceae and Treboux- iophyceae) and the prasinophytes. The absence of this gene in some freshwater chlorophytes, such as Chlamydomonas reinhardtii, Volvox carteri, Chlorella vulgaris, Chlorella variabilis and Coccomyxa subellipsoidea, can therefore be explained by the loss of this gene somewhere in the evolutionary process. Our survey on the distribution of this gene in genomic and transcriptome databases suggests that this gene occurs almost exclusively in marine algae, with a few exceptions, and as such, we propose that chloroplastic class IIA FBA is a marine environment-adapted enzyme. -
Advances in MARINE BIOLOGY
Advances in MARINE BIOLOGY VOLUME 46 ThisPageIntentionallyLeftBlank Advances in MARINE BIOLOGY Edited by A. J. SOUTHWARD Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK P. A. TYLER School of Ocean and Earth Science, University of Southampton, Southampton Oceanography Centre, European Way, Southampton, SO14 3ZH, UK C. M. YOUNG Oregon Institute of Marine Biology, University of Oregon P.O. Box 5389, Charleston, Oregon 97420, USA and L. A. FUIMAN Marine Science Institute, University of Texas at Austin, 750 Channel View Drive, Port Aransas, Texas 78373, USA Amsterdam – Boston – Heidelberg – London – New York – Oxford Paris – San Diego – San Francisco – Singapore – Sydney – Tokyo This book is printed on acid-free paper. ß 2003 Elsevier Science Ltd. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the Publisher. The appearance of the code at the bottom of the first page of a chapter in this book indicates the Publisher’s consent that copies of the chapter may be made for personal or internal use of specific clients. This consent is given on the condition, however, that the copier pay the stated per copy fee through the Copyright Clearance Center, Inc. (222 Rosewood Drive, Danvers, Massachusetts 01923), for copying beyond that permitted by Sections 107 or 108 of the U.S. Copyright Law. This consent does not extend to other kinds of copying, such as copying for general distribution, for advertising or promotional purposes, for creating new collective works, or for resale. -
Effects of Salinity on Diel Vertical Migration Behavior in Two Red-Tide Algae, Chattonella Antiqua and Karenia Mikimotoi
Plankton Benthos Res 9(1): 42–50, 2014 Plankton & Benthos Research © The Plankton Society of Japan Effects of salinity on diel vertical migration behavior in two red-tide algae, Chattonella antiqua and Karenia mikimotoi 1, 1 1 2 TOMOYUKI SHIKATA *, SETSUKO SAKAMOTO , GOH ONITSUKA , KAZUHIRO AOKI & 1 MINEO YAMAGUICHI 1 National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, Maruishi 2–17–5, Hatsukaichi, Hiroshima 739–0452, Japan. 2 National Research Institute of Fisheries Science, Fisheries Research Agency, 2–12–4 Fukuura, Kanazawa, Yokohama, Kanagawa 236–8648, Japan. Received 17 May 2013; Accepted 4 December 2013 Abstract: We examined the effects of salinity on diel vertical migration (DVM) of two coastal flagellates, Chattonella antiqua and Karenia mikimotoi, in 90-cm-high columnar aquariums. Experiments were performed with surface sa- linities from 5 to 32 and bottom salinity constant at 32. Cells of each flagellate were injected into the bottom of the aquarium at night and the vertical distribution of cells was monitored every 4 h for 36 h in one series of experiments, or twice daily (day and night) for 5 days in another. Ascent and descent started at approximately the same time in all water columns, indicating that difference in surface salinity does not substantially affect DVM rhythm in the two flagellates. During daytime, C. antiqua and K. mikimotoi transited haloclines with surface salinities ≥15 and accumu- lated at the surface, although K. mikimotoi required 2 days to transit the halocline with surface salinity of 20 and 4 days for surface salinity of 15. However, neither flagellate could transit haloclines with surface salinities of 5 or 10; instead they accumulated in the halocline during daytime. -
Assessing the Role of Dust Deposition on Phytoplankton Ecophysiology
Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Biogeosciences Discuss., 9, 19199–19243, 2012 www.biogeosciences-discuss.net/9/19199/2012/ Biogeosciences doi:10.5194/bgd-9-19199-2012 Discussions BGD © Author(s) 2012. CC Attribution 3.0 License. 9, 19199–19243, 2012 This discussion paper is/has been under review for the journal Biogeosciences (BG). Assessing the role of Please refer to the corresponding final paper in BG if available. dust deposition on phytoplankton Assessing the role of dust deposition on ecophysiology phytoplankton ecophysiology and V. Giovagnetti et al. succession in a low-nutrient Title Page low-chlorophyll ecosystem: a mesocosm Abstract Introduction experiment in the Mediterranean Sea Conclusions References Tables Figures V. Giovagnetti1, C. Brunet1, F. Conversano1, F. Tramontano1, I. Obernosterer2,3, C. Ridame4, and C. Guieu5,6 J I 1Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy 2Universite´ Pierre et Marie Curie-Paris 6, UMR 7621, LOMIC, Observatoire Oceanologique,´ J I F-66650 Banyuls/Mer, France Back Close 3CNRS, UMR 7621, LOMIC, Observatoire Oceanologique,´ 66650 Banyuls/Mer, France 4Laboratoire d’Oceanographie´ et du Climat: Experimentations´ et Approches Numeriques´ Full Screen / Esc (LOCEAN), CNRS-Universite´ Paris VI, Campus Jussieu, Paris, France 5 Laboratoire d’Oceanographie´ de Villefranche/Mer, CNRS-INSU, UMR7093, Observatoire Printer-friendly Version Oceanologique,´ 06230, Villefranche/Mer, France 6 Universite´ Pierre et Marie Curie-Paris 6, UMR 7093, LOV, Observatoire Oceanologique,´ Interactive Discussion 06230, Villefranche/Mer, France 19199 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Received: 30 November 2012 – Accepted: 5 December 2012 – Published: 21 December 2012 Correspondence to: C. Brunet ([email protected]) BGD Published by Copernicus Publications on behalf of the European Geosciences Union. -
Emerging Interaction Patterns in the Emiliania Huxleyi-Ehv System
viruses Article Emerging Interaction Patterns in the Emiliania huxleyi-EhV System Eliana Ruiz 1,*, Monique Oosterhof 1,2, Ruth-Anne Sandaa 1, Aud Larsen 1,3 and António Pagarete 1 1 Department of Biology, University of Bergen, Bergen 5006, Norway; [email protected] (R.-A.S.); [email protected] (A.P.) 2 NRL for fish, Shellfish and Crustacean Diseases, Central Veterinary Institute of Wageningen UR, Lelystad 8221 RA, The Nederlands; [email protected] 3 Uni Research Environment, Nygårdsgaten 112, Bergen 5008, Norway; [email protected] * Correspondence: [email protected]; Tel.: +47-5558-8194 Academic Editors: Mathias Middelboe and Corina Brussaard Received: 30 January 2017; Accepted: 16 March 2017; Published: 22 March 2017 Abstract: Viruses are thought to be fundamental in driving microbial diversity in the oceanic planktonic realm. That role and associated emerging infection patterns remain particularly elusive for eukaryotic phytoplankton and their viruses. Here we used a vast number of strains from the model system Emiliania huxleyi/Emiliania huxleyi Virus to quantify parameters such as growth rate (µ), resistance (R), and viral production (Vp) capacities. Algal and viral abundances were monitored by flow cytometry during 72-h incubation experiments. The results pointed out higher viral production capacity in generalist EhV strains, and the virus-host infection network showed a strong co-evolution pattern between E. huxleyi and EhV populations. The existence of a trade-off between resistance and growth capacities was not confirmed. Keywords: Phycodnaviridae; Coccolithovirus; Coccolithophore; Haptophyta; Killing-the-winner; cost of resistance; infectivity trade-offs; algae virus; marine viral ecology; viral-host interactions 1. -
Mixotrophy Among Dinoflagellates1
J Eukaryn Microbiol.. 46(4). 1999 pp. 397-401 0 1999 by the Society of Protozoologists Mixotrophy among Dinoflagellates’ DIANE K. STOECKER University of Maryland Center for Environmentul Science, Horn Point Laboratory, P.O. Box 775, Cambridge, Marylund 21613, USA ABSTRACT. Mixotrophy, used herein for the combination of phototrophy and phagotrophy, is widespread among dinoflagellates. It occurs among most, perhaps all, of the extant orders, including the Prorocentrales, Dinophysiales, Gymnodiniales, Noctilucales, Gon- yaulacales, Peridiniales, Blastodiniales, Phytodiniales, and Dinamoebales. Many cases of mixotrophy among dinoflagellates are probably undocumented. Primarily photosynthetic dinoflagellates with their “own” plastids can often supplement their nutrition by preying on other cells. Some primarily phagotrophic species are photosynthetic due to the presence of kleptochloroplasts or algal endosymbionts. Some parasitic dinoflagellates have plastids and are probably mixotrophic. For most mixotrophic dinoflagellates, the relative importance of photosynthesis, uptake of dissolved inorganic nutrients, and feeding are unknown. However, it is apparent that mixotrophy has different functions in different physiological types of dinoflagellates. Data on the simultaneous regulation of photosynthesis, assimilation of dissolved inorganic and organic nutrients, and phagotophy by environmental parameters (irradiance, availablity of dissolved nutrients, availability of prey) and by life history events are needed in order to understand the diverse -
Ocean Iron Fertilization Experiments – Past, Present, and Future Looking to a Future Korean Iron Fertilization Experiment in the Southern Ocean (KIFES) Project
Biogeosciences, 15, 5847–5889, 2018 https://doi.org/10.5194/bg-15-5847-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 3.0 License. Reviews and syntheses: Ocean iron fertilization experiments – past, present, and future looking to a future Korean Iron Fertilization Experiment in the Southern Ocean (KIFES) project Joo-Eun Yoon1, Kyu-Cheul Yoo2, Alison M. Macdonald3, Ho-Il Yoon2, Ki-Tae Park2, Eun Jin Yang2, Hyun-Cheol Kim2, Jae Il Lee2, Min Kyung Lee2, Jinyoung Jung2, Jisoo Park2, Jiyoung Lee1, Soyeon Kim1, Seong-Su Kim1, Kitae Kim2, and Il-Nam Kim1 1Department of Marine Science, Incheon National University, Incheon 22012, Republic of Korea 2Korea Polar Research Institute, Incheon 21990, Republic of Korea 3Woods Hole Oceanographic Institution, MS 21, 266 Woods Hold Rd., Woods Hole, MA 02543, USA Correspondence: Il-Nam Kim ([email protected]) Received: 2 November 2016 – Discussion started: 15 November 2016 Revised: 16 August 2018 – Accepted: 18 August 2018 – Published: 5 October 2018 Abstract. Since the start of the industrial revolution, hu- providing insight into mechanisms operating in real time and man activities have caused a rapid increase in atmospheric under in situ conditions. To maximize the effectiveness of carbon dioxide (CO2) concentrations, which have, in turn, aOIF experiments under international aOIF regulations in the had an impact on climate leading to global warming and future, we therefore suggest a design that incorporates sev- ocean acidification. Various approaches have been proposed eral components. (1) Experiments conducted in the center of to reduce atmospheric CO2. The Martin (or iron) hypothesis an eddy structure when grazing pressure is low and silicate suggests that ocean iron fertilization (OIF) could be an ef- levels are high (e.g., in the SO south of the polar front during fective method for stimulating oceanic carbon sequestration early summer). -
Factors Controlling the Community Structure of Picoplankton in Contrasting Marine Environments
Biogeosciences, 15, 6199–6220, 2018 https://doi.org/10.5194/bg-15-6199-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Factors controlling the community structure of picoplankton in contrasting marine environments Jose Luis Otero-Ferrer1, Pedro Cermeño2, Antonio Bode6, Bieito Fernández-Castro1,3, Josep M. Gasol2,5, Xosé Anxelu G. Morán4, Emilio Marañon1, Victor Moreira-Coello1, Marta M. Varela6, Marina Villamaña1, and Beatriz Mouriño-Carballido1 1Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, Vigo, Spain 2Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas, Barcelona, Spain 3Departamento de Oceanografía, Instituto de investigacións Mariñas (IIM-CSIC), Vigo, Spain 4King Abdullah University of Science and Technology (KAUST), Read Sea Research Center, Biological and Environmental Sciences and Engineering Division, Thuwal, Saudi Arabia 5Centre for Marine Ecosystem Research, School of Sciences, Edith Cowan University, WA, Perth, Australia 6Centro Oceanográfico de A Coruña, Instituto Español de Oceanografía (IEO), A Coruña, Spain Correspondence: Jose Luis Otero-Ferrer ([email protected]) Received: 27 April 2018 – Discussion started: 4 June 2018 Revised: 4 October 2018 – Accepted: 10 October 2018 – Published: 26 October 2018 Abstract. The effect of inorganic nutrients on planktonic as- played a significant role. Nitrate supply was the only fac- semblages has traditionally relied on concentrations rather tor that allowed the distinction among the ecological -
Silicification in the Microalgae
Silicification in the Microalgae Zoe V. Finkel 1 Silicifi cation in the Microalgae the cell wall, or Si may be bound to organic ligands associ- ated with the glycocalyx, or that Si may accumulate in peri- Silicon (Si) is the second most common element in the plasmic spaces associated with the cell wall (Baines et al. Earth’s crust (Williams 1981 ) and has been incorporated in 2012 ). In the case of fi eld populations of marine species from most of the biological kingdoms (Knoll 2003 ). Synechococcus , silicon to phosphorus ratios can approach In this review I focus on what is known about: Si accumula- values found in diatoms, and signifi cant cellular concentra- tion and the formation of siliceous structures in microalgae tions of Si have been confi rmed in some laboratory strains and some related non-photosynthetic groups, molecular and (Baines et al. 2012 ). The hypothesis that Si accumulates genetic mechanisms controlling silicifi cation, and the poten- within the periplasmic space of the outer cell wall is sup- tial costs and benefi ts associated with silicifi cation in the ported by the observation that a silicon layer forms within microalgae. This chapter uses the terminology recommended invaginations of the cell membrane in Bacillus cereus spores by Simpson and Volcani ( 1981 ): Si refers to the element and (Hirota et al. 2010 ). when the form of siliceous compound is unknown, silicic Signifi cant quantities of Si, likely opal, have been detected acid, Si(OH)4 , refers to the dominant unionized form of Si in in freshwater and marine green micro- and macro-algae (Fu aqueous solution at pH 7–8, and amorphous hydrated polym- et al.