07 Nota Teyer-Santiago Et Al B ORCID 2
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
An Evolutionary Switch in the Specificity of an Endosomal CORVET Tether Underlies
bioRxiv preprint doi: https://doi.org/10.1101/210328; this version posted October 27, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: An evolutionary switch in the specificity of an endosomal CORVET tether underlies formation of regulated secretory vesicles in the ciliate Tetrahymena thermophila Daniela Sparvolia, Elisabeth Richardsonb*, Hiroko Osakadac*, Xun Land,e*, Masaaki Iwamotoc, Grant R. Bowmana,f, Cassandra Kontura,g, William A. Bourlandh, Denis H. Lynni,j, Jonathan K. Pritchardd,e,k, Tokuko Haraguchic,l, Joel B. Dacksb, and Aaron P. Turkewitza th a Department of Molecular Genetics and Cell Biology, The University of Chicago, 920 E 58 Street, Chicago IL USA b Department of Cell Biology, University of Alberta, Canada c Advanced ICT Research Institute, National Institute of Information and Communications Technology (NICT), Kobe 651-2492, Japan. d Department of Genetics, Stanford University, Stanford, CA, 94305 e Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305 f current affiliation: Department of Molecular Biology, University of Wyoming, Laramie g current affiliation: Department of Genetics, Yale University School of Medicine, New Haven, CT 06510 h Department of Biological Sciences, Boise State University, Boise ID 83725-1515 I Department of Integrative Biology, University of Guelph, Guelph ON N1G 2W1, Canada j current affiliation: Department of Zoology, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada k Department of Biology, Stanford University, Stanford, CA, 94305 l Graduate School of Frontier Biosciences, Osaka University, Suita 565-0871, Japan. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
An Integrative Approach Sheds New Light Onto the Systematics
www.nature.com/scientificreports OPEN An integrative approach sheds new light onto the systematics and ecology of the widespread ciliate genus Coleps (Ciliophora, Prostomatea) Thomas Pröschold1*, Daniel Rieser1, Tatyana Darienko2, Laura Nachbaur1, Barbara Kammerlander1, Kuimei Qian1,3, Gianna Pitsch4, Estelle Patricia Bruni4,5, Zhishuai Qu6, Dominik Forster6, Cecilia Rad‑Menendez7, Thomas Posch4, Thorsten Stoeck6 & Bettina Sonntag1 Species of the genus Coleps are one of the most common planktonic ciliates in lake ecosystems. The study aimed to identify the phenotypic plasticity and genetic variability of diferent Coleps isolates from various water bodies and from culture collections. We used an integrative approach to study the strains by (i) cultivation in a suitable culture medium, (ii) screening of the morphological variability including the presence/absence of algal endosymbionts of living cells by light microscopy, (iii) sequencing of the SSU and ITS rDNA including secondary structures, (iv) assessment of their seasonal and spatial occurrence in two lakes over a one‑year cycle both from morphospecies counts and high‑ throughput sequencing (HTS), and, (v) proof of the co‑occurrence of Coleps and their endosymbiotic algae from HTS‑based network analyses in the two lakes. The Coleps strains showed a high phenotypic plasticity and low genetic variability. The algal endosymbiont in all studied strains was Micractinium conductrix and the mutualistic relationship turned out as facultative. Coleps is common in both lakes over the whole year in diferent depths and HTS has revealed that only one genotype respectively one species, C. viridis, was present in both lakes despite the diferent lifestyles (mixotrophic with green algal endosymbionts or heterotrophic without algae). -
The Symbiotic Life of Symbiodinium in the Open Ocean Within a New Species of Calcifying Ciliate (Tiarina Sp.)
The ISME Journal (2016) 10, 1424–1436 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej ORIGINAL ARTICLE The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.) Solenn Mordret1,2,5, Sarah Romac1,2, Nicolas Henry1,2, Sébastien Colin1,2, Margaux Carmichael1,2, Cédric Berney1,2, Stéphane Audic1,2, Daniel J Richter1,2, Xavier Pochon3,4, Colomban de Vargas1,2 and Johan Decelle1,2,6 1EPEP—Evolution des Protistes et des Ecosystèmes Pélagiques—team, Sorbonne Universités, UPMC Univ Paris 06, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 2CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 3Coastal and Freshwater Group, Cawthron Institute, Nelson, New Zealand and 4Institute of Marine Science, University of Auckland, Auckland, New Zealand Symbiotic partnerships between heterotrophic hosts and intracellular microalgae are common in tropical and subtropical oligotrophic waters of benthic and pelagic marine habitats. The iconic example is the photosynthetic dinoflagellate genus Symbiodinium that establishes mutualistic symbioses with a wide diversity of benthic hosts, sustaining highly biodiverse reef ecosystems worldwide. Paradoxically, although various species of photosynthetic dinoflagellates are prevalent eukaryotic symbionts in pelagic waters, Symbiodinium has not yet been reported in symbiosis within oceanic plankton, despite its high propensity for the symbiotic lifestyle. Here we report a new pelagic photosymbiosis between a calcifying ciliate host and the microalga Symbiodinium in surface ocean waters. Confocal and scanning electron microscopy, together with an 18S rDNA-based phylogeny, showed that the host is a new ciliate species closely related to Tiarina fusus (Colepidae). -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Flagellates, Ciliates) and Bacteria in Lake Kinneret, Israel
AQUATIC MICROBIAL ECOLOGY Published February 13 Aquat Microb Ecol Seasonal abundance and vertical distribution of Protozoa (flagellates, ciliates) and bacteria in Lake Kinneret, Israel Ora Hadas*, Tom Berman Israel Oceanographic & Limnological Research, The Yigal Allon Kinneret Limnological Laboratory, PO Box 345, Tiberias 14102, Israel ABSTRACT: The seasonal and vertical abundances of ciliates and flagellates are described over a 2 yr period in Lake Kinneret, Israel, a warm rneso-eutroph~cmonomictic lake. Ciliate numbers ranged from 3 to 47 cells ml-l. At the thermocline and oxycline region, the h~ghestcillate numbers were observed in autumn, with Coleps hirtus as the dominant speclea. Maximum heterotrophic nanoflagellate abun- dance (1300 cells ml") was found in the epilimnion In winter-spnng, minimum numbers (66 cells ml-') occurred in autumn. Bacteria ranged from 10ho 3 10' cells ml-l with h~ghestnumbers at the decline of the Peridinium yatunense bloom and the lowest during ivlnter. Protozoa, especially ciliates, appeared to be important food sources for metazooplankton. Top-down control is an important factor determin- ing the structure of the microbial loop in Lake Kinneret. KEY WORDS: HNAN Ciliates . Bacteria . Lake Kinneret INTRODUCTION for zooplankton in both marine and aquatic environ- ments (Beaver & Crisman 1989, Pace et al. 1990, The abundance and distribution of microorganisms Stoecker & Capuzzo 1990). in aquatic ecosystems result from a complex of envi- The abundance of each component within the ronmental factors and trophic interactions among a microbial loop, i.e. bacteria, picophytoplankton, fla- multitude of biotic components. In lakes, as in the gellates and ciliates, is controlled by some combina- marine habitat, important fluxes of carbon nutrients tion of bottom-up (nutrient supply) and top-down and energy are mediated by the microbial food web (grazing) regulation. -
Protozoologica
Acta Protozool. (2014) 53: 207–213 http://www.eko.uj.edu.pl/ap ACTA doi:10.4467/16890027AP.14.017.1598 PROTOZOOLOGICA Broad Taxon Sampling of Ciliates Using Mitochondrial Small Subunit Ribosomal DNA Micah DUNTHORN1, Meaghan HALL2, Wilhelm FOISSNER3, Thorsten STOECK1 and Laura A. KATZ2,4 1Department of Ecology, University of Kaiserslautern, 67663 Kaiserslautern, Germany; 2Department of Biological Sciences, Smith College, Northampton, MA 01063, USA; 3FB Organismische Biologie, Universität Salzburg, A-5020 Salzburg, Austria; 4Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA 01003, USA Abstract. Mitochondrial SSU-rDNA has been used recently to infer phylogenetic relationships among a few ciliates. Here, this locus is compared with nuclear SSU-rDNA for uncovering the deepest nodes in the ciliate tree of life using broad taxon sampling. Nuclear and mitochondrial SSU-rDNA reveal the same relationships for nodes well-supported in previously-published nuclear SSU-rDNA studies, al- though support for many nodes in the mitochondrial SSU-rDNA tree are low. Mitochondrial SSU-rDNA infers a monophyletic Colpodea with high node support only from Bayesian inference, and in the concatenated tree (nuclear plus mitochondrial SSU-rDNA) monophyly of the Colpodea is supported with moderate to high node support from maximum likelihood and Bayesian inference. In the monophyletic Phyllopharyngea, the Suctoria is inferred to be sister to the Cyrtophora in the mitochondrial, nuclear, and concatenated SSU-rDNA trees with moderate to high node support from maximum likelihood and Bayesian inference. Together these data point to the power of adding mitochondrial SSU-rDNA as a standard locus for ciliate molecular phylogenetic inferences. -
A Preliminary Survey on the Planktonic Biota in a Hypersaline Pond of Messolonghi Saltworks (W
diversity Article A Preliminary Survey on the Planktonic Biota in a Hypersaline Pond of Messolonghi Saltworks (W. Greece) George N. Hotos Plankton Culture Laboratory, Department of Animal Production, Fisheries & Aquaculture, University of Patras, 30200 Messolonghi, Greece; [email protected] Abstract: During a survey in 2015, an impressive assemblage of organisms was found in a hypersaline pond of the Messolonghi saltworks. The salinity ranged between 50 and 180 ppt, and the organisms that were found fell into the categories of Cyanobacteria (17 species), Chlorophytes (4 species), Diatoms (23 species), Dinoflagellates (1 species), Protozoa (40 species), Rotifers (8 species), Copepods (1 species), Artemia sp., one nematode and Alternaria sp. (Fungi). Fabrea salina was the most prominent protist among all samples and salinities. This ciliate has the potential to be a live food candidate for marine fish larvae. Asteromonas gracilis proved to be a sturdy microalga, performing well in a broad spectrum of culture salinities. Most of the specimens were identified to the genus level only. Based on their morphology, as there are no relevant records in Greece, there is a possibility for some to be either new species or strikingly different strains of certain species recorded elsewhere. Keywords: protists; cyanobacteria; rotifers; crustacea; hypersaline conditions; Messolonghi saltworks 1. Introduction Citation: Hotos, G.N. A Preliminary It is well known that saltwork waters support high algal densities due to the abun- Survey on the Planktonic Biota in a dance of nutrients concentrated by evaporation [1–3]. Apart from the fact that such Hypersaline Pond of Messolonghi ecosystems are of paramount ecological value, they are also a potential source for tolerant Saltworks (W. -
International Journal of Life Science and Pharma Research ISSN 2250 - 0480
ijlpr 2021; doi 10.22376/ijpbs/lpr.2021.11.4.L85-96 International Journal of Life science and Pharma Research ISSN 2250 - 0480 Chemistry for New drug discovery Research Article Biometric Estimation for Understanding the Nature of Vorticella Stalk Contraction- Extension Repeated Consequential Cyclic Processes Dr. Amit Kumar Verma* Cell Biol. Res. Lab., P. G. Department of Zoology, J. P. University, Chapra, Bihar, India. Pin Code – 841301. Abstract: Vorticella stalk is the storehouse of two types of novel proteins, known with the names of spasmins and batonnets. On the basis of nature of proteins and the arrangements of amino acid residues of these proteins, the repeated consequential cyclic processes of contraction dynamics worked by neutralizing the negatively charged amino acid residues as per the laws obeyed by Heber-Weiss, Nernst and Fenton reactions. H+-integrated physiological performances in combination with pCa (partial pressure of calcium ion concentrations) and DNFB (2,4 – dinitrofluorobenzene/Sanger’s reagent) concentration gradients at the range of 1mM to 5mM represented velocity inclination in acidic medium which were more actively pronounced if it was compared with alkaline medium where permeabilized stalk exaggerated potential biochemical- shift-perturbation if it was in respect of non-permeabilized live specimens in both artificial as well as in natural medium in different experimental trials under controlled electro-physiological instrumental setup conditions. On the basis of these experimental designs it was confirmed -
Interactions of Foodborne Pathogens with Freeliving Protozoa
Interactions of Foodborne Pathogens with Free-living Protozoa: Potential Consequences for Food Safety Mario J.M. Vaerewijck, Julie Bar´e, Ellen Lambrecht, Koen Sabbe, and Kurt Houf Abstract: Free-living protozoa (FLP) are ubiquitous in natural ecosystems where they play an important role in the reduction of bacterial biomass and the regeneration of nutrients. However, it has been shown that some species such as Acanthamoeba castellanii, Acanthamoeba polyphaga,andTetrahymena pyriformis can act as hosts of pathogenic bacteria. There is a growing concern that FLP might contribute to the maintenance of bacterial pathogens in the environment. In addition to survival and/or replication of bacterial pathogens in FLP, resistance to antimicrobial agents and increased virulence of bacteria after passage through protozoa have been reported. This review presents an overview of FLP in food-associated environments and on foods, and discusses bacterial interactions with FLP, with focus on the foodborne pathogens Campylobacter jejuni, Salmonella spp., Escherichia coli O157:H7, and Listeria monocytogenes. The consequences of these microbial interactions to food safety are evaluated. Keywords: Acanthamoeba, bacteria–FLP interactions, food safety, foodborne pathogens, free-living protozoa (FLP), Tetrahymena Introduction 1978) and Legionella pneumophila (Rowbotham 1980) in amebae. Food safety is a major subject of public concern. Food com- In the meantime, intraprotozoan survival and replication is well panies have to implement food safety systems such as GMP and documented for L. pneumophila, the causal agent of Legionnaires’ HACCP to meet the legal requirement for safe food and to gain disease (a severe pneumonia which can be lethal) and Pontiac consumer confidence. Such systems are based on the control by re- fever (a milder respiratory illness without pneumonia). -
Environmental Impact Assessment Study Report on Rabindra Sarobar Lake Premises, Kolkata
ENVIRONMENTAL IMPACT ASSESSMENT STUDY REPORT ON RABINDRA SAROBAR LAKE PREMISES, KOLKATA FINAL REPORT APRIL, 2017 Published by West Bengal Pollution Control Board on 05 June 2018 1 EIA Report of Rabindra Sarovar, Kolkata Acknowledgement The West Bengal Pollution Control Board wishes to thank the Hon’ble NGT (EZ) for constituting a five member committee consisting of eminent scientists and engineers to study and submit a report on the probable impact of the activities in the Rabindra Sarovar stadium during the nights, connected with ISL matches, on “physical environment”, “biodiversity of the lake environment” and on the survivability scope of the migratory birds and required preventive measures. The West Bengal Pollution control Board extends heartiest thanks to the expert committee members, constituted to undertake Rapid EIA study in the Rabindra Sarovar: Dr. A.K. Sanyal, Chairman, WBBB (Chairman of the Expert Committee), Dr. Ujjal Kumar Mukhopadhyay, Chief Scientist, WBPCB, Dr. Anirban Roy, Research Officer, WBBB , Dr. Rajib Gogoi, Scientist-D, BSI, Kolkata, Dr. Rita Saha, Scientist-D, CPCB, Kolkata Regional Office, Dr. Deepanjan Majumdar, Sr. Scientist, NEERI, Dr. S.I. Kazmi, Scientist, ZSI, Kolkata and Mr. Ashoke Kumar Das, Secretary, KIT, Kolkata (Convenor). The background information and Literature survey provided by West Bengal Biodiversity Board and Botanical Survey of India were intently helpful to prepare this “ EIA Report of Rabindra Sarovar, Kolkata ” . This could not have been possible to prepare and publish this without their great help. We are also thankful to the team from the West Bengal Biodiversity Board for visiting Rabindra Sarobarlake and premises and contributed their effort & energy to prepare general biodiversity documentation, one of the essential source for this report, with their expertise.