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Pollen Evolution and Its Taxonomic Significance in Cuscuta (Dodders, Convolvulaceae)
Plant Syst Evol (2010) 285:83–101 DOI 10.1007/s00606-009-0259-4 ORIGINAL ARTICLE Pollen evolution and its taxonomic significance in Cuscuta (dodders, Convolvulaceae) Mark Welsh • Sasˇa Stefanovic´ • Mihai Costea Received: 12 June 2009 / Accepted: 28 December 2009 / Published online: 27 February 2010 Ó Springer-Verlag 2010 Abstract The pollen morphology of 148 taxa (135 spe- unknown in other Convolvulaceae, has evolved in Cuscuta cies and 13 varieties) of the parasitic plant genus Cuscuta only in two lineages (subg. Monogynella, and clade O of (dodders, Convolvulaceae) was examined using scanning subg. Grammica). Overall, the morphology of pollen electron microscopy. Six quantitative characters were supports Cuscuta as a sister to either the ‘‘bifid-style’’ coded using the gap-weighting method and optimized Convolvulaceae clade (Dicranostyloideae) or to one of the onto a consensus tree constructed from three large-scale members of this clade. Pollen characters alone are insuf- molecular phylogenies of the genus based on nuclear ficient to reconstruct phylogenetic relationships; however, internal transcribed spacer (ITS) and plastid trn-LF palynological information is useful for the species-level sequences. The results indicate that 3-zonocolpate pollen is taxonomy of Cuscuta. ancestral, while grains with more colpi (up to eight) have evolved only in two major lineages of Cuscuta (subg. Keywords Convolvulaceae Á Cuscuta Á Dodders Á Monogynella and clade O of subg. Grammica). Complex Evolution Á Phylogeny Á Pollen morphology Á morphological intergradations occur between species when Scanning electron microscopy Á Taxonomy their tectum is described using the traditional qualitative types—imperforate, perforate, and microreticulate. This continuous variation is better expressed quantitatively as Introduction ‘‘percent perforation,’’ namely the proportion of perforated area (puncta or lumina) from the total tectum surface. -
Challenges to Genome Sequence Dissection in Sweetpotato
Breeding Science 67: 35–40 (2017) doi:10.1270/jsbbs.16186 Review Challenges to genome sequence dissection in sweetpotato Sachiko Isobe*, Kenta Shirasawa and Hideki Hirakawa Kazusa DNA Research Institute, Kazusa-Kamatari 2-6-7, Kisarazu, Chiba 292-0818, Japan The development of next generation sequencing (NGS) technologies has enabled the determination of whole genome sequences in many non-model plant species. However, genome sequencing in sweetpotato (Ipomoea batatas (L.) Lam) is still difficult because of the hexaploid genome structure. Previous studies suggested that a diploid wild relative, I. trifida (H.B.K.) Don., is the most possible ancestor of sweetpotato. Therefore, the ge- netic and genomic features of I. trifida have been studied as a potential reference for sweetpotato. Meanwhile, several research groups have begun the challenging task of directly sequencing the sweetpotato genome. In this manuscript, we review the recent results and activities of large-scale genome and transcriptome analysis related to genome sequence dissection in sweetpotato under the sections as follows: I. trifida genome and tran- script sequencing, genome sequences of I. nil (Japanese morning glory), transcript sequences in sweetpotato, chloroplast sequences, transposable elements and transfer DNA. The recent international activities of de novo whole genome sequencing in sweetpotato are also described. The large-scale publically available genome and transcript sequence resources and the international genome sequencing streams are expected to promote the genome sequence dissection in sweetpotato. Key Words: sweetpotato, Ipomoea, genome, transcript. Introduction tor diploid species are often sequenced and used as a reference for polyploidy species (Bertioli et al. 2016, The development of next generation sequencing (NGS) D’Hont et al. -
Classification of Convolvulaceae: a Phylogenetic Approach
Systematic Botany (2003), 28(4): pp. 791±806 q Copyright 2003 by the American Society of Plant Taxonomists Classi®cation of Convolvulaceae: A Phylogenetic Approach SASÏA STEFANOVICÂ ,1,3 DANIEL F. A USTIN,2 and RICHARD G. OLMSTEAD1 1Department of Botany, University of Washington, Box 355325, Seattle, Washington 98195-5325; 2Conservation and Science Department, Sonora Desert Museum, 2021 N Kinney Road, Tucson, Arizona 85743; 3Author for correspondence, present address: Department of Biology, Indiana University, 1001 E. Third Street, Bloomington, Indiana, 47405 ([email protected]) Communicating Editor: Paul S. Manos ABSTRACT. Because recent molecular studies, based on multiple data sets from all three plant genomes, have indicated mutually congruent, well-resolved, and well-supported relationships within Convolvulaceae (the morning-glory family), a formal reclassi®cation of this family is presented here. Convolvulaceae, a large family of worldwide distribution, exhibiting a rich diversity of morphological characteristics and ecological habitats, are now circumscribed within twelve tribes. A key to these tribes of Convolvulaceae is offered. The group of spiny-pollen bearing Convolvulaceae (forming ``Echinoconiae'') and tribe Cuscuteae are retained essentially in their traditional sense, Cresseae are circumscribed with only minor modi®- cations, Convolvuleae and Erycibeae are recognized in a restricted sense, while Dichondreae and Maripeae are expanded. Also, to produce a tribal taxonomy that better re¯ects phylogenetic relationships, the concept of Poraneae is abandoned as arti®cial, three new tribes are recognized (Aniseieae, Cardiochlamyeae, and Jacquemontieae), and a new tribal status is proposed for the Malagasy endemic Humbertia (Humbertieae). ``Merremieae'' are tentatively retained even though the mono- phyly of this tribe is not certain. -
Comparative Biology of Seed Dormancy-Break and Germination in Convolvulaceae (Asterids, Solanales)
University of Kentucky UKnowledge University of Kentucky Doctoral Dissertations Graduate School 2008 COMPARATIVE BIOLOGY OF SEED DORMANCY-BREAK AND GERMINATION IN CONVOLVULACEAE (ASTERIDS, SOLANALES) Kariyawasam Marthinna Gamage Gehan Jayasuriya University of Kentucky, [email protected] Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Jayasuriya, Kariyawasam Marthinna Gamage Gehan, "COMPARATIVE BIOLOGY OF SEED DORMANCY- BREAK AND GERMINATION IN CONVOLVULACEAE (ASTERIDS, SOLANALES)" (2008). University of Kentucky Doctoral Dissertations. 639. https://uknowledge.uky.edu/gradschool_diss/639 This Dissertation is brought to you for free and open access by the Graduate School at UKnowledge. It has been accepted for inclusion in University of Kentucky Doctoral Dissertations by an authorized administrator of UKnowledge. For more information, please contact [email protected]. ABSTRACT OF DISSERTATION Kariyawasam Marthinna Gamage Gehan Jayasuriya Graduate School University of Kentucky 2008 COMPARATIVE BIOLOGY OF SEED DORMANCY-BREAK AND GERMINATION IN CONVOLVULACEAE (ASTERIDS, SOLANALES) ABSRACT OF DISSERTATION A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the College of Art and Sciences at the University of Kentucky By Kariyawasam Marthinna Gamage Gehan Jayasuriya Lexington, Kentucky Co-Directors: Dr. Jerry M. Baskin, Professor of Biology Dr. Carol C. Baskin, Professor of Biology and of Plant and Soil Sciences Lexington, Kentucky 2008 Copyright © Gehan Jayasuriya 2008 ABSTRACT OF DISSERTATION COMPARATIVE BIOLOGY OF SEED DORMANCY-BREAK AND GERMINATION IN CONVOLVULACEAE (ASTERIDS, SOLANALES) The biology of seed dormancy and germination of 46 species representing 11 of the 12 tribes in Convolvulaceae were compared in laboratory (mostly), field and greenhouse experiments. -
Evolutionary Routes to Biochemical Innovation Revealed by Integrative
RESEARCH ARTICLE Evolutionary routes to biochemical innovation revealed by integrative analysis of a plant-defense related specialized metabolic pathway Gaurav D Moghe1†, Bryan J Leong1,2, Steven M Hurney1,3, A Daniel Jones1,3, Robert L Last1,2* 1Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, United States; 2Department of Plant Biology, Michigan State University, East Lansing, United States; 3Department of Chemistry, Michigan State University, East Lansing, United States Abstract The diversity of life on Earth is a result of continual innovations in molecular networks influencing morphology and physiology. Plant specialized metabolism produces hundreds of thousands of compounds, offering striking examples of these innovations. To understand how this novelty is generated, we investigated the evolution of the Solanaceae family-specific, trichome- localized acylsugar biosynthetic pathway using a combination of mass spectrometry, RNA-seq, enzyme assays, RNAi and phylogenomics in different non-model species. Our results reveal hundreds of acylsugars produced across the Solanaceae family and even within a single plant, built on simple sugar cores. The relatively short biosynthetic pathway experienced repeated cycles of *For correspondence: [email protected] innovation over the last 100 million years that include gene duplication and divergence, gene loss, evolution of substrate preference and promiscuity. This study provides mechanistic insights into the † Present address: Section of emergence of plant chemical novelty, and offers a template for investigating the ~300,000 non- Plant Biology, School of model plant species that remain underexplored. Integrative Plant Sciences, DOI: https://doi.org/10.7554/eLife.28468.001 Cornell University, Ithaca, United States Competing interests: The authors declare that no Introduction competing interests exist. -
Sweet Potato (Ipomoea Batatas L
Cláudio E. Cartabiano-Leite, et. al. International Journal of Engineering Research and Applications www.ijera.com ISSN: 2248-9622, Vol. 10, Issue 6, (Series-VIII) June 2020, pp. 23-40 RESEARCH ARTICLE OPEN ACCESS Sweet potato (Ipomoea batatas L. Lam) nutritional potential and social relevance: a review Cláudio E. Cartabiano-Leite*, Ornella M. Porcu**, Alicia F. de Casas* * Department of Food Science and Technology, Federal University of Santa Catarina, Itacorubi, Florianópolis/SC, 88034-001, Brazil ** Department of Chemistry, Federal Technological University of Paraná, Via do Conhecimento, Km 1, Bloco V, Pato Branco/PR, 85503-390, Brazil Corresponding author: Cláudio E. Cartabiano-Leite ABSTRACT Sweet potato (Ipomoea batatas (L.) Lam) is a dicotyledonous angiosperm plant which belongs to the Convolvulaceae family and its capable of producing nutritious tuberous roots eaten worldwide. Its origin, as well as the circumstances related to its worldwide dispersion, are pertinent questions and intrigue researchers till nowadays. China is the main sweet potato producing country, and the Asian continent has the largest share of world production. In Brazil, sweet potatoes are specially grown by small farmers and used to domestic market supply. The sweet potato arouses huge interest when considering its nutritional qualities, mainly because it is rich in fibers, micronutrients, and an excellent source of energy for the consumer. The colored pulp cultivars such as yellow, orange, and purple sweet potatoes have in their composition several bioactive compounds such as polyphenols, carotenoids, and anthocyanins. In this regard, the work presents a review of the main aspects related to taxonomy, morphology, history, world production, and Brazilian production, highlighting the nutritional potential and the social relevance of sweet potatoes as a crop. -
From India with Implications for an East Gondwana Origin of Convolvulaceae
Paleocene Ipomoea (Convolvulaceae) from India with implications for an East Gondwana origin of Convolvulaceae Gaurav Srivastavaa, Rakesh C. Mehrotraa, and David L. Dilcherb,1 aBirbal Sahni Institute of Palaeosciences, Lucknow 226 007, India; and bDepartment of Geology, Indiana University, Bloomington, IN 47405 Contributed by David L. Dilcher, April 10, 2018 (sent for review January 17, 2018; reviewed by Nina Lucille Baghai-Riding and Gregory Retallack) The morning glory family, Convolvulaceae, is globally important in Materials and Methods medicine and food crops. The family has worldwide distribution in A collection of 200 angiosperm leaves has been made from the Tura For- a variety of habitats; however, its fossil record is very poorly mation exposed in Nangwalbibra (25° 26′ 47.4″ N; 90° 42′ 28.9″ E), East Garo documented. The current fossil record suggests an origin in North Hills District, Meghalaya (Fig. 1 A and B). Here we describe a fossil leaf America, which is in contrast to molecular data that indicate an morphotype based upon 17 specimens, 2 of which have counterparts. The East Gondwana origin. We report Ipomoea leaves from the late specimens are impressions/compressions. They were prepared with the help Paleocene (Thanetian; 58.7–55.8 million years ago) of India, which of a fine chisel and hammer and then photographed in natural low-angled was a part of East Gondwana during this time. This is the earliest light using a 10-megapixel digital camera (Canon SX110). An attempt was fossil record for both the family Convolvulaceae and the order made to extract cuticle with no success. -
The Evolutionary History of Small Rnas in the Solanaceae
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.26.445884; this version posted May 30, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Title: The Evolutionary History of Small RNAs in the Solanaceae 2 Short Title: Solanaceae Small RNA Evolution 3 4 Patricia Baldrich1,*, Sébastien Bélanger1,*, Shuyao Kong2,*, Suresh Pokhrel1,2,*, Saleh 5 Tamim4,5,*, Chong Teng1, Courtney Schiebout1,6, Sai Guna Ranjan Gurazada4,7, Pallavi 6 Gupta1,8, Parth Patel4,9, Mayumi Nakano1, Ayush Dusia4,10, Blake C. Meyers1,3,#, and 7 Margaret H. Frank1,2,# 8 9 * Contributed equally to the work (in alphabetical order) 10 11 #co-corresponding authors: Blake Meyers ([email protected]) and Margaret 12 Frank ([email protected]) 13 14 1 - Donald Danforth Plant Science Center, St. Louis, MO 63132 15 2 - School of Integrative Plant Science, Cornell University, Ithaca, NY 14853 16 3 - Division of Plant Sciences, University of Missouri, Columbia, MO 65211 17 4 - Center for Bioinformatics and Computational Biology, University of Delaware, 18 Newark DE 19711 19 5 - Current address: Genomics Research Center, AbbVie, North Chicago IL 60064 20 6 - Current address: Dartmouth College 21 7 - Corteva Agriscience, Wilmington, DE 19805 22 8 - Institute for Data Science & Informatics, University of Missouri, Columbia, MO 65211 23 9 - Current address: Johnson & Johnson 24 10 - Current address: VMware Inc. 25 26 Margaret H. Frank, Donald Danforth Plant Science Center, St. -
Voluntary Guidelines for the Conservation and Sustainable Use of Crop Wild Relatives Food Plants
Voluntary Guidelines for the Conservation and Sustainable Use of Crop Wild Relatives Food Plants Crop wild relatives are potential sources of desirable traits for breeding well-adapted varieties while wild food plants constitute important components of the diets of many people worldwide. Voluntary Guidelines Unfortunately, their natural wild habitats are increasingly under threat from both human activities and natural disasters. Habitat for the Conservation loss has a direct, negative impact on the diversity of these valuable and Sustainable resources. These guidelines, intended as reference materials for preparing a National Plan for the Conservation and Sustainable Use of Crop Wild Use of Crop Wild Relatives and Wild Food Plants, will contribute to stemming this continuing loss in diversity. The guidelines are Relatives and Wild therefore a useful tool for development practitioners, researchers, students and policy-makers who work on the conservation and Food Plants sustainable use of these valuable resources. ISBN 978-92-5-109919-3 9 789251 099193 FAO I7788EN/1/09.17 Voluntary Guidelines for the Conservation and Sustainable Use of Crop Wild Relatives and Wild Food Plants Food and Agriculture Organization of the United Nations Rome, 2017 VOLUNTARY GUIDELINES FOR THE CONSERVATION AND SUSTAINABLE USE OF CROP WILD RELATIVES AND WILD FOOD PLANTS The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. -
Operculina Turpethum (Linn.) Silva Manso As a Medicinal Plant Species: a Review on Bioactive Components and Pharmacological Properties Shweta Gupta, Akash Ved
Pharmacogn. Rev. REVIEW ARTICLE A multifaceted peer reviewed journal in the field of Pharmacognosy and Natural Products www.phcogrev.com | www.phcog.net Operculina turpethum (Linn.) Silva Manso as a Medicinal Plant Species: A Review on Bioactive Components and Pharmacological Properties Shweta Gupta, Akash Ved Department of Pharmacy, Goel Institute of Pharmacy and Sciences, Lucknow, Uttar Pradesh, India ABSTRACT Operculina turpethum (Linn.) (OT) Silva Manso belongs to the family Convolvulaceae. This review incorporates literature for the phytochemical and pharmacological profile of OT herb. Exhaustive literature survey was done using all the details on phytochemistry and pharmacology of OT available. This herb was found to be a potent source of bioactive compounds such as α‑ and β‑turpethein, turpethinic acids (A, B, C, D, and E), coumarins, cycloartenol, lanosta‑5‑ene, 24‑methylene‑δ‑5‑lanosterol, α‑ and β‑rhamnose, β‑sitosterol, lupeol, scopoletin, betulin, acrylamide, stigma‑5,22dien‑3‑O‑β‑D‑glucopyr anoside, β‑sitosterol‑β‑D‑glucoside (H‑1), 22,23‑dihydro‑α‑spinosterol‑β‑D‑glucoside (H‑2), and salicylic acid (CH‑2), which are useful in fevers, edema, ascites, anorexia, constipation, hepatosplenomegaly, hemorrhoids, cervical lymphadenitis, fistulas, constipation, chronic gout, fever, bronchitis, ulcers, hemorrhoids, tumors, obesity, jaundice, herpes, induce lacrimation, and other skin disorders. From the aerial parts of OT, four new dammarane‑type saponins that are operculinosides A–D (1–4) were isolated that showed particular hepatoprotective -
Disentangling the Origins of Cultivated Sweet Potato (Ipomoea Batatas (L.) Lam.)
4/20/2017 Disentangling the Origins of Cultivated Sweet Potato (Ipomoea batatas (L.) Lam.) Disentangling the Origins of Cultivated Sweet Potato (Ipomoea batatas (L.) Lam.) Caroline Roullier , Anne Duputié, Paul Wennekes, Laure Benoit, Víctor Manuel Fernández Bringas, Genoveva Rossel, David Tay, Doyle McKey, Vincent Lebot Published: May 27, 2013 https://doi.org/10.1371/journal.pone.0062707 Correction 15 Oct 2013: Roullier C, Duputié A, Wennekes P, Benoit L, Fernández Bringas VM, et al. (2013) Correction: Disentangling the Origins of Cultivated Sweet Potato (Ipomoea batatas (L.) Lam.). PLOS ONE 8(10): 10.1371/annotation/936fe9b441cb494d 87a3a6d9a37c6c68. https://doi.org/10.1371/annotation/936fe9b441cb494d87a3a6d9a37c6c68 | View correction Abstract Sweet potato (Ipomoea batatas (L.) Lam., Convolvulaceae) counts among the most widely cultivated staple crops worldwide, yet the origins of its domestication remain unclear. This hexaploid species could have had either an autopolyploid origin, from the diploid I. trifida, or an allopolyploid origin, involving genomes of I. trifida and I. triloba. We generated molecular genetic data for a broad sample of cultivated sweet potatoes and its diploid and polyploid wild relatives, for noncoding chloroplast and nuclear ITS sequences, and nuclear SSRs. Our data did not support an allopolyploid origin for I. batatas, nor any contribution of I. triloba in the genome of domesticated sweet potato. I. trifida and I. batatas are closely related although they do not share haplotypes. Our data support an autopolyploid origin of sweet potato from the ancestor it shares with I. trifida, which might be similar to currently observed tetraploid wild Ipomoea accessions. -
Comparative Rna-Seq Analysis of Phenotypically Different Sweet Potatoes (Ipomoea Batatas [L.] Lam)
COMPARATIVE RNA-SEQ ANALYSIS OF PHENOTYPICALLY DIFFERENT SWEET POTATOES (IPOMOEA BATATAS [L.] LAM) by ELIZABETH FIEDLER A THESIS Submitted in partial fulfillment of the requirements for the degree of Master of Science in the Agricultural Sciences Graduate Program of Delaware State University DOVER, DELAWARE May 2019 This Thesis is approved by the following members of the Final Oral Review Committee: Dr. Venu (Kal) Kalavacharla, Committee Chairperson, Department of Agriculture and Natural Resources, Delaware State University Dr. Richard Barczewski, Committee Member, Department of Agriculture and Natural Resources, Delaware State University Dr. Marikis Alvarez, Committee Member, Department of Agriculture and Natural Resources, Delaware State University Dr. Muthusamy Manoharan, External Committee Member, Department of Agriculture, Fisheries and Human Sciences, University of Arkansas at Pine Bluff Comparative RNA-Seq Analysis of Phenotypically Different Sweet Potatoes (Ipomoea batatas [L.] Lam) Elizabeth Fiedler Faculty Advisor: Dr. Venu (Kal) Kalavacharla ABSTRACT Sweet potato is arguably one of Earth’s top ten most important crops. It is relatively low maintenance, packed with essential vitamins and nutrients, and in addition to serving as an effective food crop, it has been suggested for use as a material for synthesizing plastics and as a replacement for corn as a source for bioethanol production. Sweet potatoes are difficult to bring to seed, so most sweet potato plants are grown from slips, which are cuttings from sweet potato vines. This makes it very easy for sweet potato viruses to spread from generation to generation. Currently, virus disease complexes, which are infections of two or more viruses with a synergistic interaction, pose the biggest threat to sweet potato yields.