Development of Sponge Cell Cultures for Biomedical Application
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia
Diversity 2016, 8, 21; doi:10.3390/d8040021 S1 of S3 9 Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia Jane Fromont, Muhammad Azmi Abdul Wahab, Oliver Gomez, Merrick Ekins, Monique Grol and John Norman Ashby Hooper 1. Materials and Methods 1.1. Collation of Sponge Occurrence Data Data of sponge occurrences were collated from databases of the Western Australian Museum (WAM) and Atlas of Living Australia (ALA) [1]. Pilbara sponge data on ALA had been captured in a northern Australian sponge report [2], but with the WAM data, provides a far more comprehensive dataset, in both geographic and taxonomic composition of sponges. Quality control procedures were undertaken to remove obvious duplicate records and those with insufficient or ambiguous species data. Due to differing naming conventions of OTUs by institutions contributing to the two databases and the lack of resources for physical comparison of all OTU specimens, a maximum error of ± 13.5% total species counts was determined for the dataset, to account for potentially unique (differently named OTUs are unique) or overlapping OTUs (differently named OTUs are the same) (157 potential instances identified out of 1164 total OTUs). The amalgamation of these two databases produced a complete occurrence dataset (presence/absence) of all currently described sponge species and OTUs from the region (see Table S1). The dataset follows the new taxonomic classification proposed by [3] and implemented by [4]. The latter source was used to confirm present validities and taxon authorities for known species names. The dataset consists of records identified as (1) described (Linnean) species, (2) records with “cf.” in front of species names which indicates the specimens have some characters of a described species but also differences, which require comparisons with type material, and (3) records as “operational taxonomy units” (OTUs) which are considered to be unique species although further assessments are required to establish their taxonomic status. -
Chapter 13. State of Deep-Sea Coral and Sponge Ecosystems of the U.S
State of Deep‐Sea Coral and Sponge Ecosystems of the Southeast United States Chapter 13 in The State of Deep‐Sea Coral and Sponge Ecosystems of the United States Report Recommended citation: Hourigan TF, Reed J, Pomponi S, Ross SW, David AW, Harter S (2017) State of Deep‐Sea Coral and Sponge Ecosystems of the Southeast United States. In: Hourigan TF, Etnoyer, PJ, Cairns, SD (eds.). The State of Deep‐Sea Coral and Sponge Ecosystems of the United States. NOAA Technical Memorandum NMFS‐OHC‐4, Silver Spring, MD. 60 p. Available online: http://deepseacoraldata.noaa.gov/library. STATE OF THE DEEP‐SEA CORAL AND SPONGE ECOSYSTEMS OF THE SOUTHEAST UNITED STATES Squat lobster perched on Lophelia pertusa colonies with a sponge in the background. Courtesy of NOAA/ USGS. 408 STATE OF THE DEEP‐SEA CORAL AND SPONGE ECOSYSTEMS OF THE SOUTHEAST UNITED STATES STATE OF THE DEEP- SEA CORAL AND Thomas F. Hourigan1*, SPONGE ECOSYSTEMS John Reed2, OF THE SOUTHEAST Shirley Pomponi2, UNITED STATES Steve W. Ross3, Andrew W. David4, and I. Introduction Stacey Harter4 The Southeast U.S. region stretches from the Straits of Florida north to Cape Hatteras, North Carolina, and encompasses the 1 NOAA Deep Sea Coral Southeast U.S. Continental Shelf large marine ecosystem (LME; Research and Technology Carolinian ecoregion) and associated deeper waters of the Blake Program, Office of Habitat Plateau, as well as a small portion of the Caribbean LME off the Conservation, Silver Florida Keys (eastern portion of the Floridian ecoregion). Within Spring, MD * Corresponding Author: U.S. waters, deep‐sea stony coral reefs reach their greatest [email protected] abundance and development in this region (Ross and Nizinski 2007). -
Porifera: Demospongiae: Axinellida: Raspailiidae) from Deep Seamounts of the Western Pacific
Zootaxa 4410 (2): 379–386 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2018 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4410.2.7 http://zoobank.org/urn:lsid:zoobank.org:pub:14C3B3C0-2DF9-4893-998F-23D96450C1FD A new species of the sponge Raspailia (Raspaxilla) (Porifera: Demospongiae: Axinellida: Raspailiidae) from deep seamounts of the Western Pacific MERRICK EKINS1,2,6, CÉCILE DEBITUS3, DIRK ERPENBECK4 & JOHN N.A. HOOPER1,5 1Queensland Museum, PO Box 3300, South Brisbane 4101, Brisbane, Queensland, Australia 2School of Biological Sciences, University of Queensland, St Lucia, Queensland, 4072 Australia 3LEMAR, IRD, CNRS, IFREMER, UBO, IUEM, rue Dumont d’Urville, 29280 Plouzané, France 4Dept. of Earth and Environmental Sciences and GeoBio-Center, Ludwig-Maximilians-Universität München, Richard-Wagner-Straße 10, 80333 München, Germany 5Griffith Institute for Drug Discovery, Griffith University, Brisbane 4111, Queensland, Australia 6Corresponding Author. E-mail: [email protected] Abstract A new species of Raspailia (Raspaxilla) frondosa sp. nov. is described from the deep seamounts of the Norfolk and New Caledonia Ridges. The morphology of the species resembles that of a frond or a fern, and its unique highly compressed axial skeleton of interlaced spongin fibres without spicules in combination with a radial extra axial skeleton of a perpen- dicular palisade of spicules, differentiate it from all other species of the subgenus. This species is compared -
Sponges on Coral Reefs: a Community Shaped by Competitive Cooperation
Boll. Mus. Ist. Biol. Univ. Genova, 68: 85-148, 2003 (2004) 85 SPONGES ON CORAL REEFS: A COMMUNITY SHAPED BY COMPETITIVE COOPERATION KLAUS RÜTZLER Department of Zoology, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560-0163, USA E-mail: [email protected] ABSTRACT Conservationists and resource managers throughout the world continue to overlook the important role of sponges in reef ecology. This neglect persists for three primary reasons: sponges remain an enigmatic group, because they are difficult to identify and to maintain under laboratory conditions; the few scientists working with the group are highly specialized and have not yet produced authoritative, well-illustrated field manuals for large geographic areas; even studies at particular sites have yet to reach comprehensive levels. Sponges are complex benthic sessile invertebrates that are intimately associated with other animals and numerous plants and microbes. They are specialized filter feeders, require solid substrate to flourish, and have varying growth forms (encrusting to branching erect), which allow single specimens to make multiple contacts with their substrate. Coral reefs and associated communities offer an abundance of suitable substrates, ranging from coral rock to mangrove stilt roots. Owing to their high diversity, large biomass, complex physiology and chemistry, and long evolutionary history, sponges (and their endo-symbionts) play a key role in a host of ecological processes: space competition, habitat provision, predation, chemical defense, primary production, nutrient cycling, nitrification, food chains, bioerosion, mineralization, and cementation. Although certain sponges appear to benefit from the rapid deterioration of coral reefs currently under way in numerous locations as a result of habitat destruction, pollution, water warming, and overexploitation, sponge communities too will die off as soon as their substrates disappear under the forces of bioerosion and water dynamics. -
Novel Natural Product Discovery from Marine Sponges and Their Obligate Symbiotic Organisms
bioRxiv preprint doi: https://doi.org/10.1101/005454; this version posted May 24, 2014. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Mini-review Novel Natural Product Discovery from Marine Sponges and their Obligate Symbiotic Organisms Regina R. Monaco1 * , and Rena F. Quinlan2 1 Hunter College, Department of Computer Sciences, 695 Park Ave, NY, NY 10028, 2 Lehman College, CUNY, 250 Bedford Park Blvd. West, Department of Biological Sciences, Bronx, NY 10468, USA *Address correspondence to: [email protected], Tel.: +1-484-466-6226 Abstract: Discovery of novel natural products is an accepted method for the elucidation of pharmacologically active molecules and drug leads. Best known sources for such discovery have been terrestrial plants and microbes, accounting for about 85% of the approved natural products in pharmaceutical use (1), and about 60% of approved pharmaceuticals and new drug applications annually (2). Discovery in the marine environment has lagged due to the difficulty of exploration in this ecological niche. Exploration began in earnest in the 1950’s, after technological advances such as scuba diving allowed collection of marine organisms, primarily at a depth to about 15m. Natural products from filter feeding marine invertebrates and in particular, sponges, have proven to be a rich source of structurally unique pharmacologically active compounds, with over 16,000 molecules isolated thus far (3, 1) and a continuing pace of discovery at hundreds of novel bioactive molecules per year. -
Guidelines for Inventorying and Monitoring of Dark Habitats
UNITED NATIONS UNEP(DEPI)/MED WG. 431/Inf.12 UNITED NATIONS ENVIRONMENT PROGRAMME MEDITERRANEAN ACTION PLAN 31 March 2017 English Original: English Thirteenth Meeting of Focal Points for Specially Protected Areas Alexandria, Egypt, 9-12 May 2017 Agenda Item 4 : Progress report on activities carried out by SPA/RAC since the twelfth meeting of Focal Points for SPAs Draft Guidelines for Inventoring and Monitoring of Dark Habitats For environmental and economy reasons, this document is printed in a limited number and will not be distributed at the meeting. Delegates are kindly requested to bring their copies to meetings and not to request additional copies. UN Environment/MAP SPA/RAC - Tunis, 2017 Note: The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of Specially Protected Areas Regional Activity Centre (SPA/RAC) and UN Environment concerning the legal status of any State, Territory, city or area, or of its authorities, or concerning the delimitation of their frontiers or boundaries. © 2017 United Nations Environment Programme / Mediterranean Action Plan (UN Environment /MAP) Specially Protected Areas Regional Activity Centre (SPA/RAC) Boulevard du Leader Yasser Arafat B.P. 337 - 1080 Tunis Cedex - Tunisia E-mail: [email protected] The original version of this document was prepared for the Specially Protected Areas Regional Activity Centre (SPA/RAC) by Ricardo Aguilar & Pilar Marín, OCEANA and Vasilis Gerovasileiou, SPA/RAC Consultant with contribution from Tatjana Bakran- Petricioli, Enric Ballesteros, Hocein Bazairi, Carlo Nike Bianchi, Simona Bussotti, Simonepietro Canese, Pierre Chevaldonné, Douglas Evans, Maïa Fourt, Jordi Grinyó, Jean- Georges Harmelin, Alain Jeudy de Grissac, Vesna Mačić, Covadonga Orejas, Maria del Mar Otero, Gérard Pergent, Donat Petricioli, Alfonso A. -
Biodiversity of Sponges (Phylum: Porifera) Off Tuticorin, India
Available online at: www.mbai.org.in doi:10.6024/jmbai.2020.62.2.2250-05 Biodiversity of sponges (Phylum: Porifera) off Tuticorin, India M. S. Varsha1,4 , L. Ranjith2, Molly Varghese1, K. K. Joshi1*, M. Sethulakshmi1, A. Reshma Prasad1, Thobias P. Antony1, M.S. Parvathy1, N. Jesuraj2, P. Muthukrishnan2, I. Ravindren2, A. Paulpondi2, K. P. Kanthan2, M. Karuppuswami2, Madhumita Biswas3 and A. Gopalakrishnan1 1ICAR-Central Marine Fisheries Research Institute, Kochi-682018, Kerala, India. 2Regional Station of ICAR-CMFRI, Tuticorin-628 001, Tamil Nadu, India. 3Ministry of Environment Forest and Climate Change, New Delhi-110003, India. 4Cochin University of Science and Technology, Kochi-682022, India. *Correspondence e-mail: [email protected] Received: 10 Nov 2020 Accepted: 18 Dec 2020 Published: 30 Dec 2020 Original Article Abstract the Vaippar - Tuticorin area. Tuticorin area is characterized by the presence of hard rocky bottom, soft muddy bottom, lagoon The present study deals with 18 new records of sponges found at and lakes. Thiruchendur to Tuticorin region of GOM-up to a Kayalpatnam area and a checklist of sponges reported off Tuticorin distance of 25 nautical miles from shore 8-10 m depth zone-is in the Gulf of Mannar. The new records are Aiolochoria crassa, characterized by a narrow belt of submerged dead coral blocks Axinella damicornis, Clathria (Clathria) prolifera, Clathrina sororcula, which serves as a very good substrate for sponges. Patches of Clathrina sinusarabica, Clathrina coriacea, Cliona delitrix, Colospongia coral ground “Paar” in the 10-23 m depth zone, available in auris, Crella incrustans, Crambe crambe, Hyattella pertusa, Plakortis an area of 10-16 nautical miles from land are pearl oyster beds simplex, Petrosia (Petrosia) ficiformis, Phorbas plumosus, (Mahadevan and Nayar, 1967; Nayar and Mahadevan, 1987) Spheciospongia vesparium, Spirastrella cunctatrix, Xestospongia which also forms a good habitat for sponges. -
Marine Conservation Society Sponges of The
MARINE CONSERVATION SOCIETY SPONGES OF THE BRITISH ISLES (“SPONGE V”) A Colour Guide and Working Document 1992 EDITION, reset with modifications, 2007 R. Graham Ackers David Moss Bernard E. Picton, Ulster Museum, Botanic Gardens, Belfast BT9 5AB. Shirley M.K. Stone Christine C. Morrow Copyright © 2007 Bernard E Picton. CAUTIONS THIS IS A WORKING DOCUMENT, AND THE INFORMATION CONTAINED HEREIN SHOULD BE CONSIDERED TO BE PROVISIONAL AND SUBJECT TO CORRECTION. MICROSCOPIC EXAMINATION IS ESSENTIAL BEFORE IDENTIFICATIONS CAN BE MADE WITH CONFIDENCE. CONTENTS Page INTRODUCTION ................................................................................................................... 1 1. History .............................................................................................................. 1 2. “Sponge IV” .................................................................................................... 1 3. The Species Sheets ......................................................................................... 2 4. Feedback Required ......................................................................................... 2 5. Roles of the Authors ...................................................................................... 3 6. Acknowledgements ........................................................................................ 3 GLOSSARY AND REFERENCE SECTION .................................................................... 5 1. Form ................................................................................................................ -
Final Cruise Report Florida
FINAL CRUISE REPORT FLORIDA SHELF-EDGE EXPEDITION (FLoSEE) DEEPWATER HORIZON OIL SPILL RESPONSE: SURVEY OF DEEPWATER AND MESOPHOTIC REEF ECOSYSTEMS IN THE EASTERN GULF OF MEXICO AND SOUTHEASTERN FLORIDA R/V SEWARD JOHNSON and JOHNSON-SEA-LINK SUBMERSIBLE July 9 – August 9, 2010 Conducted by: Harbor Branch Oceanographic Institute, Florida Atlantic University NOAA Cooperative Institute for Ocean Exploration, Research, and Technology Prepared by: John Reed, HBOI-FAU Stephanie Rogers, HBOI-FAU January 10, 2011 TABLE OF CONTENTS Page Executive Summary 2 Introduction 3 Areas of Operation 3 Study Sites 4 Itinerary 5 Scientific Personnel 6 Methods 7 Ship and Johnson-Sea-Link II Submersible 7 Johnson-Sea-Link Submersible Dive Survey Protocol 8 Objectives 9 Assessment of Deepwater Coral Reefs and Mesophotic Reefs: 10 Stress Responses of Corals and Other Marine Invertebrates Exposed to Oil and Chemical Dispersants 11 Quantitative Assessment of Zooplankton 11 Chemical Analysis of Sessile Benthic Taxa and Biomedical Resources 12 Education and Outreach 13 Results 14 Permits 14 Field Notes Database 14 ArcGIS 15 Collection Sites 15 Samples 15 Submersible Videotapes 16 Sample and Habitat Photographs 16 Sample Documetation 16 Appendices 1. Collection Site Summary 18 2. Collection Site Descriptions 23 3. Species List of Specimens Collected 43 4. Sample Documentation 63 1 EXECUTIVE SUMMARY This report finalizes the compilation of field notes, site notes, and sample data from the Florida Shelf-Edge Expedition (FLoSEE), July 9-August 9, 2010, that was conducted by Harbor Branch Oceanographic Institute, Florida Atlantic University (HBOI-FAU) as part of the Year 2 science plan for the Cooperative Institute for Ocean Exploration, Research, and Technology (CIOERT). -
Community Composition and Functional Prediction of Prokaryotes Associated with Sympatric Sponge Species of Southwestern Atlantic Coast C
www.nature.com/scientificreports OPEN Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast C. C. P. Hardoim1*, A. C. M. Ramaglia1, G. Lôbo‑Hajdu2 & M. R. Custódio3 Prokaryotes contribute to the health of marine sponges. However, there is lack of data on the assembly rules of sponge‑associated prokaryotic communities, especially for those inhabiting biodiversity hotspots, such as ecoregions between tropical and warm temperate southwestern Atlantic waters. The sympatric species Aplysina caissara, Axinella corrugata, and Dragmacidon reticulatum were collected along with environmental samples from the north coast of São Paulo (Brazil). Overall, 64 prokaryotic phyla were detected; 51 were associated with sponge species, and the dominant were Proteobacteria, Bacteria (unclassifed), Cyanobacteria, Crenarchaeota, and Chlorofexi. Around 64% and 89% of the unclassifed operational taxonomical units (OTUs) associated with Brazilian sponge species showed a sequence similarity below 97%, with sequences in the Silva and NCBI Type Strain databases, respectively, indicating the presence of a large number of unidentifed taxa. The prokaryotic communities were species‑specifc, ranging 56%–80% of the OTUs and distinct from the environmental samples. Fifty‑four lineages were responsible for the diferences detected among the categories. Functional prediction demonstrated that Ap. caissara was enriched for energy metabolism and biosynthesis of secondary metabolites, whereas D. reticulatum was enhanced for metabolism of terpenoids and polyketides, as well as xenobiotics’ biodegradation and metabolism. This survey revealed a high level of novelty associated with Brazilian sponge species and that distinct members responsible from the diferences among Brazilian sponge species could be correlated to the predicted functions.