Histidinaemia: a Child and His Family
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Amino Acid Metabolism: Amino Acid Degradation & Synthesis
Amino Acid Metabolism: Amino Acid Degradation & Synthesis Dr. Diala Abu-Hassan, DDS, PhD All images are taken from Lippincott’s Biochemistry textbook except where noted CATABOLISM OF THE CARBON SKELETONS OF AMINO ACIDS The pathways by which AAs are catabolized are organized according to which one (or more) of the seven intermediates is produced from a particular amino acid. GLUCOGENIC AND KETOGENIC AMINO ACIDS The classification is based on which of the seven intermediates are produced during their catabolism (oxaloacetate, pyruvate, α-ketoglutarate, fumarate, succinyl coenzyme A (CoA), acetyl CoA, and acetoacetate). Glucogenic amino acids catabolism yields pyruvate or one of the TCA cycle intermediates that can be used as substrates for gluconeogenesis in the liver and kidney. Ketogenic amino acids catabolism yields either acetoacetate (a type of ketone bodies) or one of its precursors (acetyl CoA or acetoacetyl CoA). Other ketone bodies are 3-hydroxybutyrate and acetone Amino acids that form oxaloacetate Hydrolysis Transamination Amino acids that form α-ketoglutarate via glutamate 1. Glutamine is converted to glutamate and ammonia by the enzyme glutaminase. Glutamate is converted to α-ketoglutarate by transamination, or through oxidative deamination by glutamate dehydrogenase. 2. Proline is oxidized to glutamate. 3. Arginine is cleaved by arginase to produce Ornithine (in the liver as part of the urea cycle). Ornithine is subsequently converted to α-ketoglutarate. Amino acids that form α-ketoglutarate via glutamate 4. Histidine is oxidatively deaminated by histidase to urocanic acid, which then forms N-formimino glutamate (FIGlu). Individuals deficient in folic acid excrete high amounts of FIGlu in the urine FIGlu excretion test has been used in diagnosing a deficiency of folic acid. -
Pyrrolidone Carboxylic Acid Synthesis in Guinea Pig Epidermis
0022-202X/ 83/ 8102-0122$02.00/0 THE JOURNAL OF INVESTIGATIVE DERMATOLOGY, 81:122-124, 1983 Vol. 81, No.2 Copyright © 1983 by The Williams & Wilkins Co. Printed in U.S.A. Pyrrolidone Carboxylic Acid Synthesis in Guinea Pig Epidermis JoHN G. BARRETT, B.Sc. AND IAN R ScoTT, M.A., PH.D. Environmental Safety Laboratory, Unilever Research, Sharnbrook, Bedford, U. K. To establish the in vivo mechanism of synthesis and MATERIALS AND METHODS accumulation of epidermal pyrrolidone carboxylic acid (PCA), enzymes potentially capable of PCA synthesis Enzyme Assays and Separation of Viable Cells and Stratum have been quantified and located within the guinea pig Corneum epidermis. Intermediates in the synthesis of eHJPCA from a pulse of [3H]glutamine have been identified and All enzyme assays were essentially as described previously [8] except quantified to determine which of the several possible for two modifications. Firstly, the sensitivity of the assays for enzymic PCA formation from glutamine and glutamic acid was increased by metabolic routes occurs in vivo. PCA appears to be syn 3 1 thesized from substrate derived from the breakdown using [G- H] substrate (40-90 JLCi mmol- , Radiochemical Centre, Amersham). PCA was separated from glutamic acid and glutamine on within the stratum corneum of protein synthesized sev a small column (2.0 ml bed volume) of Ag50W-X8 ion-exchange resin eral days earlier. The predominant route is probably via (200-400 mesh; Bio-Rad). Secondly, epidermal homogenates were pre the nonenzymic cyclization of free glutamine liberated pared in 0.5 M Tris-HCl buffer, pH 7.0, then microcentrifuge desalted from this protein. -
Folate Deficiency in the Livers of Diethylnitrosamine Treated Rats1
[CANCER RESEARCH 36, 2775-2779, August 1976] Folate Deficiency in the Livers of Diethylnitrosamine treated Rats1 Yoon Sook Shin Buehring,2 Lionel A. Poirier, and E. L. R. Stokstad Department of Nutritional Sciences, University of California, Berkeley, California 94720 (V. S. S. B., E. L. R. 5,1, and Carcinogen Metabolism and Toxicology Branch, National Cancer Institute, Bethesda, Maryland 20014 fL. A. P.] SUMMARY activities of such agents as 2-acetylaminofluorene (22), N, N-dimethyl-4-aminoazobenzene (7, 19), DENA (27, 28), The effects of diethylnitrosamine on the metabolism of methylcholanthrene (24, 25), and 7,12-dimethyl folic acid and related compounds in rat liver were investi benz(a)anthracene (ii). Furthermore, the lipotropes methi gated. The administration, in the drinking water, of diethyl onine, vitamin B@9,andfolic acid are all prospective targets nitrosamine to rats for 3 weeks led to decreased hepatic . of the electrophilic activated form of 1 or more chemical levels of folate, S-adenosylmethionine, and 5-methyltetra carcinogens (12, 16, 20). The metabolic interrelations hyd rofolate :homocysteine methyltransferase . Liver methyl among the various lipotropes are very complex, and it is enetetrahydrofolate reductase levels were unaffected by ad impossible to alter the tissue levels or metabolism of one ministration of diethylnitrosamine. The polyglutamate frac without simultaneously altering the metabolism of each of tion of hepatic folates obtained from rats treated with dieth the others (3-5, 13, 42). We therefore decided to investigate ylnitrosamine for 3 weeks prior to injection with [3H]folate in detail the mechanism responsible for the folic acid defi contained less radioactivity than did the polyglutamate frac ciency observed in DENA-treated rats. -
Microbial Cell Factories Biomed Central
Microbial Cell Factories BioMed Central Research Open Access Differential gene expression in recombinant Pichia pastoris analysed by heterologous DNA microarray hybridisation Michael Sauer1, Paola Branduardi2, Brigitte Gasser1, Minoska Valli1, Michael Maurer1, Danilo Porro2 and Diethard Mattanovich*1 Address: 1Institute of Applied Microbiology, Department of Biotechnology, University of Natural Resources and Applied Life Sciences, Muthgasse 18, A-1190 Vienna, Austria and 2Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza, 2, I-20126 Milan, Italy Email: Michael Sauer - [email protected]; Paola Branduardi - [email protected]; Brigitte Gasser - [email protected]; Minoska Valli - [email protected]; Michael Maurer - [email protected]; Danilo Porro - [email protected]; Diethard Mattanovich* - [email protected] * Corresponding author Published: 20 December 2004 Received: 26 November 2004 Accepted: 20 December 2004 Microbial Cell Factories 2004, 3:17 doi:10.1186/1475-2859-3-17 This article is available from: http://www.microbialcellfactories.com/content/3/1/17 © 2004 Sauer et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Pichia pastoris is a well established yeast host for heterologous protein expression, however, the physiological and genetic information about this yeast remains scanty. The lack of a published genome sequence renders DNA arrays unavailable, thereby hampering more global investigations of P. pastoris from the beginning. -
Determination of Histidine A-Deaminase in Human Stratum Corneum and Its Absence in Histidinaemia
160 Biochem. J. (1963) 88, 160 Determination of Histidine a-Deaminase in Human Stratum Corneum and its Absence in Histidinaemia By V. G. ZANNONI AND B. N. LA DU National Institute of Arthritis and Metabolic Diseases, National Institutes of Health, U.S. Public Health Service, Bethesda, Md., U.S.A. (Received 27 February 1963) In studies on the nature of the enzymic defect in Assays of histidine a-deaminase and urocanase. For patients with histidinaemia, an inborn error of homogenates ofguinea-pig tissues, the method described by histidine metabolism (La Du, Howell, Jacoby, Tabor & Mehler (1955) was used. The assay for histidine oc-deaminase is based on the accumulation urocanic acid Seegmiller & Zannoni, 1962), it was necessary to of at 277 m,u at pH 9-2. Urocanase does not interfere with the develop a sensitive assay procedure to measure assay for histidine a-deaminase at this pH. Urocanase histidine oc-deaminase (L-histidine ammonia-lyase, activity was measured spectrophotometrically at 277 m,u EC 4.3.1.3), the enzyme that converts histidine by observing the rate of disappearance of urocanic acid at into urocanic acid. The application of this method pH 7-5. has shown that the stratum corneum of normal Because of the turbidity of homogenates of human human skin is a rich source of histidine oc-deamin- stratum corneum, the direct spectrophotometric assay ase. However, this layer in two patients (sibs) could not be used. Control and experimental tubes were with histidinaemia did not contain any detectable incubated with 0 50 ml. of 0 1 M-sodium pyrophosphate buffer, pH 9-2, and 0 05 ml. -
Article the Bee Hemolymph Metabolome: a Window Into the Impact of Viruses on Bumble Bees
Article The Bee Hemolymph Metabolome: A Window into the Impact of Viruses on Bumble Bees Luoluo Wang 1,2, Lieven Van Meulebroek 3, Lynn Vanhaecke 3, Guy Smagghe 2 and Ivan Meeus 2,* 1 Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, China; [email protected] 2 Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium; [email protected], [email protected] 3 Laboratory of Chemical Analysis, Department of Veterinary Public Health and Food Safety, Faculty of Vet- erinary Medicine, Ghent University, Merelbeke, Belgium; [email protected]; [email protected] * Correspondence: [email protected] Selection of the targeted biomarker set: In total we identified 76 metabolites, including 28 amino acids (37%), 11 carbohy- drates (14%), 11 carboxylic acids, 2 TCA intermediates, 4 polyamines, 4 nucleic acids, and 16 compounds from other chemical classes (Table S1). We selected biologically-relevant biomarker candidates based on a three step approach: (1) their expression profile in stand- ardized bees and its relation with viral presence, (2) pathways analysis on significant me- tabolites; and (3) a literature search to identify potential viral specific signatures. Step (1) and (2), pathways analysis on significant metabolites We performed two-way ANOVA with Tukey HSD tests for post-hoc comparisons and used significant metabolites for metabolic pathway analysis using the web-based Citation: Wang, L.L.; Van platform MetaboAnalyst (http://www.metaboanalyst.ca/) in order to get insights in the Meulebroek, L.; Vanhaecke. -
Metabolic Changes in Plants As Indicator for Pesticide Exposure
Metabolic changes in plants as indicator for pesticide exposure A pilot study Pesticide Research no. 146, 2013 Title: Authors & contributors: Metabolic changes in plants as indicator for Strandberg B., Mathiassen S. K., Viant M., Kirwan J., Ludwig C., pesticide exposure Sørensen J. G., Ravn H. W. Publisher: Miljøstyrelsen Strandgade 29 1401 København K www.mst.dk Year: ISBN no. 2013 978-87-92903-57-0 Disclaimer: The Danish Environmental Protection Agency will, when opportunity offers, publish reports and contributions relating to environmental research and development projects financed via the Danish EPA. Please note that publication does not signify that the contents of the reports necessarily reflect the views of the Danish EPA. The reports are, however, published because the Danish EPA finds that the studies represent a valuable contribution to the debate on environmental policy in Denmark. May be quoted provided the source is acknowledged. 2 Metabolic changes in plants as indicator for pesticide exposure Table of contents Preface ...................................................................................................................... 5 Sammenfatning ......................................................................................................... 7 Summary................................................................................................................... 9 1. Introduction ...................................................................................................... 11 1.1 Aim and hypotheses -
Folate Deficiency and Formiminoglutamic Acid Excretion During Chronic Diethylnitrosamine Administration to Rats1
[CANCER RF.SF.ARCH 33, 383-388. February 1973] Folate Deficiency and Formiminoglutamic Acid Excretion during Chronic Diethylnitrosamine Administration to Rats1 Lionel A. Poirier2 and V. Michael Whitehead Institut du Cancer de Montréal,Hôpital Notre-Dame et Départementde Biochimie, Universitéde MontréalIL. A. P.l, and Department of Haematology, and Medii! University Medical Clinic, Montreal General Hospital ¡V.M. W./. Montréal,QuébecCanada SUMMARY restricted to certain constituents of the nucleic acids and proteins (3. 21, 23, 38) and to glycogen (11). Of the 4 Elevated levels of the histidine catabolito essential dietary compounds involved in the transfer of formiminoglutamic acid were excreted into the urine of rats 1-carbon units in vivo, 3 [methionine (19, 28, 32), folie acid that were given both 0.01% diethylnitrosamine in their (13), and vitamin B,2 (16)] can behave as classical drinking water for 1 to 5 weeks and an injection of a loading nucleophiles. Of these nucleophiles, only methionine dose of histidine. Similar histidine loading of control rats that reportedly is attacked in vivo by hepatocarcinogens (23, 24). received no carcinogen did not produce an elevation in urinary The limited quantities and the multiplicity of forms of both formiminoglutamic acid excretion. The elevation in urinary vitamin B12 and folie acid in the liver would make the direct formiminoglutamic acid excretion caused by chronic demonstration of such an interaction in vivo quite difficult. diethylnitrosamine administration was prevented by high Since each of the essential 1-carbon compounds or their dietary levels of the methyl donors, methionine, betaine, and derivatives alters the course of carcinogenesis (9, 18, 22, 24, choline; high dietary levels of folate and vitamin B12, either 31 , 33), the possible interrelationship between alone or in combination, had no significant effect on the hepatocarcinogenesis and the metabolism of 1-carbon elevated formiminoglutamic acid excretion caused by compounds is currently under investigation in these diethylnitrosamine. -
Interpretive Guide
INTERPRETIVE GUIDE Contents INTRODUCTION .........................................................................1 NUTREVAL BIOMARKERS ...........................................................5 Metabolic Analysis Markers ....................................................5 Malabsorption and Dysbiosis Markers .....................................5 Cellular Energy & Mitochondrial Metabolites ..........................6 Neurotransmitter Metabolites ...............................................8 Vitamin Markers ....................................................................9 Toxin & Detoxification Markers ..............................................9 Amino Acids ..........................................................................10 Essential and Metabolic Fatty Acids .........................................13 Cardiovascular Risk ................................................................15 Oxidative Stress Markers ........................................................16 Elemental Markers ................................................................17 Toxic Elements .......................................................................18 INTERPRETATION-AT-A-GLANCE .................................................19 REFERENCES .............................................................................23 INTRODUCTION A shortage of any nutrient can lead to biochemical NutrEval profile evaluates several important biochemical disturbances that affect healthy cellular and tissue pathways to help determine nutrient -
Understanding the Role of Natural Moisturizing Factor in Skin Hydration
FEATURE STORY Understanding the Role of Natural Moisturizing Factor in Skin Hydration Components collectively called natural moisturizing factor (NMF) that occur naturally in the skin can be delivered topically to treat xerotic, dry skin. BY JOSEPH FOWLER, MD, FAAD erosis, or dry skin, is a common condition experi- enced by most people at some point in their lives. The so-called active ingredients in Seasonal xerosis is common during the cold, dry basic OTC moisturizers can be winter months, and evidence shows that xerosis Xbecomes more prevalent with age.1 Many inflammatory categorized into three classes: skin conditions such as atopic dermatitis (AD), irritant emollients, occlusives, contact dermatitis, and psoriasis cause localized areas of and humectants. xerotic skin. In addition, some patients have hereditary disorders, such as ichthyosis, resulting in chronic dry skin (Table 1).2-5 skin hydration.7 Lactate is another humectant used in a Emollients are the cornerstone of the treatment of dry number of moisturizers. More recently, some moisturizing skin conditions6 and are typically delivered in over-the- formulations have included various amino acids, pyrrol- counter (OTC) moisturizers. Today, consumers and derma- idone carboxylic acid (PCA; a potent humectant), and salts. tologists can choose from a plethora of moisturizers. Each The ingredients urea, lactate, amino acids, and PCA are contains a combination of ingredients designed to treat or part of a group of components collectively called natural ameliorate the symptoms of dry -
Gas Chromatography‑Time of Flight/Mass Spectrometry‑Based Metabonomics of Changes in the Urinary Metabolic Profile in Osteoarthritic Rats
EXPERIMENTAL AND THERAPEUTIC MEDICINE 15: 2777-2785, 2018 Gas chromatography‑time of flight/mass spectrometry‑based metabonomics of changes in the urinary metabolic profile in osteoarthritic rats HUI JIANG1,2, JIAN LIU3, XIU-JUAN QIN4, YUAN-YUAN CHEN1, JIA-RONG GAO1, MEI MENG1, YUAN WANG3 and TING WANG4 1Department of Pharmacy, The First Affiliated Hospital of Anhui University of Chinese Medicine, Hefei, Anhui 230031; 2College of Basic Medicine, Anhui Medical University, Hefei, Anhui 230032; 3Department of Rheumatism and Immunology, The First Affiliated Hospital of Anhui University of Chinese Medicine, Hefei, Anhui 230031; 4College of Pharmacy, Anhui University of Chinese Medicine, Hefei, Anhui 230038, P.R. China Received November 19, 2015; Accepted December 12, 2016 DOI: 10.3892/etm.2018.5788 Abstract. The aim of the present study was to explore with the control group, the synovial cell lining of the knee changes in the urinary metabolic spectrum in rats with knee joint exhibited proliferation, inflammatory cell infiltration and osteoarthritis, using gas chromatography‑time of flight/mass collagen fiber hyperplasia in the knee osteoarthritis group. spectrometry (GC‑TOF/MS) to determine the metabonomic A total of 23 potential biomarkers were identified, including disease pathogenesis. Sprague‑Dawley rats were randomly alanine, α-ketoglutarate, asparagine, maltose and glutamine. divided into the control and model groups (n=8/group), and Furthermore, metabolomic pathogenesis of osteoarthritis 20 µl of 4% papain and 0.03 M L-cysteine was injected may be related to disorders of amino acid metabolism, energy into the right knee on days 1, 3 and 7 to establish the knee metabolism, fatty acid metabolism, vitamin B6 metabolism osteoarthritis model. -
Methyltransferase in Normal and Leukemic Leukocytes
Studies on N5-Methyltetrahydrofolate-Homocysteine Methyltransferase in Normal and Leukemic Leukocytes RENATE PEYTREMANN, JANET THORNDiKE, and WInI.AM S. BECK From the Department of Medicine, Harvard Medical School, and the Hematology Research Laboratory of the Massachusetts General Hospital, Boston, Massachusetts 02114 system A B S T R A C T A cobalamin-dependent N5-methyltetra- reducing CH3-FH4 + L-homocysteine hydrofolate-homocysteine methyltransferase (methyl- cobalamin,rcaing SAMsAm transferase) was demonstrated in unfractionated ex- FH4 + methionine. (1) tracts of human normal and leukemic leukocytes. Ac- Analogous enzymes have been characterized in Esche- tivity was substantially reduced in the absence of an richia coli added cobalamin derivative. Presumably, this residual (2-4) and in various cells of animal origin activity reflects the level (5-15). Some evidence suggests that a major function endogeneous of holoenzyme. of the enzyme is the maintenance of Enzyme activity was notably higher in lymphoid cells methionine levels in tissues. According to other evidence, the pathway has an than in myeloid cells. Thus, mean specific activities essential role in producing FH4, which can enter into (+SD) were: chronic lymphocytic leukemia lympho- essential transfers of "one-carbon" units in various normal cytes, 2.15+1.16; lymphocytes, 0.91+0.59; nor- other pathways, e.g., the folate-dependent synthesis of mal mature granulocytes, chronic myelo- 0.15+0.10; thymidylate (16). Doubtless, both views are correct, cytic leukemia granulocytes, barely detectable activity. the relative importance of the two Properties functions differing of leukocyte enzymes resembled those of perhaps under different conditions. methyltransferases previously studied in bacteria and Despite extensive discussion of an hypothesis that other animal cells.