Folate Deficiency in the Livers of Diethylnitrosamine Treated Rats1

Total Page:16

File Type:pdf, Size:1020Kb

Folate Deficiency in the Livers of Diethylnitrosamine Treated Rats1 [CANCER RESEARCH 36, 2775-2779, August 1976] Folate Deficiency in the Livers of Diethylnitrosamine treated Rats1 Yoon Sook Shin Buehring,2 Lionel A. Poirier, and E. L. R. Stokstad Department of Nutritional Sciences, University of California, Berkeley, California 94720 (V. S. S. B., E. L. R. 5,1, and Carcinogen Metabolism and Toxicology Branch, National Cancer Institute, Bethesda, Maryland 20014 fL. A. P.] SUMMARY activities of such agents as 2-acetylaminofluorene (22), N, N-dimethyl-4-aminoazobenzene (7, 19), DENA (27, 28), The effects of diethylnitrosamine on the metabolism of methylcholanthrene (24, 25), and 7,12-dimethyl folic acid and related compounds in rat liver were investi benz(a)anthracene (ii). Furthermore, the lipotropes methi gated. The administration, in the drinking water, of diethyl onine, vitamin B@9,andfolic acid are all prospective targets nitrosamine to rats for 3 weeks led to decreased hepatic . of the electrophilic activated form of 1 or more chemical levels of folate, S-adenosylmethionine, and 5-methyltetra carcinogens (12, 16, 20). The metabolic interrelations hyd rofolate :homocysteine methyltransferase . Liver methyl among the various lipotropes are very complex, and it is enetetrahydrofolate reductase levels were unaffected by ad impossible to alter the tissue levels or metabolism of one ministration of diethylnitrosamine. The polyglutamate frac without simultaneously altering the metabolism of each of tion of hepatic folates obtained from rats treated with dieth the others (3-5, 13, 42). We therefore decided to investigate ylnitrosamine for 3 weeks prior to injection with [3H]folate in detail the mechanism responsible for the folic acid defi contained less radioactivity than did the polyglutamate frac ciency observed in DENA-treated rats. tion obtained from the livers of control rats treated with [3H]folate alone. Similarly, the polyglutamate folate fraction of rat livers that were simultaneously perfused with both MATERIALS AND METHODS diethylnitrosamine and [3H]folate contained less label than the polyglutamate fraction of rat livers perfused with Animals, Diets, and Compounds. Male Sprague-Dawley [3H]folate only. Livers perfused with [2-14C]histidine and rats (Simonsen Laboratories, Gilroy, Calif.) weighing 150 to diethylnitrosamine produced more formiminoglutamate 200 g were used in all experiments. For the chronic experi and less CO2 than livers treated with [2-14C]histidine only. ment, rats were housed singly in a wire-screen-topped cage The changes noted in the hepatic folate metabolism of in a constant-temperature, light-controlled room and were diethylnitrosamine-treated rats resemble those seen in the given a commercial stock diet (Purina rat chow; Purina Co., livers of methyl-deficient rats. St. Louis, Mo.)adlibitum; experimental rats received 0.01% DENA in the drinking water for 3 weeks. In 1 experiment, 1.0% DL-methionine was added to the ground rat chow diet. INTRODUCTION Folate labeled with tritium in the 3'S', and 9 positions (specific activity, ca. 40 Ci/mmole) (Amersham/Searle Previous experiments have demonstrated that the chronic Corp., Arlington Heights, Ill.) and 5-[14C]methyl-H4PteGIu administrationofDENA3 to ratsproduces a folatedeficiency (specific activity, 50 mCi/mmole) (Amersham/Searle) were that can be reversed by the administration of high dietary purified over QAE-Sephadex (Pharmacia Fine Chemicals, levels of the methyl donors, methionine and choline (29). Piscataway, N. J.) before use (6). The [methyl-14C]AdoMet The mechanism of this effect remains unknown. The inter (specific activity, 55 mCi/mmole) (Amersham/Searle) and action between DENA, folic acid, and methionine is impor [2-14Cjhistidine (specific activity, 55 mCi/mmole) (Amer tant because of the role played by the lipotropes in modify sham/Searle) were used without further purification. In ing the activity of several chemical carcinogens. For exam some studies, folate metabolism in perfused livers was pIe, dietary methyl donors appear to diminish the carcino studied. The perfusion method used was that described by genic activity of such agents as dimethylhydrazine (29), Buehring et al. (5). Twenty @.tgofDENA were added first in aflatoxin (21), ethionine (10), and DENA (31). On the other the perfusion medium containing washed human red blood hand, vitamin B12reportedly accelerates the carcinogenic cells and then iO pCi (ca. 0.25 nmole) of [3H]folate or 5 pCi (500 @tmoles)of[2-14C]histidine were added next. After per fusion for 2 or 2.5 hr, livers were washed with ice-cold water 1 This work was supported by USPHS Grant AM-08171 from the NIH. A preliminary report of this study has been published (35). and extracted for folate, AdoMet, histidine, FIGLU, or me 2 Present address: Kinder Klinik der Università t MUnchen, Lindwurm str. 4, thionine. 8 Munich2, W. Germany. 3The abbreviations used are: DENA, diethylnitrosamine; 5-methyl Folate Analyses. The extraction of folates from the livers H,,PteGlu, N'-methyltetrahydrofolic acid ; AdoMet , S-adenosylmethionine; of intact rats was done according to the method described FIGLU, N-formimino-L-glutamate; methylene reductase, N―°-methylene by Shin et al. (36). In the perfusion studies, 40 ml of perfu letrahydrofolate reductase (EC 1.1.1.68); methyltransferase, N'-methyltetra hydrofolate:homocysteine methyltransferase; H4PteGlu, tetrahydrofolic acid. sate were poured into 200 ml boiling 1.0% ascorbate solu Received November 17, 1975; accepted April 26, 1976. tion (pH 6.0); the mixture was heated in a water bath at 95° AUGUST 1976 2775 Downloaded from cancerres.aacrjournals.org on September 23, 2021. © 1976 American Association for Cancer Research. V. S. S. Buehring et al. and cooled in ice, and the precipitate was removed by tated KCIO4.The clear yellowish solution was then chromat centrifugation. All extracts were stored at —19°untilas ographed on Dowex 50W-X8 (Nat form). Step-wise elution sayed. Total folates were determined by microbiological was done with 0.1 M NaCI and 6 N H2S04 or 6 M HCI. The assay according to the method described by Waters and elution was carried out in both cases until the absorbance Mollin (43) and later modified by Tamura et a!. (39). Three was less than 0.03 at 256 nm. Specific radioactivities of the organisms, Lactobacillus casei (ATCC 7469), Streptococcus AdoMet peak were calculated from their UV absorption at faecalis (ATCC 8043), and Pediococcus cerevisiae (ATCC 256 nm and from radioactivity measurements. Material in 8081), were used. The assay procedures forS. faecalis and the 6 NHCI eluate and standard AdoMet migrated identically P. cerevisiae were the same as that for L. casei (39), except on thin-layerandpaper chromatography (15). that, forS. faecalis, 10 ng offolate in 5 ml of inoculum broth Methyltransferase and methylene reductase activities were and 0.1 M sodium-phosphate buffer, pH 6.7, with 0.1% measured in the livers of control and DENA-treated rats. ascorbate, instead of 0.05 M sodium-phosphate buffer, pH Livers were homogenized with 3 volumes of cold 0.05 M 6.1, were used. ForP. cerevisiae, 5 ng of Leucovorin (N5- phosphate buffer, pH 7.2, and were centrifuged at 30,000 x formyltetrahydrofolic acid) were used in the inoculum g for 30 mm. The supernatant was frozen at —19°until broth , the rest of the procedure being the same as that for L. assayed. Just before analysis, part of each sample was casei. A crude conjugase enzyme preparation was made dialyzed 2 hr against 2 liters of 0.05 M phosphate buffer, pH from hog kidney, by use of the method of Eigen and Shock 7.2, at 4°.The methyltransferase was assayed according to man (9). The enzyme assay was done according to the the procedure ofKutzbacheta/. (17). After2 hrof incubation, method of Bird et al. (1). DEAE-cellulose column chroma the end product, [14C]methionine, was separated from the tography with an exponential gradient of 0.01 to 0.5 M remaining substrate 5-['4C]methyl-H4PteGlu on a 0.9- x 3-cm phosphate buffer, pH 6.0 (5), was used for the separation column of Dowex i-Cl (100 to 200 mesh), and radioactivity and identiftcation of different forms of folic acid. Sephadex in the eluatewas counted (17).Methylenetetrahydrofolate G-25 column chromatography with 0.1 M phosphate buffer reductase was assayed in the reverse direction with menadi (pH 7.0) (34) was used for the separation and identification one as the artificial electron acceptor (8). of pteroylpolyglutamates. All the buffers contained 0.2 M 2- [14C]Formaldehyde formed from 5-[14C]methyl-H4PteGlu mercaptoethanol. was determined as the dimedone adduct that was extracted Amino Acid, AdoMet, and Enzyme Determinations. For with toluene (8). studies on the metabolism of histidine, after completion of Measurement of Radioactivity. Radioactivity in liver ex the perfusion, the liver was homogenized with ice-cold dis tracts, perfusate extracts, and column fractions was mea tilled water (i :3, w/v), and protein was precipitated by the sured using, scintillation liquid, 48.48 g PPO and 3.25 g addition of 10 ml 20% sulfosalicylic acid and removed by POPOP dissolved in 11.4 liters toluene for 3 to 4 hr and centrifugation. To 50 ml perfusion medium, iO ml of 20% mixed with 6.6 liters Triton X-100 overnight. sulfosalicylic were added, and precipitated protein was re moved by centrifugation. Aliquots of the supernatant were used for column chromatography and radioactivity determi RESULTS nation. Dowex 50W-X8, 200 to 400 mesh, was used for the chromatography of histidine and its metabolites (2). Five ml In Vivo. The folate contents of the livers of rats receiving of the liver or perfusate extract were applied to the column DENA for 3 weeks were determined microbiologically and (0.9 x 35 cm), and elution was carried out with 100 ml citrate compared with the corresponding values in the livers of buffer (pH 3.25), 100 ml citrate buffer (pH 4.25), and 300 ml control rats (Table 1).
Recommended publications
  • Folate Deficiency and Formiminoglutamic Acid Excretion During Chronic Diethylnitrosamine Administration to Rats1
    [CANCER RF.SF.ARCH 33, 383-388. February 1973] Folate Deficiency and Formiminoglutamic Acid Excretion during Chronic Diethylnitrosamine Administration to Rats1 Lionel A. Poirier2 and V. Michael Whitehead Institut du Cancer de Montréal,Hôpital Notre-Dame et Départementde Biochimie, Universitéde MontréalIL. A. P.l, and Department of Haematology, and Medii! University Medical Clinic, Montreal General Hospital ¡V.M. W./. Montréal,QuébecCanada SUMMARY restricted to certain constituents of the nucleic acids and proteins (3. 21, 23, 38) and to glycogen (11). Of the 4 Elevated levels of the histidine catabolito essential dietary compounds involved in the transfer of formiminoglutamic acid were excreted into the urine of rats 1-carbon units in vivo, 3 [methionine (19, 28, 32), folie acid that were given both 0.01% diethylnitrosamine in their (13), and vitamin B,2 (16)] can behave as classical drinking water for 1 to 5 weeks and an injection of a loading nucleophiles. Of these nucleophiles, only methionine dose of histidine. Similar histidine loading of control rats that reportedly is attacked in vivo by hepatocarcinogens (23, 24). received no carcinogen did not produce an elevation in urinary The limited quantities and the multiplicity of forms of both formiminoglutamic acid excretion. The elevation in urinary vitamin B12 and folie acid in the liver would make the direct formiminoglutamic acid excretion caused by chronic demonstration of such an interaction in vivo quite difficult. diethylnitrosamine administration was prevented by high Since each of the essential 1-carbon compounds or their dietary levels of the methyl donors, methionine, betaine, and derivatives alters the course of carcinogenesis (9, 18, 22, 24, choline; high dietary levels of folate and vitamin B12, either 31 , 33), the possible interrelationship between alone or in combination, had no significant effect on the hepatocarcinogenesis and the metabolism of 1-carbon elevated formiminoglutamic acid excretion caused by compounds is currently under investigation in these diethylnitrosamine.
    [Show full text]
  • Interpretive Guide
    INTERPRETIVE GUIDE Contents INTRODUCTION .........................................................................1 NUTREVAL BIOMARKERS ...........................................................5 Metabolic Analysis Markers ....................................................5 Malabsorption and Dysbiosis Markers .....................................5 Cellular Energy & Mitochondrial Metabolites ..........................6 Neurotransmitter Metabolites ...............................................8 Vitamin Markers ....................................................................9 Toxin & Detoxification Markers ..............................................9 Amino Acids ..........................................................................10 Essential and Metabolic Fatty Acids .........................................13 Cardiovascular Risk ................................................................15 Oxidative Stress Markers ........................................................16 Elemental Markers ................................................................17 Toxic Elements .......................................................................18 INTERPRETATION-AT-A-GLANCE .................................................19 REFERENCES .............................................................................23 INTRODUCTION A shortage of any nutrient can lead to biochemical NutrEval profile evaluates several important biochemical disturbances that affect healthy cellular and tissue pathways to help determine nutrient
    [Show full text]
  • Methyltransferase in Normal and Leukemic Leukocytes
    Studies on N5-Methyltetrahydrofolate-Homocysteine Methyltransferase in Normal and Leukemic Leukocytes RENATE PEYTREMANN, JANET THORNDiKE, and WInI.AM S. BECK From the Department of Medicine, Harvard Medical School, and the Hematology Research Laboratory of the Massachusetts General Hospital, Boston, Massachusetts 02114 system A B S T R A C T A cobalamin-dependent N5-methyltetra- reducing CH3-FH4 + L-homocysteine hydrofolate-homocysteine methyltransferase (methyl- cobalamin,rcaing SAMsAm transferase) was demonstrated in unfractionated ex- FH4 + methionine. (1) tracts of human normal and leukemic leukocytes. Ac- Analogous enzymes have been characterized in Esche- tivity was substantially reduced in the absence of an richia coli added cobalamin derivative. Presumably, this residual (2-4) and in various cells of animal origin activity reflects the level (5-15). Some evidence suggests that a major function endogeneous of holoenzyme. of the enzyme is the maintenance of Enzyme activity was notably higher in lymphoid cells methionine levels in tissues. According to other evidence, the pathway has an than in myeloid cells. Thus, mean specific activities essential role in producing FH4, which can enter into (+SD) were: chronic lymphocytic leukemia lympho- essential transfers of "one-carbon" units in various normal cytes, 2.15+1.16; lymphocytes, 0.91+0.59; nor- other pathways, e.g., the folate-dependent synthesis of mal mature granulocytes, chronic myelo- 0.15+0.10; thymidylate (16). Doubtless, both views are correct, cytic leukemia granulocytes, barely detectable activity. the relative importance of the two Properties functions differing of leukocyte enzymes resembled those of perhaps under different conditions. methyltransferases previously studied in bacteria and Despite extensive discussion of an hypothesis that other animal cells.
    [Show full text]
  • Structure and Function of Metallohydrolases in the Arginase- Deacetylase Family
    University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2016 Structure and Function of Metallohydrolases in the Arginase- Deacetylase Family Yang Hai University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Biochemistry Commons Recommended Citation Hai, Yang, "Structure and Function of Metallohydrolases in the Arginase-Deacetylase Family" (2016). Publicly Accessible Penn Dissertations. 1753. https://repository.upenn.edu/edissertations/1753 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/1753 For more information, please contact [email protected]. Structure and Function of Metallohydrolases in the Arginase-Deacetylase Family Abstract Arginases and deacetylases are metallohydrolases that catalyze two distinct chemical transformations. The arginases catalyze the hydrolysis of the guanidinium group of arginine by using a hydroxide ion 2+ 2+ bridging the binuclear manganese cluster (Mn A-Mn B) for nucleophilic attack. The deacetylases catalyze the hydrolysis of amide bonds by using a mononuclear Zn2+-ion activated water molecule as the nucleophile. Despite the diverse functions, metallohydrolases of the arginase-deacetylase superfamily 2+ share the same characteristic α/β hydrolase core fold and a conserved metal binding site (the Mn B site in arginase corresponds to the catalytic Zn2+ site in deacetylase) which is essential for catalysis in both enzymes. We report crystal structure of formiminoglutamase from the parasitic protozoan Trypanosoma cruzi and confirm that formiminoglutamase is a Mn2+-requiring hydrolase that belongs to the arginase- deacetylase superfamily. We also report the crystal structure of an arginase-like protein from Trypanosoma brucei (TbARG) with unknown function. Although its biological role remains enigmatic, the 2+ evolutionarily more conserved Mn B site can be readily restored in TbARG through side-directed mutagenesis.
    [Show full text]
  • Metabolism and Urinary Excretion of Folates in Hypothyroid Rats Metabolism of Folic Acid and Vitamin B12 Is Enhanced by Hypothyr
    J. Clin. Biochem. Nutr., 13, 87-91, 1992 Metabolism and Urinary Excretion of Folates in Hypothyroid Rats C.P. Parameswaran NAIR, Gomathy VISWANATHAN, and John M. NORONHA* Radiation Biology and Biochemistry Division, Bhabha A tomic Research Center, Bombay 400 085, India (Received March 2, 1992) Summary Hypothyroidism results in decreased urinary excretion of folates leading to enhanced tissue retention of folates. The proportion of polyglutamylfolates, which are better retained by tissues, is elevated in liver, blood, and bone marrow of hypothyroid rats. The hypothyroid condition is discussed in the light of the enhanced proportion of polyglu- tamylfolate cofactors and increased in vivo oxidation of histidine pos- sibly resulting in under-utilization of one-carbon units of the folate pool leading to a decrease in weight gain. Key Words: hypothyroidism, polyglutamylfolates, histidine oxidation Metabolism of folic acid and vitamin B12 is enhanced by hypothyroidism as evidenced by the increased in vivo oxidation of [2-14C] histidine to 14C02 and decreased excretion of formiminoglutamic acid [1], a metabolite of histidine with the 2-carbon of histidine forming the formimino-group; formiminoglutamic acid is metabolized through the folate one-carbon [1-C] pool after conversion to form- iminotetrahydrofolate. The 1-C groups of folate pool, which are freely inter- convertible, are utilized in various biosynthetic reactions; the excess 1-C units are oxidized to CO2 via the 10-formyltetrahydrofolate: NADP oxidoreductase [2]. In hypothyroidism the proportion of nonmethyltetrahydrofolates is increased in liver [1, 3], and urinary excretion of methylmalonic acid is decreased [4]; the disorder also results in increased hepatic folate and vitamin B12content [4, 5] and altered levels of various folate-metabolizing enzymes [3, 6].
    [Show full text]
  • Effect of Vitamin B12 Deficiency on S-Adenosylmethionine Metabolism in Rats
    J. Nutr. Sci. Vitaminol., 35 , 1-9, 1989 Effect of Vitamin B12 Deficiency on S-Adenosylmethionine Metabolism in Rats Tadashi DOI,1 Tetsunori KAWATA,2 Naoto TADANO ,1 Takeshi IIJIMA,1 and Akio MAEKAWA1 1Department of Agricultural Chemistr y, Tokyo University of Agriculture, Setagaya-ku, Tokyo 156, Japan 2Faculty of Education , Okayama University, Tsushimanaka, Okayama 700, Japan (Received July 26, 1988) Summary The effect of vitamin B12 (B12) deficiency on the levels of S - adenosylmethionine (SAM) in tissues and the activities of hepatic me thionine synthase, methionine adenosyltransferase and glycine N - methyltransferase were investigated. The striking depression of me thionine synthase activity was observed in all rats fed the B12-deficient diets with or without methionine supplementation for 150days . The SAM level in liver was decreased by B12 deficiency . However, brain SAM level was not affected. The activities of hepatic methionine adenosyltrans ferase isozymes, ƒ¿-form and ƒÀ-form, were decreased by B12 deficiency . Hepatic glycine N-methyltransferase activity in rats fed the low methionine-B12-deficient diet showed a tendency to lower , although the change the activity was not statistically significant , compared with B12 - supplemented rats. It is proposed that the fall in the activity of hepatic methionine adenosyltransferase may be one of the causes of the decreased hepatic SAM level in B12-deficient rats. Key Words vitamin B12-deficient rats , S-adenosylmethionine, me thionine adenosyltransferase, glycine N-methyltransferase The methylfolate trap hypothesis was first proposed about twenty-five years ago (1, 2). Since then, this hypothesis has provided one of the explanations for the derangement of folate metabolism in vitamin B12 (B12) deficiency.
    [Show full text]
  • Mcqs in BIOCHEMISTRY
    This page intentionally left blank Copyright © 2008, New Age International (P) Ltd., Publishers Published by New Age International (P) Ltd., Publishers All rights reserved. No part of this ebook may be reproduced in any form, by photostat, microfilm, xerography, or any other means, or incorporated into any information retrieval system, electronic or mechanical, without the written permission of the publisher. All inquiries should be emailed to [email protected] ISBN (13) : 978-81-224-2627-4 PUBLISHING FOR ONE WORLD NEW AGE INTERNATIONAL (P) LIMITED, PUBLISHERS 4835/24, Ansari Road, Daryaganj, New Delhi - 110002 Visit us at www.newagepublishers.com Dedicated to PROF. DR. F.V. MANVI SecretarySecretarySecretary KLE Society, BELGAUM KARNATAKA. “To My First Pharmacy teacher with Love” This page intentionally left blank FOREWORD Competitive Examinations are the order of the day. All Colleges conducting professional courses at PG level are admitting students based on common entrance examination, which is of objective type. In Pharmacy, M.Pharm admissions are based on qualifying the GATE enterance examination conducted by Govt. of India. In this book, The author has done good work in preparing several objective questions which help the students to face the subject in the examination with poise and confidence. The book is well balanced and consists of multiple choice questions from all the important topics like carbohydrate metabolism and other important Biochemical aspects. The typesetting and quality of printing is good. The author is also well experienced in taking up this type of work. I recommend this book to all the students preparing for GATE examination and also for Medical and Pharmacy College libraries.
    [Show full text]
  • NAG FS008 99 Assessment-JONI FEB 24, 2002 MODIFIED.Pdf
    Fact Sheet 008 August 1999 Updated March 2002 NUTRITION ADVISORY GROUP HANDBOOK ASSESSMENT OF NUTRITIONAL STATUS OF CAPTIVE AND FREE-RANGING ANIMALS Authors Susan D. Crissey, PhD Mike Maslanka, MS Duane E. Ullrey, PhD Brookfield Zoo Fort Worth Zoological Park Comparative Nutrition Group Chicago Zoological Society 1989 Colonial Parkway Michigan State University Brookfield, IL 60513 Fort Worth, TX 76110 East Lansing, MI 48824 Reviewers David J. Baer, PhD Charlotte Kirk Baer, MS U.S. Department of Agriculture National Research Council Human Nutrition Research Center Board on Agriculture & Natural Resources Beltsville, MD 20705 Washington, DC 20418 The essence of nutritional assessment is to determine the adequacy of the diet so that risk of disease might be limited and productivity and longevity might be enhanced. Knowledge of nutritional status, whether of an individual or of an animal population, is important for evaluation of captive management or quality of the wild habitat. This technical paper reviews some of the techniques for assessing nutritional status and the challenges those assessments present. Methods of Nutritional Assessment To be useful, the methods used for nutritional assessment must be accurate and reproducible, within sustainable cost and convenience limits, and should identify small but significant changes in nutritional status.42 Related factors, such as genetic differences, homeostatic regulation, diurnal variation, stress of capture, infectious disease, and others must be considered because they influence the specificity
    [Show full text]
  • MARTI-ARBONA-DISSERTATION.Pdf (5.556Mb)
    MECHANISTIC CHARACTERIZATION OF MEMBERS OF THE AMIDOHYDROLASE SUPERFAMILY A Dissertation by RICARDO MARTÍ ARBONA Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY December 2006 Major Subject: Chemistry MECHANISTIC CHARACTERIZATION OF MEMBERS OF THE AMIDOHYDROLASE SUPERFAMILY A Dissertation by RICARDO MARTÍ ARBONA Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved by: Chair of Committee, Frank M. Raushel Committee Members, Paul A. Lindahl Eric E. Simanek Jerry Tsai Head of Department, Emile A. Schweikert December 2006 Major Subject: Chemistry iii ABSTRACT Mechanistic Characterization of Members of the Amidohydrolase Superfamily. (December 2006) Ricardo Martí Arbona, B.S., Universidad de Puerto Rico, at Río Piedras Chair of Advisory Committee: Dr. Frank M. Raushel The amidohydrolase superfamily is a functionally diverse group of enzymes found in every organism sequenced to date. The landmark for this superfamily is the conservation of a (/)8-barrel structural fold. Isoaspartyl dipeptidase (IAD) from Escherichia coli catalyzes the hydrolytic cleavage of -aspartyl dipeptides. Structural studies of the wild-type enzyme demonstrate that the active site consists of a binuclear metal center. Bell-shaped pH-rate profiles are observed for all four metal-substituted forms of the wild-type enzyme and the site-directed mutants, E77Q and Y137F. Structural analysis of IAD with the bound substrate and site-directed mutagenesis shows the importance of the side chains of residues Glu-77, Tyr-137, Arg-169, Arg-233, Asp- 285, and Ser-289 in the substrate binding and hydrolysis.
    [Show full text]
  • ORGANIC ACIDS – Methylation Cofactors (Urine)
    ORGANIC ACIDS – Methylation Cofactors (urine) The organic acid test is a nutritional test providing insights into the body's cellular metabolic processes. Urinary organic acids derived from the metabolic conversion of dietary proteins, fats and carbohydrates, in addition to compounds of bacterial origin, provide a unique chemical profile of a patient’s cellular health. The testing procedure measures the overflow or build-up of intermediate organic acid products in the urine, determining where ‘aberrations’ are occurring in metabolic pathways. These biomarkers give an overview of several major systems in the body and an analysis of nutritional deficiencies in the body. The Organic Acids test is the preferred test used in clinical practice as many functional medicine practitioners believe the metabolic panel provides remarkable data about a patient from a simple urine collection. The organic acid tests assess a wide range of cellular and physiological processes including intestinal dysbiosis, energy production, nutrient cofactor requirements and neurotransmitter metabolism. Marked accumulation of specific organic acids detected in urine often signals a metabolic inhibition or block. The metabolic block may be due to a nutrient deficiency, an inherited enzyme deficit, toxic build-up or drug effect. By evaluating organic acid levels and pinpointing the metabolic dysfunctions occurring at the cellular level, a comprehensive, customised treatment strategy can be tailor made for each individual patient. The Ideal Test for Complex Patients Medically unexplained symptoms account for approximately 20% of primary care consultations and 10% of secondary care referrals. The typical symptom clusters including emotional and mental difficulties, allergic reactions, gastrointestinal distress, and urinary tract problems do not fit any traditional disease pattern, nor do they have an agreed upon conventional medical diagnosis.
    [Show full text]
  • Histidinaemia: a Child and His Family
    Arch Dis Child: first published as 10.1136/adc.43.227.62 on 1 February 1968. Downloaded from Arch. Dis. Childh., 1968, 43, 62. Histidinaemia: a Child and His Family A. R. R. CAIN and J. B. HOLTON From the Bristol Royal Hospitalfor Sick Children, and Department of Pathology, Southmead Hospital, Bristol Histidinaemia, an inherited disorder of histidine a histidine load. However, there is biochemical metabolism, was first described by Ghadimi, evidence for a defect in histidase activity, and detailed Partington, and Hunter in 1961. The principal family studies suggest that the child is homozygous metabolic pathway for histidine is through urocanic for the abnormal autosomal recessive gene. acid and formiminoglutamic acid (FIGLU) to glutamic acid (Fig. 1). Zannoni and La Du (1963) Methods demonstrated that histidase, the enzyme necessary Chromatography of amino acids and imidazole for the conversion of histidine to urocanic acid, compounds. Urine was examined by two-dimensional was absent from skin homogenates of patients with paper chromatography to detect amino acids and unusual histidinaemia. The absence of histidase usually imidazole compounds. Urine was desalted using Zeokarb leads to the breakdown of histidine by an alternative 225 (Smith, 1958a). The first solvent system was butanol, acetic acid, water followed by butanol, pyridine, pathway, to imidazolepyruvic acid, imidazoleacetic water. Chromatograms were stained with ninhydrin acid, and imidazolelactic acid. reagent to detect amino acids and Pauly's reagent for The imidazolepyruvic acid thus formed is excreted imidazole compounds. Solvents and staining reagents copyright. in the urine and gives a positive result with the were prepared and used as described by Smith (1958b).
    [Show full text]
  • SUPPORT GUIDE Contents ORGANIC ACIDS OXIDATIVE STRESS MARKERS AMINO ACIDS FATTY ACIDS TOXIC and NUTRIENT ELEMENTS
    & SUPPORT GUIDE Contents ORGANIC ACIDS OXIDATIVE STRESS MARKERS AMINO ACIDS FATTY ACIDS TOXIC AND NUTRIENT ELEMENTS Organic Acids NUTRITIONAL Oxidative Stress NUTRITIONAL Amino Acids Plasma NUTRITIONAL Essential & Metabolic Fatty Acids NUTRITIONAL Elements NUTRITIONAL 2. NutrEval Profile The NutrEval profile is the most comprehensive functional and nutritional assessment available. It is designed to help practitioners identify root causes of dysfunction and treat clinical imbalances that are inhibiting optimal health. This advanced diagnostic tool provides a systems-based approach for clinicians to help their patients overcome chronic conditions and live a healthier life. The NutrEval assesses a broad array of macronutrients and micronutrients, as well as markers that give insight into digestive function, toxic exposure, mitochondrial function, and oxidative stress. It accomplishes this by evaluating organic acids, amino acids, fatty acids, oxidative stress markers, and nutrient & toxic elements. Subpanels of the NutrEval are also available as stand-alone options for a more focused assessment. The NutrEval offers a user-friendly report with clinically actionable results including: • Nutrient recommendations for key vitamins, minerals, amino acids, fatty acids, and digestive support based on a functional evaluation of important biomarkers • Functional pillars with a built-in scoring system to guide therapy around needs for methylation support, toxic exposures, mitochondrial dysfunction, fatty acid imbalances, and oxidative stress • Interpretation-At-A-Glance pages providing educational information on nutrient function, causes and complications of deficiencies, and dietary sources • Dynamic biochemical pathway charts to provide a clear understanding of how specific biomarkers play a role in biochemistry There are various methods of assessing nutrient status, including intracellular, extracellular, direct, and functional measurements.
    [Show full text]