Morphology, Phylogeny and Azaspiracid Profile of Azadinium Poporum (Dinophyceae) from the China Sea

Total Page:16

File Type:pdf, Size:1020Kb

Morphology, Phylogeny and Azaspiracid Profile of Azadinium Poporum (Dinophyceae) from the China Sea See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/236668617 Morphology, phylogeny and azaspiracid profile of Azadinium poporum (Dinophyceae) from the China Sea Article in Harmful Algae · January 2013 DOI: 10.1016/j.hal.2012.11.009 CITATIONS READS 32 298 5 authors, including: Haifeng Gu Zhaohe Luo Third Institute of Oceanography China Third Institute of Oceanography China 48 PUBLICATIONS 420 CITATIONS 17 PUBLICATIONS 86 CITATIONS SEE PROFILE SEE PROFILE Urban Tillmann Alfred Wegener Institute Helmholtz Centre fo… 130 PUBLICATIONS 2,598 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Placing Marine Mixotrophs in Context View project All content following this page was uploaded by Haifeng Gu on 05 February 2017. The user has requested enhancement of the downloaded file. Harmful Algae 21–22 (2013) 64–75 Contents lists available at SciVerse ScienceDirect Harmful Algae jo urnal homepage: www.elsevier.com/locate/hal Morphology, phylogeny and azaspiracid profile of Azadinium poporum (Dinophyceae) from the China Sea a, a b c b, Haifeng Gu *, Zhaohe Luo , Bernd Krock , Mattias Witt , Urban Tillmann * a Third Institute of Oceanography, SOA, Xiamen 361005, China b Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, D-27570 Bremerhaven, Germany c Bruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany A R T I C L E I N F O A B S T R A C T Article history: Azadinium poporum is a small dinoflagellate from the family Amphidomataceae which is known for the Received 28 July 2012 production potential of azaspiracid toxins. A. poporum has been recorded from European and Korean Received in revised form 16 October 2012 waters. Here we present the first report of its occurrence along the coast of China. Morphology of Chinese Accepted 28 November 2012 A. poporum is similar to those from Europe and Korea. Several stalked pyrenoids surrounded by a starch sheath were revealed with light microscopy and confirmed by transmission electron microscopy. Among Keywords: 25 strains from the China Sea we identified two distinct ribotypes (referred to as ribotypes B and C). ITS Azadinium sequences of strains within the same ribotype are identical, whereas ribotype B and C differ from each Azadinium poporum other at 11 positions (98.3% similarity). A. poporum ribotypes B and C type differ from European strains Azaspiracids China (referred to as ribotype A) at 16 and 15 positions (97.5% and 97.7% similarity). The ITS region pairwise Genetic differentiation distance within A. poporum ranged from 0.017 to 0.022. Among all three ribotypes, no hemi- compensatory based changes were found within helix III of ITS indicating that they are conspecific. Azaspiracid profiles were analyzed for six strains and turned out to be unexpectedly diverse. Whereas no AZAs could be detected for one strain, another strain was found to contain a m/z 348 fragment type AZA previously found in a Korean Isolate and traces of two other unknown AZAs of higher masses. A third strain produced a novel AZA with a molecular mass of 871 Da. Three strains were found to contain considerable amounts of toxic AZA-2 as the sole AZA, a finding that might elegantly explain the detection of AZA-2 in sponges in the Sea of Japan and which underline the risk potential of A. poporum blooms with subsequent shellfish intoxication episodes for the Asian Pacific. ß 2012 Elsevier B.V. All rights reserved. 1. Introduction been described as new (Tillmann et al., 2012), and this species is the closest relative of Azadinium based on both molecular and The recently erected dinoflagellate genus Azadinium Elbra¨chter morphological data. Amphidoma and Azadinium are now grouped & Tillmann mainly attracts attention for its production of in the family Amphidomataceae, which forms an independent azaspiracids, a recently discovered group of lipophilic phycotoxins lineage among other monophyletic major groups of the dino- causing human intoxication via mussel consumption. With an phytes. Species of the genus Azadinium have so far been reported epithecal affinity to the Peridiniales and a hypothecal affinity to the from the North Sea (Tillmann et al., 2009, 2010, 2011), the French Gonyaulacales (Tillmann et al., 2009), the systematic position of and Irish coast of the eastern Atlantic (Salas et al., 2011; Ne´zan the genus within the dinoflagellates is not yet clarified. Three et al., 2012), the Argentinean coast (Akselman and Negri, 2012) and species have so far been described, i.e. Azadinium spinosum the Korean coast (Potvin et al., 2011). Nevertheless, the presence of Elbra¨chter & Tillmann, Azadinium obesum Tillmann & Elbra¨chter AZAs appeared to be distributed much more widely, reported in and Azadinium poporum Tillmann & Elbra¨chter (Tillmann et al., Northern Africa, northern Europe, Chile, USA and China (James 2009, 2010, 2011). Recently, Amphidoma caudata Halldal has been et al., 2002; Magdalena et al., 2003; Taleb et al., 2006; Klontz et al., transferred to Azadinium based on both morphology and molecular 2009; Lopez-Rivera et al., 2010; Yao et al., 2010). The discrepancy phylogeny (Ne´zan et al., 2012). Moreover, Amphidoma languida has between the distribution of Azadinium and AZAs suggest that A. spinosum might have a wider distribution, or strains of other Azadinium species could produce AZAs. Initially, A. spinosum was the only species for which AZAs were reported. For A. spinosum * Corresponding authors. strain 3D9, the toxin profile consisted of AZA-1, AZA-2 and an E-mail addresses: [email protected] (H. Gu), [email protected] (U. Tillmann). isomer of AZA-2 (Krock et al., 2009), which was later identified as 1568-9883/$ – see front matter ß 2012 Elsevier B.V. All rights reserved. http://dx.doi.org/10.1016/j.hal.2012.11.009 H. Gu et al. / Harmful Algae 21–22 (2013) 64–75 65 AZA-1 methyl ester and found to be an extraction artifact (Jauffrais coordinates and sample dates of the sites, see Table 1). The et al., 2012). AZA-1 and -2 production was subsequently confirmed sediment samples were stored in the dark at 4 8C until further for A. spinosum strains from Denmark (Tillmann et al., 2011) and treatment. Approximately 2 g of wet sediment were mixed with Ireland (Salas et al., 2011), indicating that production and profile of 20 mL of filtered seawater and sonicated for 2 min (100 W) to known AZAs is a stable characteristic of the species A. spinosum. dislodge detrital particles. The watery slurry was incubated Other related species/strains of Amphidomataceae have been directly in series of small containers in f/2-Si medium (Guillard À2 À1 reported not to contain any of the known azaspiracids. However, and Ryther, 1962) at 20 8C, 90 mE m s under a 12:12 h AZA production within Amphidomataceae probably is much more light:dark cycle (hereafter called ‘‘standard culture conditions’’). complex and diverse; recent evidences indicate the presence of Azadinium cells are characterized by swimming at low speed, new AZAs with a modified substitution pattern in A. poporum and interrupted by short, high-speed ‘jumps’ in various directions A. languida (Krock et al., 2012). North Sea strains and the Korean (Tillmann et al., 2009). Cells exhibiting such a characteristic isolate of A. poporum were found to produce AZAs with a swimming behavior were isolated by means of drawn-out Pasteur characteristic m/z 348-fragment, however, in two different pipettes and established into clonal cultures. Only one strain was variants with different masses in the North Sea strains and the established from one container to guarantee they represent true Korean strain, respectively (Krock et al., 2012). clonal strains. Strains were maintained under standard culture There is increasing evidence that AZAs are present in the Asian conditions. Pacific. In 2009, AZA-2 was isolated from a marine sponge collected off Amami-Oshima Island (southern Japan) (Ueoka et al., 2009). 2.2. Light microscopy (LM) Moreover, AZA1 was detected in shellfish collected in several areas of China (Yao et al., 2010), which encouraged us to search for Live cells were examined under a Zeiss Axio Imager microscope Azadinium species along the coast of China. By incubating sediment (Carl Zeiss, Go¨ ttingen, Germany) equipped with both differential samples we succeeded in obtaining 25 strains of A. poporum; their interference illumination and epifluorescence. Light micrographs morphology were examined in detail, and their partial large were obtained using a Zeiss Axiocam HRc digital camera. subunit (LSU) and internal transcribed spacer regions (ITS1, ITS2 Approximately 1 mL of live, healthy culture in mid exponential and 5.8S rDNA) sequences were compared with those of strains growth phase was transferred to a 1.5 mL microcentrifuge tube, 0 from Europe and Korea. Six of these strains were grown in larger and DAPI (4 ,6-diamidino-2-phenylindole dihydrochloride) stain quantities and analyzed for the presence of AZAs. (Sigma–Aldrich, St. Louis, USA) was added at a final concentration À1 of 10 mg mL . The cells were then incubated in the dark at room 2. Materials and methods temperature for 30 min. The cells were viewed and photographed through a Zeiss Filterset (emission: BP 365-445; beamsplitter: FT 2.1. Sample collection and treatment 395). Cells in mid exponential growth phase were fixed with 5% Lugol’s solution and cell size was measured at 400Â magnifica- Sediment samples were collected in the Bohai Sea, East China tion. Fifty cells were measured for each strain of G60, G64, G66, Sea and South China Sea using a grab sampler (Fig. 1, geographical and G68. Fig. 1. Locations of sampling stations. 66 H. Gu et al. / Harmful Algae 21–22 (2013) 64–75 Table 1 Strains of Azadinium poporum examined in the present study, including collection data and locations.
Recommended publications
  • Ultrastructure and Molecular Phylogenetic Position of a New Marine Sand-Dwelling Dinoflagellate from British Columbia, Canada: Pseudadenoides Polypyrenoides Sp
    European Journal of Phycology ISSN: 0967-0262 (Print) 1469-4433 (Online) Journal homepage: http://www.tandfonline.com/loi/tejp20 Ultrastructure and molecular phylogenetic position of a new marine sand-dwelling dinoflagellate from British Columbia, Canada: Pseudadenoides polypyrenoides sp. nov. (Dinophyceae) Mona Hoppenrath, Naoji Yubuki, Rowena Stern & Brian S. Leander To cite this article: Mona Hoppenrath, Naoji Yubuki, Rowena Stern & Brian S. Leander (2017) Ultrastructure and molecular phylogenetic position of a new marine sand-dwelling dinoflagellate from British Columbia, Canada: Pseudadenoides polypyrenoides sp. nov. (Dinophyceae), European Journal of Phycology, 52:2, 208-224, DOI: 10.1080/09670262.2016.1274788 To link to this article: http://dx.doi.org/10.1080/09670262.2016.1274788 View supplementary material Published online: 03 Mar 2017. Submit your article to this journal Article views: 25 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tejp20 Download by: [The University of British Columbia] Date: 13 April 2017, At: 11:37 EUROPEAN JOURNAL OF PHYCOLOGY, 2017 VOL. 52, NO. 2, 208–224 http://dx.doi.org/10.1080/09670262.2016.1274788 Ultrastructure and molecular phylogenetic position of a new marine sand-dwelling dinoflagellate from British Columbia, Canada: Pseudadenoides polypyrenoides sp. nov. (Dinophyceae) Mona Hoppenratha,b, Naoji Yubukia,c, Rowena Sterna,d and Brian S. Leandera aDepartments of Botany and Zoology,
    [Show full text]
  • Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
    Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae
    [Show full text]
  • A Parasite of Marine Rotifers: a New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae)
    Hindawi Publishing Corporation Journal of Marine Biology Volume 2015, Article ID 614609, 5 pages http://dx.doi.org/10.1155/2015/614609 Research Article A Parasite of Marine Rotifers: A New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae) Fernando Gómez1 and Alf Skovgaard2 1 Laboratory of Plankton Systems, Oceanographic Institute, University of Sao˜ Paulo, Prac¸a do Oceanografico´ 191, Cidade Universitaria,´ 05508-900 Butanta,˜ SP, Brazil 2Department of Veterinary Disease Biology, University of Copenhagen, Stigbøjlen 7, 1870 Frederiksberg C, Denmark Correspondence should be addressed to Fernando Gomez;´ [email protected] Received 11 July 2015; Accepted 27 August 2015 Academic Editor: Gerardo R. Vasta Copyright © 2015 F. Gomez´ and A. Skovgaard. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Dinoflagellate infections have been reported for different protistan and animal hosts. We report, for the first time, the association between a dinoflagellate parasite and a rotifer host, tentatively Synchaeta sp. (Rotifera), collected from the port of Valencia, NW Mediterranean Sea. The rotifer contained a sporangium with 100–200 thecate dinospores that develop synchronically through palintomic sporogenesis. This undescribed dinoflagellate forms a new and divergent fast-evolved lineage that branches amongthe dinokaryotic dinoflagellates. 1. Introduction form independent lineages with no evident relation to other dinoflagellates [12]. In this study, we describe a new lineage of The alveolates (or Alveolata) are a major lineage of protists an undescribed parasitic dinoflagellate that largely diverged divided into three main phyla: ciliates, apicomplexans, and from other known dinoflagellates.
    [Show full text]
  • Multifunctional Polyketide Synthase Genes Identified by Genomic Survey of the Symbiotic Dinoflagellate, Symbiodinium Minutum
    Beedessee et al. BMC Genomics (2015) 16:941 DOI 10.1186/s12864-015-2195-8 RESEARCH ARTICLE Open Access Multifunctional polyketide synthase genes identified by genomic survey of the symbiotic dinoflagellate, Symbiodinium minutum Girish Beedessee1*, Kanako Hisata1, Michael C. Roy2, Noriyuki Satoh1 and Eiichi Shoguchi1* Abstract Background: Dinoflagellates are unicellular marine and freshwater eukaryotes. They possess large nuclear genomes (1.5–245 gigabases) and produce structurally unique and biologically active polyketide secondary metabolites. Although polyketide biosynthesis is well studied in terrestrial and freshwater organisms, only recently have dinoflagellate polyketides been investigated. Transcriptomic analyses have characterized dinoflagellate polyketide synthase genes having single domains. The Genus Symbiodinium, with a comparatively small genome, is a group of major coral symbionts, and the S. minutum nuclear genome has been decoded. Results: The present survey investigated the assembled S. minutum genome and identified 25 candidate polyketide synthase (PKS) genes that encode proteins with mono- and multifunctional domains. Predicted proteins retain functionally important amino acids in the catalytic ketosynthase (KS) domain. Molecular phylogenetic analyses of KS domains form a clade in which S. minutum domains cluster within the protist Type I PKS clade with those of other dinoflagellates and other eukaryotes. Single-domain PKS genes are likely expanded in dinoflagellate lineage. Two PKS genes of bacterial origin are found in the S. minutum genome. Interestingly, the largest enzyme is likely expressed as a hybrid non-ribosomal peptide synthetase-polyketide synthase (NRPS-PKS) assembly of 10,601 amino acids, containing NRPS and PKS modules and a thioesterase (TE) domain. We also found intron-rich genes with the minimal set of catalytic domains needed to produce polyketides.
    [Show full text]
  • Redalyc.A New Record of Azadinium Spinosum (Dinoflagellata) from The
    Revista de Biología Marina y Oceanografía ISSN: 0717-3326 [email protected] Universidad de Valparaíso Chile Hernández-Becerril, David U.; Barón-Campis, Sofía A.; Escobar-Morales, Sergio A new record of Azadinium spinosum (Dinoflagellata) from the tropical Mexican Pacific Revista de Biología Marina y Oceanografía, vol. 47, núm. 3, diciembre, 2012, pp. 553-557 Universidad de Valparaíso Viña del Mar, Chile Available in: http://www.redalyc.org/articulo.oa?id=47925145016 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Revista de Biología Marina y Oceanografía Vol. 47, Nº3: 553-557, diciembre 2012 Research Note A new record of Azadinium spinosum (Dinoflagellata) from the tropical Mexican Pacific Un nuevo registro de Azadinium spinosum (Dinoflagellata) en el Pacífico tropical Mexicano David U. Hernández-Becerril1, Sofía A. Barón-Campis2 and Sergio Escobar-Morales3,4 1Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apdo. postal 70-305, México, D.F. 04510 México. [email protected] 2Instituto Nacional de Pesca, SAGARPA, Pitágoras 1320, México, D.F. 03310, México 3Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, México D.F., México 4Unidad de Ciencias del Agua, Centro de Investigación Científica de Yucatán (CICY), Cancún, Q.R. 77500, México Abstract.- The species Azadinium spinosum, a small thecate dinoflagellate, originally and recently described from the North Sea, was found for the first time in the tropical Pacific coast of Mexico.
    [Show full text]
  • VII EUROPEAN CONGRESS of PROTISTOLOGY in Partnership with the INTERNATIONAL SOCIETY of PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting)
    See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283484592 FINAL PROGRAMME AND ABSTRACTS BOOK - VII EUROPEAN CONGRESS OF PROTISTOLOGY in partnership with THE INTERNATIONAL SOCIETY OF PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting) Conference Paper · September 2015 CITATIONS READS 0 620 1 author: Aurelio Serrano Institute of Plant Biochemistry and Photosynthesis, Joint Center CSIC-Univ. of Seville, Spain 157 PUBLICATIONS 1,824 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Use Tetrahymena as a model stress study View project Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica View project All content following this page was uploaded by Aurelio Serrano on 04 November 2015. The user has requested enhancement of the downloaded file. VII ECOP - ISOP Joint Meeting / 1 Content VII ECOP - ISOP Joint Meeting ORGANIZING COMMITTEES / 3 WELCOME ADDRESS / 4 CONGRESS USEFUL / 5 INFORMATION SOCIAL PROGRAMME / 12 CITY OF SEVILLE / 14 PROGRAMME OVERVIEW / 18 CONGRESS PROGRAMME / 19 Opening Ceremony / 19 Plenary Lectures / 19 Symposia and Workshops / 20 Special Sessions - Oral Presentations / 35 by PhD Students and Young Postdocts General Oral Sessions / 37 Poster Sessions / 42 ABSTRACTS / 57 Plenary Lectures / 57 Oral Presentations / 66 Posters / 231 AUTHOR INDEX / 423 ACKNOWLEDGMENTS-CREDITS / 429 President of the Organizing Committee Secretary of the Organizing Committee Dr. Aurelio Serrano
    [Show full text]
  • Scrippsiella Trochoidea (F.Stein) A.R.Loebl
    MOLECULAR DIVERSITY AND PHYLOGENY OF THE CALCAREOUS DINOPHYTES (THORACOSPHAERACEAE, PERIDINIALES) Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) der Fakultät für Biologie der Ludwig-Maximilians-Universität München zur Begutachtung vorgelegt von Sylvia Söhner München, im Februar 2013 Erster Gutachter: PD Dr. Marc Gottschling Zweiter Gutachter: Prof. Dr. Susanne Renner Tag der mündlichen Prüfung: 06. Juni 2013 “IF THERE IS LIFE ON MARS, IT MAY BE DISAPPOINTINGLY ORDINARY COMPARED TO SOME BIZARRE EARTHLINGS.” Geoff McFadden 1999, NATURE 1 !"#$%&'(&)'*!%*!+! +"!,-"!'-.&/%)$"-"!0'* 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2& ")3*'4$%/5%6%*!+1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7! 8,#$0)"!0'*+&9&6"*,+)-08!+ 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 :! 5%*%-"$&0*!-'/,)!0'* 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 ;! "#$!%"&'(!)*+&,!-!"#$!'./+,#(0$1$!2! './+,#(0$1$!-!3+*,#+4+).014!1/'!3+4$0&41*!041%%.5.01".+/! 67! './+,#(0$1$!-!/&"*.".+/!1/'!4.5$%"(4$! 68! ./!5+0&%!-!"#$!"#+*10+%,#1$*10$1$! 69! "#+*10+%,#1$*10$1$!-!5+%%.4!1/'!$:"1/"!'.;$*%."(! 6<! 3+4$0&41*!,#(4+)$/(!-!0#144$/)$!1/'!0#1/0$! 6=! 1.3%!+5!"#$!"#$%.%! 62! /0+),++0'* 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111<=!
    [Show full text]
  • Toxigenic Algae and Associated Phycotoxins in Two Coastal
    Harmful Algae 55 (2016) 191–201 Contents lists available at ScienceDirect Harmful Algae jo urnal homepage: www.elsevier.com/locate/hal Toxigenic algae and associated phycotoxins in two coastal embayments in the Ebro Delta (NW Mediterranean) a,b, c c c Julia A. Busch *, Karl B. Andree , Jorge Dioge`ne , Margarita Ferna´ndez-Tejedor , b b b b b Kerstin Toebe , Uwe John , Bernd Krock , Urban Tillmann , Allan D. Cembella a University of Oldenburg, Institute for Chemistry and Biology of the Marine Environment, 26111 Oldenburg, Germany b Alfred-Wegener-Institut, Helmholtz-Zentrum fu¨r Polar- und Meeresforschung, 27570 Bremerhaven, Germany c IRTA, Ctra Poble Nou km 5,5, 43540 Sant Carles de la Rapita, Tarragona, Spain A R T I C L E I N F O A B S T R A C T Article history: Harmful Algal Bloom (HAB) surveillance is complicated by high diversity of species and associated Received 21 August 2015 phycotoxins. Such species-level information on taxonomic affiliations and on cell abundance and toxin Received in revised form 24 February 2016 content is, however, crucial for effective monitoring, especially of aquaculture and fisheries areas. The Accepted 29 February 2016 aim addressed in this study was to determine putative HAB taxa and related phycotoxins in plankton from aquaculture sites in the Ebro Delta, NW Mediterranean. The comparative geographical distribution Keywords: of potentially harmful plankton taxa was established by weekly field sampling throughout the water HAB surveillance column during late spring–early summer over two years at key stations in Alfacs and Fangar Semi-enclosed embayment embayments within the Ebro Delta.
    [Show full text]
  • Reference Database for the 18S Rrna Gene
    Received: 3 November 2017 | Revised: 15 February 2018 | Accepted: 24 February 2018 DOI: 10.1111/1755-0998.12781 RESOURCE ARTICLE DINOREF: A curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene Solenn Mordret1 | Roberta Piredda1 | Daniel Vaulot2 | Marina Montresor1 | Wiebe H. C. F. Kooistra1 | Diana Sarno1 1Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy Abstract 2Sorbonne Universite, CNRS, UMR Dinoflagellates are a heterogeneous group of protists present in all aquatic ecosys- Adaptation et Diversite en Milieu Marin, tems where they occupy various ecological niches. They play a major role as primary Station Biologique, Roscoff, France producers, but many species are mixotrophic or heterotrophic. Environmental Correspondence metabarcoding based on high-throughput sequencing is increasingly applied to Diana Sarno, Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, assess diversity and abundance of planktonic organisms, and reference databases Italy. are definitely needed to taxonomically assign the huge number of sequences. We Email: [email protected] provide an updated 18S rRNA reference database of dinoflagellates: DINOREF. Funding information Sequences were downloaded from GENBANK and filtered based on stringent quality Italian Ministry of Education, University and Research criteria. All sequences were taxonomically curated, classified taking into account classical morphotaxonomic studies and molecular phylogenies, and linked to a series of metadata. DINOREF includes 1,671 sequences representing 149 genera and 422 species. The taxonomic assignation of 468 sequences was revised. The largest num- ber of sequences belongs to Gonyaulacales and Suessiales that include toxic and symbiotic species. DINOREF provides an opportunity to test the level of taxonomic resolution of different 18S barcode markers based on a large number of sequences and species.
    [Show full text]
  • Omics Analysis for Dinoflagellates Biology Research
    microorganisms Review Omics Analysis for Dinoflagellates Biology Research Yali Bi 1,2,3, Fangzhong Wang 4,* and Weiwen Zhang 1,2,3,4,* 1 Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin 300072, China 2 Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin 300072, China 3 Collaborative Innovation Center of Chemical Science and Engineering, Tianjin 300072, China 4 Center for Biosafety Research and Strategy, Tianjin University, Tianjin 300072, China * Correspondence: [email protected] (F.W.); [email protected] (W.Z.); Tel.: +86-22-2740-6394; Fax: +86-22-2740-6364 Received: 9 July 2019; Accepted: 21 August 2019; Published: 23 August 2019 Abstract: Dinoflagellates are important primary producers for marine ecosystems and are also responsible for certain essential components in human foods. However, they are also notorious for their ability to form harmful algal blooms, and cause shellfish poisoning. Although much work has been devoted to dinoflagellates in recent decades, our understanding of them at a molecular level is still limited owing to some of their challenging biological properties, such as large genome size, permanently condensed liquid-crystalline chromosomes, and the 10-fold lower ratio of protein to DNA than other eukaryotic species. In recent years, omics technologies, such as genomics, transcriptomics, proteomics, and metabolomics, have been applied to the study of marine dinoflagellates and have uncovered many new physiological and metabolic characteristics of dinoflagellates. In this article, we review recent application of omics technologies in revealing some of the unusual features of dinoflagellate genomes and molecular mechanisms relevant to their biology, including the mechanism of harmful algal bloom formations, toxin biosynthesis, symbiosis, lipid biosynthesis, as well as species identification and evolution.
    [Show full text]
  • Azadinium Poporum (Dinophyceae) in the Southeast Pacific: Morphology, Molecular Phylogeny, and Azaspiracid Profile Characterization
    Journal of Plankton Research academic.oup.com/plankt J. Plankton Res. (2017) 39(2): 350–367. First published online January 20, 2017 doi:10.1093/plankt/fbw099 Downloaded from https://academic.oup.com/plankt/article/39/2/350/2929416 by guest on 12 October 2020 Identification of Azadinium poporum (Dinophyceae) in the Southeast Pacific: morphology, molecular phylogeny, and azaspiracid profile characterization URBAN TILLMANN1*, NICOLE TREFAULT2, BERND KROCK1, GÉNESIS PARADA-POZO2, RODRIGO DE LA IGLESIA3 AND MÓNICA VÁSQUEZ3 ALFRED WEGENER INSTITUTE, HELMHOLTZ CENTRE FOR POLAR AND MARINE RESEARCH, AM HANDELSHAFEN , D- BREMERHAVEN, GERMANY, CENTER FOR GENOMICS AND BIOINFORMATICS, FACULTY OF SCIENCES, UNIVERSIDAD MAYOR, CAMINO LA PIRÁMIDE , HUECHURABA, SANTIAGO, CHILE AND DEPARTMENT OF MOLECULAR GENETICS AND MICROBIOLOGY, PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE, AV. LIBERTADOR BERNARDO O´HIGGINS , SANTIAGO, CHILE *CORRESPONDING AUTHOR: [email protected] Received November 7, 2016; editorial decision December 21, 2016; accepted December 24, 2016 Corresponding Editor: John Dolan Azaspiracids (AZA), a group of lipophilic phycotoxins, are produced by some species of the marine dinophycean genus Azadinium. AZA have recently been detected in shellfish from the Southeast Pacific, however, AZA-producing species have not been recorded yet from the area. This study is the first record of the genus Azadinium and of the species Azadinium poporum from the Pacific side of South America. Three strains of A. poporum from Chañaral (Northern Chile) comply to the type description of A. poporum by the presence of multiple pyrenoids, in thecal plate details, and in the position of the ventral pore located on the left side of the pore plate. Molecular phylogeny, based on internal transcribed spacer and large subunit ribosomal DNA sequences, revealed that Chilean strains fall in the same ribotype clade as European and strains from New Zealand.
    [Show full text]
  • Harmful Algal Species Fact Sheet: Amphidomataceae
    AMPHIDOMATACEAE 04/16/2018 16:53:19 Page 575 16 Harmful Algal Species Fact Sheets 575 Amphidomataceae Figure 1 LM micrographs of Azadinium spinosum (a), Az. poporum (b), Az. dexteroporum (c) and Amphidoma languida (d). Scale bars = 2 μm. Figure 2 Global records of the four species of Amphidomataceae known to produce azaspiracids (AZA). Table 1 Members of Amphidomataceae and status as AZA producers. AZA producer no AZA found not analysed yet Azadinium spinosum Azadinium obesum Azadinium caudatum var. caudatum Azadinium poporum Azadinium polongum Azadinium luciferelloides Azadinium dexteroporum Azadinium caudatum var. margalefii Amphidoma nucula Amphidoma languida Azadinium dalianense Amphidoma acuminata Azadinium trinitatum Amphidoma curtata Azadinium cuneatum Amphidoma depressa Azadinium concinnum Amphidoma elongata Azadinium zhuanum Amphidoma laticincta Amphidoma parvula Amphidoma obtusa Amphidoma steinii AMPHIDOMATACEAE 04/16/2018 16:53:19 Page 576 576 Harmful Algal Blooms: A Compendium Desk Reference Amphidomataceae General: Azaspiraids (AZA) are a group of lipophilic by a cover plate. Plate details important for species polyether toxins first detected and described in the identification include the presence/absence and/or late 1990s. With the description of Azadinium spi­ location of a single antapical spine and primarily the nosum in 2009, the first source organism has been position of a ventral pore. Morphology, and in identified. Currently, there are four out of 22 species particular the plate tabulation with five different of the genera Azadinium and Amphidoma (merged rows of plates, undoubtedly classified the family in the family Amphidomataceae) that have been Amphidomataceae as a member of the dinophy­ shown to produce AZA. However, it has to be kept in cean subclass Peridiniphycidae (Tillmann et al., mind that there is only a limited number of cultured 2009).
    [Show full text]