Molecular Interaction of Infectious Salmon Anaemia Virus with the Type I IFN System of Atlantic Salmon 137 5.1
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Full Issue PDF Volume 40, Issue 11
Fisheries ISSN: 0363-2415 (Print) 1548-8446 (Online) Journal homepage: http://www.tandfonline.com/loi/ufsh20 Full Issue PDF Volume 40, Issue 11 To cite this article: (2015) Full Issue PDF Volume 40, Issue 11, Fisheries, 40:11, 525-572, DOI: 10.1080/03632415.2015.1115707 To link to this article: http://dx.doi.org/10.1080/03632415.2015.1115707 Published online: 05 Nov 2015. Submit your article to this journal Article views: 147 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=ufsh20 Download by: [Department Of Fisheries] Date: 13 March 2016, At: 23:47 FisheriesVol. 40 • No. 11 • November 2015 Downloaded by [Department Of Fisheries] at 23:47 13 March 2016 How to Thrive in Grad School Are Hermaphroditic Fish More Vulnerable to Fishing? Introduced Populations Help Preclude ESA Listing “I was amazed at how eective these gloves were and how easy they made handling of large-sized fishes.” – Alan Temple* “We were some of the first people to field-test [the gloves]. We used them last spring in our hatcheries to spawn muskies and walleye, and in the field to implant transmitters in muskies, walleyes and trout for telemetry studies. They worked great. We were really impressed.” – Je Hansbarger** · Portable, waterproof, and lightweight · Measuring and tagging made simple · Chemical free handling · Fish can be lawfully released immediately Downloaded by [Department Of Fisheries] at 23:47 13 March 2016 · Rubber gloves Safely immobilize live fish with Smith-Root’s new insulate user FISH HANDLING GLOVE SYSTEM. -
Resolving Cypriniformes Relationships Using an Anchored Enrichment Approach Carla C
Stout et al. BMC Evolutionary Biology (2016) 16:244 DOI 10.1186/s12862-016-0819-5 RESEARCH ARTICLE Open Access Resolving Cypriniformes relationships using an anchored enrichment approach Carla C. Stout1*†, Milton Tan1†, Alan R. Lemmon2, Emily Moriarty Lemmon3 and Jonathan W. Armbruster1 Abstract Background: Cypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world (~4300 described species). Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. In this study we present the first phylogenomic analysis using anchored hybrid enrichment for 172 taxa to represent the order (plus three out-group taxa), which is the largest dataset for the order to date (219 loci, 315,288 bp, average locus length of 1011 bp). Results: Concatenation analysis establishes a robust tree with 97 % of nodes at 100 % bootstrap support. Species tree analysis was highly congruent with the concatenation analysis with only two major differences: monophyly of Cobitoidei and placement of Danionidae. Conclusions: Most major clades obtained in prior molecular studies were validated as monophyletic, and we provide robust resolution for the relationships among these clades for the first time. These relationships can be used as a framework for addressing a variety of evolutionary questions (e.g. phylogeography, polyploidization, diversification, trait evolution, comparative genomics) for which Cypriniformes is ideally suited. Keywords: Fish, High-throughput -
SCIENCE CHINA Revision of Cyprinus Maomingensis Liu 1957
SCIENCE CHINA Earth Sciences • RESEARCH PAPER • July 2015 Vol.58 No.7: 1123–1132 doi: 10.1007/s11430-015-5085-7 Revision of Cyprinus maomingensis Liu 1957 and the first discovery of Procypris-like cyprinid (Teleostei, Pisces) from the late Eocene of South China CHEN GengJiao1,4*, CHANG Mee-Mann2 & LIU HuanZhang3 1 Natural History Museum of Guangxi Zhuang Autonomous Region, Nanning 530012, China; 2 Key Laboratory of Vertebrate Evolutionary and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China; 3 Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; 4 State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China Received August 25, 2014; accepted December 30, 2014; published online May 4, 2015 Fossil cyprinids from the upper part of the upper Eocene Youganwo Formation of Maoming, Guangdong, China were first studied in 1957 by Liu, who referred the only specimen to the genus Cyprinus as a new species, C. maomingensis. And this was suggested as one of the earliest records for fossil cyprinids. Unfortunately, this specimen is poorly preserved and reveals no more morphological information than its serrated last unbranched dorsal and anal fin rays. Recently, some new specimens were unearthed from the same locality, where C. maomingensis was discovered. In addition to the serrated dorsal and anal fin rays, these new materials also show that the pattern and shape of their pharyngeal teeth obviously differ from that of Cyprinus but resemble that of Procypris. However, its number of the branched dorsal fin rays and number of vertebrae are much less than that in Procypris. -
Inland Fisheries Resource Enhancement and Conservation in Asia Xi RAP PUBLICATION 2010/22
RAP PUBLICATION 2010/22 Inland fisheries resource enhancement and conservation in Asia xi RAP PUBLICATION 2010/22 INLAND FISHERIES RESOURCE ENHANCEMENT AND CONSERVATION IN ASIA Edited by Miao Weimin Sena De Silva Brian Davy FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS REGIONAL OFFICE FOR ASIA AND THE PACIFIC Bangkok, 2010 i The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed or recommended by FAO in preference to others of a similar nature that are not mentioned. ISBN 978-92-5-106751-2 All rights reserved. Reproduction and dissemination of material in this information product for educational or other non-commercial purposes are authorized without any prior written permission from the copyright holders provided the source is fully acknowledged. Reproduction of material in this information product for resale or other commercial purposes is prohibited without written permission of the copyright holders. Applications for such permission should be addressed to: Chief Electronic Publishing Policy and Support Branch Communication Division FAO Viale delle Terme di Caracalla, 00153 Rome, Italy or by e-mail to: [email protected] © FAO 2010 For copies please write to: Aquaculture Officer FAO Regional Office for Asia and the Pacific Maliwan Mansion, 39 Phra Athit Road Bangkok 10200 THAILAND Tel: (+66) 2 697 4119 Fax: (+66) 2 697 4445 E-mail: [email protected] For bibliographic purposes, please reference this publication as: Miao W., Silva S.D., Davy B. -
Chinaxiv:201711.01918V1
ChinaXiv合作期刊 第55卷 第3期 古 脊 椎 动 物 学 报 pp. 201-209 2017年7月 VERTEBRATA PALASIATICA figs. 1-2 Cyprinus-like pharyngeal bones and teeth (Teleostei, Cypriniformes, Cyprinidae) from the Early–Middle Oligocene deposits of South China CHEN Geng-Jiao1,2 CEN Li-Di1 LIU Juan3,4 (1 Natural History Museum of Guangxi Zhuang Autonomous Region Nanning 530012, China [email protected]) (2 State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences Nanjing 210008, China) (3 Department of Biological Sciences, University of Alberta Edmonton, Alberta T6G 2E9, Canada) (4 Division of Paleontology, American Museum of Natural History New York NY 10024, USA) Abstract Here we describe †Nanningocyprinus wui gen. et sp. nov, a fossil Cyprinus-like fish from the Early-Middle Oligocene deposits of Langdong, Nanning Basin, Guangxi Province, South China. †Nanningocyprinus wui is represented by a number of pharyngeal bones and teeth. It differs from all other cyprinid fishes in the following character combination: tooth formula —3·2·1, crushing molar-like A1 much larger than A2, only one groove on the grinding surface of A2 and B1 respectively, and the anterior angle of the pharyngeal bone triangular and prominent. The new-found Cyprinus-like fish, along with the previously known Late Eocene †Eoprocypris maomingensis (Procypris-like) and Oligocene †Huashancyprinus robustispinus (Cyprinus-like) from South China, further indicates an early branching and diversification of the Cyprininae (Cyprinidae) in this area. Key words Nanning Basin; Yongning Formation, Oligocene; Cyprinidae, pharyngeal bone and teeth Citation Chen G J, Cen L D, Liu J, 2017. -
Minnows and Molecules: Resolving the Broad and Fine-Scale Evolutionary Patterns of Cypriniformes
Minnows and molecules: resolving the broad and fine-scale evolutionary patterns of Cypriniformes by Carla Cristina Stout A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 7, 2017 Keywords: fish, phylogenomics, population genetics, Leuciscidae, sequence capture Approved by Jonathan W. Armbruster, Chair, Professor of Biological Sciences and Curator of Fishes Jason E. Bond, Professor and Department Chair of Biological Sciences Scott R. Santos, Professor of Biological Sciences Eric Peatman, Associate Professor of Fisheries, Aquaculture, and Aquatic Sciences Abstract Cypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world. Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. The goal of this dissertation is to provide robust support for relationships at various taxonomic levels within Cypriniformes. For the entire order, an anchored hybrid enrichment approach was used to resolve relationships. This resulted in a phylogeny that is largely congruent with previous multilocus phylogenies, but has much stronger support. For members of Leuciscidae, the relationships established using anchored hybrid enrichment were used to estimate divergence times in an attempt to make inferences about their biogeographic history. The predominant lineage of the leuciscids in North America were determined to have entered North America through Beringia ~37 million years ago while the ancestor of the Golden Shiner (Notemigonus crysoleucas) entered ~20–6 million years ago, likely from Europe. Within Leuciscidae, the shiner clade represents genera with much historical taxonomic turbidity. Targeted sequence capture was used to establish relationships in order to inform taxonomic revisions for the clade. -
(Teleostei: Cyprinidae: Danioninae): Phylogenetic
Norén & Kullander, Cogent Biology (2018), 4: 1525857 https://doi.org/10.1080/23312025.2018.1525857 CELL, MOLECULAR & DEVELOPMENTAL BIOLOGY | RESEARCH ARTICLE The enigmatic Betadevario ramachandrani (Teleostei: Cyprinidae: Danioninae): phylogenetic position resolved by mitogenome analysis, with Received: 11 June 2018 Accepted: 14 September 2018 remarks on the prevalence of chimeric First Published: 20 September 2018 *Corresponding author: Michael mitogenomes in GenBank Norén, Swedish Museum of Natural Michael Norén1* and Sven Kullander1 History, P.O. Box 50007, SE-10405, Stockholm, Sweden E-mail: [email protected] Abstract: We present the complete mitochondrial genome and a phylogenetic Reviewing editor: analysis of the danionine cyprinid Betadevario ramachandrani, endemic to the Jason Abernathy, USDA-ARS Western Ghats in India. Bayesian phylogenetic analysis of all available mitochon- Southeast Area, USA drial genomes of Danionina show that B. ramachandrani is the most basal member Additional information is available at the end of the article of a clade also containing Devario, Microdevario and Microrasbora, and this clade is the sister group of Danio. Seven of 20 mitochondrial genomes downloaded from GenBank for phylogenetic analysis were found to be chimeric, including five curated reference genomes, and this did affect our phylogenetic analysis. At least three of these erroneous sequences have been used in other studies. There is reason to suspect that there are numerous chimeric mitogenomes in GenBank. Subjects: Ichthyology; Phylogenetic analysis; Conservation Biology Keywords: DNA barcoding; next generation sequencing; phylogeny 1. Introduction Betadevario ramachandrani Pramod, Fang, Rema Devi, Liao, Indra, Jameela Beevi & Kullander, 2010 is a small (up to 61 mm SL) danionine cyprinid fish which combines morphological characters ABOUT THE AUTHOR PUBLIC INTEREST STATEMENT Dr. -
1 General Overview of Aquaculture
1 General Overview of Aquaculture Definitions The oyster example would fit the definition of What is aquaculture? extensive aquaculture where the culturist has little Aquaculture can be defined in a number of ways. control over the system but merely provides a more The one I have used for many years is: aquaculture suitable habitat for the animals; in this case the is the rearing of aquatic organisms under controlled spreading of oyster shell. The larval oysters (called or semi-controlled conditions. That is a fairly sim spat) may come from natural spawning or may be ple, but comprehensive definition. An abbreviated produced and settled on oyster shell (cultch) in a definition is that aquaculture is: underwater agri- hatchery, which increases the level of interaction culture. The longer of the two definitions can be between the culturist and the target species and broken down into three major components: thus modifies the level of intensity in the overall production process. ● Aquatic refers to a variety of environments, When operating a recirculating system, the aqua including fresh, brackish, marine and hyper culturist exerts a high level of control and the system saline waters. Each environment is defined on is called intensive. Even just placing a culture unit the basis of its salinity (most simply the amount in the environment represents a means of control of salt that is dissolved in the water). Salinity ling the animals that are being reared. Cages and is discussed in some detail in Chapter 4. net pens are examples (see Chapter 3). There are a ● Aquatic organisms refers to any organisms that number of other approaches that lie somewhere in live or can live in water. -
Low Genetic Diversity in Broodstocks of Endangered Chinese Sucker, Myxocyprinus Asiaticus: Implications for Artificial Propagation and Conservation
A peer-reviewed open-access journal ZooKeysLow 792: genetic 117–132 diversity (2018) in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus... 117 doi: 10.3897/zookeys.792.23785 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation Dongqi Liu1,2, Yu Zhou1, Kun Yang1, Xiuyue Zhang1, Yongbai Chen3, Chong Li3, Hua Li4, Zhaobin Song1,5 1 Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University, Chengdu 610065, PR China 2 School of Biological and Chemical Engineering, Panzhihua Univer- sity, Panzhihua 617000 , PR China 3 China Three Gorges Corporation, Beijing 100038, PR China4 Fisheri- es Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 611731, PR China 5 Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, PR China Corresponding author: Zhaobin Song ([email protected]) Academic editor: M.E. Bichuette | Received 31 January 2018 | Accepted 21 September 2018 | Published 23 October 2018 http://zoobank.org/14FC8819-4ABA-4C2D-B713-35C825B8390F Citation: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117–132. https://doi.org/10.3897/zookeys.792.23785 Abstract The releasing program of Chinese sucker (Myxocyprinus asiaticus) has been conducted for years in China. To prevent loss of genetic variation in wild populations, it is important to assess and monitor genetic diversity of broodstocks before release of offspring. -
Phylogenetic Classification of Extant Genera of Fishes of the Order Cypriniformes (Teleostei: Ostariophysi)
Zootaxa 4476 (1): 006–039 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2018 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4476.1.4 http://zoobank.org/urn:lsid:zoobank.org:pub:C2F41B7E-0682-4139-B226-3BD32BE8949D Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei: Ostariophysi) MILTON TAN1,3 & JONATHAN W. ARMBRUSTER2 1Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, IL 61820, USA. 2Department of Biological Sciences, Auburn University, 101 Rouse Life Sciences Building, Auburn, AL 36849, USA. E-mail: [email protected] 3Corresponding author. E-mail: [email protected] Abstract The order Cypriniformes is the most diverse order of freshwater fishes. Recent phylogenetic studies have approached a consensus on the phylogenetic relationships of Cypriniformes and proposed a new phylogenetic classification of family- level groupings in Cypriniformes. The lack of a reference for the placement of genera amongst families has hampered the adoption of this phylogenetic classification more widely. We herein provide an updated compilation of the membership of genera to suprageneric taxa based on the latest phylogenetic classifications. We propose a new taxon: subfamily Esom- inae within Danionidae, for the genus Esomus. Key words: Cyprinidae, Cobitoidei, Cyprinoidei, carps, minnows Introduction The order Cypriniformes is the most diverse order of freshwater fishes, numbering over 4400 currently recognized species (Eschmeyer & Fong 2017), and the species are of great interest in biology, economy, and in culture. Occurring throughout North America, Africa, Europe, and Asia, cypriniforms are dominant members of a range of freshwater habitats (Nelson 2006), and some have even adapted to extreme habitats such as caves and acidic peat swamps (Romero & Paulson 2001; Kottelat et al. -
Phylogenetic Classification of Extant Genera of Fishes of the Order Cypriniformes (Teleostei: Ostariophysi)
Zootaxa 4476 (1): 006–039 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2018 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4476.1.4 http://zoobank.org/urn:lsid:zoobank.org:pub:C2F41B7E-0682-4139-B226-3BD32BE8949D Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei: Ostariophysi) MILTON TAN1,3 & JONATHAN W. ARMBRUSTER2 1Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, IL 61820, USA. 2Department of Biological Sciences, Auburn University, 101 Rouse Life Sciences Building, Auburn, AL 36849, USA. E-mail: [email protected] 3Corresponding author. E-mail: [email protected] Abstract The order Cypriniformes is the most diverse order of freshwater fishes. Recent phylogenetic studies have approached a consensus on the phylogenetic relationships of Cypriniformes and proposed a new phylogenetic classification of family- level groupings in Cypriniformes. The lack of a reference for the placement of genera amongst families has hampered the adoption of this phylogenetic classification more widely. We herein provide an updated compilation of the membership of genera to suprageneric taxa based on the latest phylogenetic classifications. We propose a new taxon: subfamily Esom- inae within Danionidae, for the genus Esomus. Key words: Cyprinidae, Cobitoidei, Cyprinoidei, carps, minnows Introduction The order Cypriniformes is the most diverse order of freshwater fishes, numbering over 4400 currently recognized species (Eschmeyer & Fong 2017), and the species are of great interest in biology, economy, and in culture. Occurring throughout North America, Africa, Europe, and Asia, cypriniforms are dominant members of a range of freshwater habitats (Nelson 2006), and some have even adapted to extreme habitats such as caves and acidic peat swamps (Romero & Paulson 2001; Kottelat et al. -
Complete Mitochondrial DNA Sequence of the Endangered Fish (Bahaba Taipingensis): Mitogenome Characterization and Phylogenetic Implications
A peer-reviewed open-access journal ZooKeys 546:Complete 181–195 mitochondrial (2015) DNA sequence of the endangered fish(Bahaba taipingensis)... 181 doi: 10.3897/zookeys.546.5964 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Complete mitochondrial DNA sequence of the endangered fish (Bahaba taipingensis): Mitogenome characterization and phylogenetic implications Linlin Zhao1, Tianxiang Gao2, Weihua Lu3 1 The First Institute of Oceanography, SOA, Qingdao, Shandong, 266003, P.R. China2 Fishery College, Zhejiang Ocean University, Zhoushan, Zhejiang, 316000, P.R. China 3 Dongguan Bahaba Natural Conser- vation and Management Station, Dongguan, Guangdong, 523002 P.R. China Corresponding author: Tianxiang Gao ([email protected]) Academic editor: C. Baldwin | Received 9 January 2015 | Accepted 9 November 2015 | Published 16 December 2015 http://zoobank.org/4E688C70-A3E6-4EB2-A3AD-AC1651E08FD0 Citation: Zhao L, Gao T, Lu W (2015) Complete mitochondrial DNA sequence of the endangered fish (Bahaba taipingensis): Mitogenome characterization and phylogenetic implications. ZooKeys 546: 181–195. doi: 10.3897/ zookeys.546.5964 Abstract To understand the systematic status of Bahaba taipingensis within Sciaenidae, the complete mitochon- drial genome (mitogenome) sequence of Chinese bahaba has recently been determined by long PCR and primer walking methods. The complete mitochondrial genome is 16500 bp in length and contains 37 mitochondrial genes (13 protein-coding genes, 2 ribosomal RNA genes and 22 transfer RNA genes) as well as a control region (CR) as other bony fishes. Within the control region, we identified the extended termination associated sequence domain (ETAS), the central conserved sequence block domain (CSB-D, SCB-E and CSB-F) and the conserved sequence block domain (CSB-1, CSB-2 and CSB-3).