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Comprehensive Phylogeny of Ray-Finned Fishes (Actinopterygii) Based on Transcriptomic and Genomic Data
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data Lily C. Hughesa,b,1,2, Guillermo Ortía,b,1,2, Yu Huangc,d,1, Ying Sunc,e,1, Carole C. Baldwinb, Andrew W. Thompsona,b, Dahiana Arcilaa,b, Ricardo Betancur-R.b,f, Chenhong Lig, Leandro Beckerh, Nicolás Bellorah, Xiaomeng Zhaoc,d, Xiaofeng Lic,d, Min Wangc, Chao Fangd, Bing Xiec, Zhuocheng Zhoui, Hai Huangj, Songlin Chenk, Byrappa Venkateshl,2, and Qiong Shic,d,2 aDepartment of Biological Sciences, The George Washington University, Washington, DC 20052; bNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560; cShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, Beijing Genomics Institute Academy of Marine Sciences, Beijing Genomics Institute Marine, Beijing Genomics Institute, 518083 Shenzhen, China; dBeijing Genomics Institute Education Center, University of Chinese Academy of Sciences, 518083 Shenzhen, China; eChina National GeneBank, Beijing Genomics Institute-Shenzhen, 518120 Shenzhen, China; fDepartment of Biology, University of Puerto Rico–Rio Piedras, San Juan 00931, Puerto Rico; gKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Ministry of Education, 201306 Shanghai, China; hLaboratorio de Ictiología y Acuicultura Experimental, Universidad Nacional del Comahue–CONICET, 8400 Bariloche, Argentina; iProfessional Committee of Native Aquatic Organisms and Water Ecosystem, China Fisheries Association, 100125 Beijing, China; jCollege of Life Science and Ecology, Hainan Tropical Ocean University, 572022 Sanya, China; kYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 266071 Qingdao, China; and lComparative Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR, Biopolis, 138673 Singapore Edited by Scott V. -
Global Patterns of Ranavirus Detections
NOTE Global patterns of ranavirus detections Jesse L. Brunnera*, Deanna H. Olsonb, Matthew J. Grayc, Debra L. Millerd, and Amanda L.J. Duffuse aSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA; bUSDA Forest Service, Pacific Northwest Research Station, Corvallis, OR 97331-8550, USA; cDepartment of Forestry, Wildlife and Fisheries, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; dCollege of Veterinary Medicine, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; eDepartment of Natural Sciences, Gordon State College, Barnesville, GA 30204, USA *[email protected] Abstract Ranaviruses are emerging pathogens of poikilothermic vertebrates. In 2015 the Global Ranavirus Reporting System (GRRS) was established as a centralized, open access, online database for reports of the presence (and absence) of ranavirus around the globe. The GRRS has multiple data layers (e.g., location, date, host(s) species, and methods of detection) of use to those studying the epidemiol- ogy, ecology, and evolution of this group of viruses. Here we summarize the temporal, spatial, diag- nostic, and host-taxonomic patterns of ranavirus reports in the GRRS. The number, distribution, and host diversity of ranavirus reports have increased dramatically since the mid 1990s, presumably in response to increased interest in ranaviruses and the conservation of their hosts, and also the availability of molecular diagnostics. Yet there are clear geographic and taxonomic biases among the OPEN ACCESS reports. We encourage ranavirus researchers to add their studies to the portal because such collation can provide collaborative opportunities and unique insights to our developing knowledge of this For personal use only. -
The Evolution of the Placenta Drives a Shift in Sexual Selection in Livebearing Fish
LETTER doi:10.1038/nature13451 The evolution of the placenta drives a shift in sexual selection in livebearing fish B. J. A. Pollux1,2, R. W. Meredith1,3, M. S. Springer1, T. Garland1 & D. N. Reznick1 The evolution of the placenta from a non-placental ancestor causes a species produce large, ‘costly’ (that is, fully provisioned) eggs5,6, gaining shift of maternal investment from pre- to post-fertilization, creating most reproductive benefits by carefully selecting suitable mates based a venue for parent–offspring conflicts during pregnancy1–4. Theory on phenotype or behaviour2. These females, however, run the risk of mat- predicts that the rise of these conflicts should drive a shift from a ing with genetically inferior (for example, closely related or dishonestly reliance on pre-copulatory female mate choice to polyandry in conjunc- signalling) males, because genetically incompatible males are generally tion with post-zygotic mechanisms of sexual selection2. This hypoth- not discernable at the phenotypic level10. Placental females may reduce esis has not yet been empirically tested. Here we apply comparative these risks by producing tiny, inexpensive eggs and creating large mixed- methods to test a key prediction of this hypothesis, which is that the paternity litters by mating with multiple males. They may then rely on evolution of placentation is associated with reduced pre-copulatory the expression of the paternal genomes to induce differential patterns of female mate choice. We exploit a unique quality of the livebearing fish post-zygotic maternal investment among the embryos and, in extreme family Poeciliidae: placentas have repeatedly evolved or been lost, cases, divert resources from genetically defective (incompatible) to viable creating diversity among closely related lineages in the presence or embryos1–4,6,11. -
Phylogenetic Relationships Within the Speciose Family Characidae
Oliveira et al. BMC Evolutionary Biology 2011, 11:275 http://www.biomedcentral.com/1471-2148/11/275 RESEARCH ARTICLE Open Access Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling Claudio Oliveira1*, Gleisy S Avelino1, Kelly T Abe1, Tatiane C Mariguela1, Ricardo C Benine1, Guillermo Ortí2, Richard P Vari3 and Ricardo M Corrêa e Castro4 Abstract Background: With nearly 1,100 species, the fish family Characidae represents more than half of the species of Characiformes, and is a key component of Neotropical freshwater ecosystems. The composition, phylogeny, and classification of Characidae is currently uncertain, despite significant efforts based on analysis of morphological and molecular data. No consensus about the monophyly of this group or its position within the order Characiformes has been reached, challenged by the fact that many key studies to date have non-overlapping taxonomic representation and focus only on subsets of this diversity. Results: In the present study we propose a new definition of the family Characidae and a hypothesis of relationships for the Characiformes based on phylogenetic analysis of DNA sequences of two mitochondrial and three nuclear genes (4,680 base pairs). The sequences were obtained from 211 samples representing 166 genera distributed among all 18 recognized families in the order Characiformes, all 14 recognized subfamilies in the Characidae, plus 56 of the genera so far considered incertae sedis in the Characidae. The phylogeny obtained is robust, with most lineages significantly supported by posterior probabilities in Bayesian analysis, and high bootstrap values from maximum likelihood and parsimony analyses. -
An Overview of Plant Resources and Their Economic Uses in Nigeria
Global Advanced Research Journal of Agricultural Science (ISSN: 2315-5094) Vol. 4(2) pp. 042-067, February, 2015. Available online http://garj.org/garjas/index.htm Copyright © 2015 Global Advanced Research Journals Review An overview of plant resources and their economic uses in Nigeria *Kutama 1, A. S., 1Dangora, I. I., 1Aisha, W. 1Auyo, M. I., 2 Sharif, U. 3Umma, M, and 4Hassan, K. Y. 1Department of Biological Sciences, Federal University, Dutse. P.M.B 7156-Nigeria 2Department of Biological Sciences, College of Arts and Sciences, Kano 3Department of Biology, Kano University of Science &Technology , Wudil . 4 Department of Biology, Sa’adatu Rimi College of Education, Kano Accepted 17 February, 2015 Nigeria is an agrarian country blessed with almost uncountable number of plant species; in water, on land e.t.c. Plants are and remain the indispensable gift of nature given to mankind whose uses were discovered by man even before civilization. This paper reviews some important aspects of plants which include their origin, classification, morphology, as well as economic uses especially in the Nigerian context. It is pertinent therefore that students, researchers as well as readers who are interested in plants would find this paper very educative as it explore majority of plant species and their economic uses in Nigeria. Keyword: plant species, economic uses, taxonomy, morphology, Nigeria. INTRODUCTION Evolution of Plant Over 350 million years ago, the first living organism which mosses, hornworts and liverworts. The bryophytes which resembled a plant appeared. It was the blue - green algae represented the basal group in the evolutionary history of (Cyanophyceae) which lived in the sea and can still be plants may have set the stage for the colonization of the found in many water bodies today. -
Siluriformes, Heptapteridae) from Chapada Dos Parecis, Western Brazil, with an Assessment of the Morphological Characters Bearing on Their Phylogenetic Relationships
ARTICLE Two new, remarkably colored species of the Neotropical catfish genus Cetopsorhamdia Eigenmann & Fisher, 1916 (Siluriformes, Heptapteridae) from Chapada dos Parecis, western Brazil, with an assessment of the morphological characters bearing on their phylogenetic relationships Flávio A. Bockmann¹ & Roberto E. Reis² ¹ Universidade de São Paulo (USP), Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Departamento de Biologia (DB), Laboratório de Ictiologia de Ribeirão Preto, Programa de Pós-Graduação em Biologia Comparada. Ribeirão Preto, SP, Brasil. ORCID: http://orcid.org/0000-0002-1200-1487. E-mail: [email protected] ² Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Laboratório de Sistemática de Vertebrados. Porto Alegre, RS, Brasil. ORCID: http://orcid.org/0000-0003-3746-6894. E-mail: [email protected] Abstract. Two new species of heptapterid catfish genus Cetopsorhamdia are described from close localities in western Brazil, at Chapada dos Parecis, an area with extremely high level of endemism. One species is from the upper Rio Madeira system, Rondônia State, and the other from the upper Rio Tapajós system, Mato Grosso State. The two species are diagnosed, among several other features, by their markedly distinctive color patterns, with the former having well-defined quadrangular marks in trunk flanks while the latter bearing irregular, vertical bars along the trunk. The monophyly of Cetopsorhamdia is discussed, with two putative synapomorphies being proposed to support the genus. Potentially informative morphological characters to resolve the internal relationships of the genus are presented and discussed. Despite the striking external differences between the two species herein described, they are found to likely form a clade. -
Siluriformes: Aspredinidae) from Maracaibo Basin, Venezuela: Osteological Description Using High-Resolution Computed Microtomography of a Miniature Species
Neotropical Ichthyology, 15(1): e160143, 2017 Journal homepage: www.scielo.br/ni DOI: 10.1590/1982-0224-20160143 Published online: 30 March 2017 (ISSN 1982-0224) Printed: 31 March 2017 (ISSN 1679-6225) A new species of Hoplomyzon (Siluriformes: Aspredinidae) from Maracaibo Basin, Venezuela: osteological description using high-resolution computed microtomography of a miniature species Tiago P. Carvalho1,2, Roberto E. Reis3 and John P. Friel4 A new miniature species of banjo catfish of the genusHoplomyzon is described from the Lake Maracaibo Basin in Venezuela. The new species is distinguished from all its congeners by the straight anterior margin of the mesethmoid (vs. a medial notch); a smooth and straight ventral surface of the premaxilla (vs. presence of bony knobs on the ventral surface of premaxilla); absence of teeth on dentary (vs. teeth present on dentary); configuration of ventral vertebral processes anterior to anal fin, which are composed of single processes anterior to anal-fin pterygiophore (vs. paired process); presence of several filamentous barbel-like structures on the ventral surface of head of adults (vs. small papillous structures in the ventral surface of head of adults); and 8 anal-fin rays (vs. 6 or 7). An extensive osteological description is made of the holotype using high-resolution x-ray computed microtomography (HRXCT). Keywords: Endemism, Ernstichthys intonsus, Miniaturization, Synapomorphy, Taxonomy. Se describe una nueva especie miniatura de pez banjo perteneciente al género Hoplomyzon, proveniente de tributarios del Lago Maracaibo en Venezuela. La nueva especie se diferencia de sus congéneres por presentar el margen anterior del mesetmoide recto (vs. con una hendidura central); superficie ventral de la premaxila lisa y recta (vs. -
Silvinichthys Pachonensis, a New Catfish from High Altitude, with a Key to the Species of the Genus (Siluriformes: Trichomycteridae)
375 Ichthyol. Explor. Freshwaters, Vol. 27, No. 4, pp. 375-383, 4 figs., 1 tab., December 2016 © 2016 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 Silvinichthys pachonensis, a new catfish from high altitude, with a key to the species of the genus (Siluriformes: Trichomycteridae) Luis Fernández* and Jorge Liotta** Silvinichthys pachonensis, new species, is described from 3103 m asl in the Andean cordillera of San Juan, Argentina, and constitutes the first record of the genus in high altitude. It shares the diagnostic characters of Silvinichthys, but is distinguished from the five named species mainly by the mesethmoid shaft larger than the side of the cornua (vs. shaft smaller than lateral cornua) and the relatively high number (14) of precaudal vertebrae (vs. 8-10 precaudal vertebrae). Additionally, it differs by the combination of the absence of the pelvic fin and girdle, strong abductor musculature, and various osteological, meristic, and morphometric features. Silvinichthys pachonensis is presently known only from the type locality, in an arid region of western central Argentina. Introduction is the second most speciose genus of the Tricho- mycterinae (Trichomycterus 120+ species and Bul- The diversity of fishes in the Andes is very low, lockia, Hatcheria, Eremophilus, Rhizosomichthys one about equal to 5 % of the neotropical lowland species each; Fernández & de Pinna, 2005: 106). ichthyofauna (Schaefer, 2011). Twenty-four fish We herein describe a sixth species of Silvin- families occur in the Andes (Schaefer, 2011) but ichthys, which is also the fifth lacking the pelvic only three genera, Orestias (Cyprinodontidae), girdle and fin. The discovery of this new species Astroblepus (Astroblepidae) and Silvinichthys constitutes the first record of a Silvinichthys at high (Trichomycteridae), are exclusively known from altitude. -
Rediscovery of the Syntypes of Corydoras Meridionalis R
Volume 50(8):91‑95, 2010 RediscoveRy of the syntypes of Corydoras meridionalis R. von iheRing, 1911 (teleostei, siluRifoRmes, callichthyidae) and designation of lectotype heRaldo a. BRitski1,2 andRé l.c. mendonça1 AbstrAct Syntypes of Corydoras meridionalis Rodolpho von Ihering, 1911, once regarded as lost, were recently found in the collection of fishes of the Museu de Zoologia da USP. The syntypes had been identified as C. ehrhardti Steindachner, 1910, currently considered a senior synonym of that species. Examination of the rediscovered syntypes corroborates the proposed synonymy. Data on the syntypes are presented and compared with information in the original descriptions of C. ehrhardti and C. meridionalis; a few discrepancies found are discussed. A lectotype is designated for C. meridionalis and a photograph of the specimen is provided. Keywords: Taxonomy; Catfish; Neotropical freshwater fish. IntroductIon Nijssen & Isbrücker (1980) considered Corydo- ras meridionalis a synonym of C. ehrhardti Steindach‑ Corydoras meridionalis was described by Rodol‑ ner, an action we presume was largely based on Iher‑ pho von Ihering (1911) on the basis of an unspeci‑ ing’s description of C. meridionalis (whose data mostly fied number of specimens; however it is possible to agree to those mentioned for C. ehrhardti) and also on assume that more than one specimen was examined the closeness of the type localities of both species in because it is stated in the original description in two the state of Santa Catarina, Brazil: “Colonia Hansa” languages: “Compr.: até 60 mm.” (Portuguese) and for C. meridionalis and “Fluβgebiet des Jaraguá” for “Korperlange: bis 60 mm.” (German), meaning that C. -
Category Popular Name of the Group Phylum Class Invertebrate
Category Popular name of the group Phylum Class Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Vertebrate Reptile Chordata Reptilia Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Invertebrate Arthropod Arthropoda Insecta Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Fish Chordata Actinopterygii Vertebrate Reptile Chordata Reptilia Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Mollusk Mollusca Bivalvia Vertebrate Amphibian Chordata Amphibia Invertebrate Arthropod Arthropoda Insecta Vertebrate Fish Chordata Actinopterygii Invertebrate Mollusk Mollusca Bivalvia Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Invertebrate Arthropod Arthropoda Insecta Vertebrate -
Ichthyofauna in the Last Free-Flowing River of the Lower Iguaçu Basin: the Importance of Tributaries for Conservation of Endemic Species
ZooKeys 1041: 183–203 (2021) A peer-reviewed open-access journal doi: 10.3897/zookeys.1041.63884 CHECKLIST https://zookeys.pensoft.net Launched to accelerate biodiversity research Ichthyofauna in the last free-flowing river of the Lower Iguaçu basin: the importance of tributaries for conservation of endemic species Suelen Fernanda Ranucci Pini1,2, Maristela Cavicchioli Makrakis2, Mayara Pereira Neves3, Sergio Makrakis2, Oscar Akio Shibatta4, Elaine Antoniassi Luiz Kashiwaqui2,5 1 Instituto Federal de Mato Grosso do Sul (IFMS), Rua Salime Tanure s/n, Santa Tereza, 79.400-000 Coxim, MS, Brazil 2 Grupo de Pesquisa em Tecnologia em Ecohidráulica e Conservação de Recursos Pesqueiros e Hídricos (GETECH), Programa de Pós-graduação em Engenharia de Pesca, Universidade Estadual do Oeste do Paraná (UNIOESTE), Rua da Faculdade, 645, Jardim La Salle, 85903-000 Toledo, PR, Brazil 3 Programa de Pós-Graduação em Biologia Animal, Laboratório de Ictiologia, Departamento de Zoologia, Instituto de Bi- ociências, Universidade Federal do Rio Grande do Sul (UFRGS), Avenida Bento Gonçalves, 9500, Agronomia, 90650-001, Porto Alegre, RS, Brazil 4 Departamento de Biologia Animal e Vegetal, Universidade Estadual de Londrina, Rod. Celso Garcia Cid PR 445 km 380, 86057-970, Londrina, PR, Brazil 5 Grupo de Estudos em Ciências Ambientais e Educação (GEAMBE), Universidade Estadual de Mato Grosso do Sul (UEMS), Br 163, KM 20.7, 79980-000 Mundo Novo, MS, Brazil Corresponding author: Suelen F. R. Pini ([email protected]) Academic editor: M. E. Bichuette | Received 2 February 2021 | Accepted 22 April 2021 | Published 3 June 2021 http://zoobank.org/21EEBF5D-6B4B-4F9A-A026-D72354B9836C Citation: Pini SFR, Makrakis MC, Neves MP, Makrakis S, Shibatta OA, Kashiwaqui EAL (2021) Ichthyofauna in the last free-flowing river of the Lower Iguaçu basin: the importance of tributaries for conservation of endemic species. -
Siluriformes: Heptapteridae): an Integrative Proposal to Delimit Species Using a Multidisciplinary Strategy
UNIVERSIDADE DE SÃO PAULO MUSEU DE ZOOLOGIA Veronica Slobodian Taxonomic revision of Pimelodella Eigenmann & Eigenmann, 1888 (Siluriformes: Heptapteridae): an integrative proposal to delimit species using a multidisciplinary strategy São Paulo 2017 Veronica Slobodian Taxonomic revision of Pimelodella Eigenmann & Eigenmann, 1888 (Siluriformes: Heptapteridae): an integrative proposal to delimit species using a multidisciplinary strategy Revisão taxonômica de Pimelodella Eigenmann & Eigenmann, 1888 (Siluriformes: Heptapteridae): uma proposta integrativa para a delimitação de espécies com estratégias multidisciplinares v.1 Original version Thesis Presented to the Post-Graduate Program of the Museu de Zoologia da Universidade de São Paulo to obtain the degree of Doctor of Science in Systematics, Animal Taxonomy and Biodiversity Advisor: Mário César Cardoso de Pinna, PhD. São Paulo 2017 “I do not authorize the reproduction and dissemination of this work in part or entirely by any eletronic or conventional means.” Serviço de Bibloteca e Documentação Museu de Zoologia da Universidade de São Paulo Cataloging in Publication Slobodian, Veronica Taxonomic revision of Pimelodella Eigenmann & Eigenmann, 1888 (Siluriformes: Heptapteridae) : an integrative proposal to delimit species using a multidisciplinary strategy / Veronica Slobodian ; orientador Mário César Cardoso de Pinna. São Paulo, 2017. 2 v. (811 f.) Tese de Doutorado – Programa de Pós-Graduação em Sistemática, Taxonomia e Biodiversidade, Museu de Zoologia, Universidade de São Paulo, 2017. Versão original 1. Peixes (classificação). 2. Siluriformes 3. Heptapteridae. I. Pinna, Mário César Cardoso de, orient. II. Título. CDU 597.551.4 Abstract Primary taxonomic research in neotropical ichthyology still suffers from limited integration between morphological and molecular tools, despite major recent advancements in both fields. Such tools, if used in an integrative manner, could help in solving long-standing taxonomic problems.