A Coupled Carbon-Silicon Cycle Model Over Earth History: Reverse
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Four Hundred Million Years of Silica Biomineralization in Land Plants
Four hundred million years of silica biomineralization in land plants Elizabeth Trembath-Reicherta,1, Jonathan Paul Wilsonb, Shawn E. McGlynna,c, and Woodward W. Fischera aDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125; bDepartment of Biology, Haverford College, Haverford, PA 19041; and cGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji-shi, Tokyo 192-0397, Japan Edited by Thure E. Cerling, University of Utah, Salt Lake City, UT, and approved February 20, 2015 (received for review January 7, 2015) Biomineralization plays a fundamental role in the global silicon Silica is widely used within plants for structural support and cycle. Grasses are known to mobilize significant quantities of Si in pathogen defense (19–21), but it remains a poorly understood the form of silica biominerals and dominate the terrestrial realm aspect of plant biology. Recent work on the angiosperm Oryza today, but they have relatively recent origins and only rose to sativa demonstrated that silica accumulation is facilitated by taxonomic and ecological prominence within the Cenozoic Era. transmembrane proteins expressed in root cells (21–24). Phy- This raises questions regarding when and how the biological silica logenetic analysis revealed that these silicon transport proteins cycle evolved. To address these questions, we examined silica were derived from a diverse family of modified aquaporins that abundances of extant members of early-diverging land plant include arsenite and glycerol transporters (19, 21, 25, 26). A clades, which show that silica biomineralization is widespread different member of this aquaporin family was recently identi- across terrestrial plant linages. Particularly high silica abundances fied that enables silica uptake in the horsetail Equisetum,an are observed in lycophytes and early-diverging ferns. -
Consumption of Atmospheric Carbon Dioxide Through Weathering of Ultramafic Rocks in the Voltri Massif
geosciences Article Consumption of Atmospheric Carbon Dioxide through Weathering of Ultramafic Rocks in the Voltri Massif (Italy): Quantification of the Process and Global Implications Francesco Frondini 1,* , Orlando Vaselli 2 and Marino Vetuschi Zuccolini 3 1 Dipartimento di Fisica e Geologia, Università degli Studi di Perugia, Via Pascoli s.n.c., 06123 Perugia, Italy 2 Dipartimento di Scienze della Terra, Università degli Studi di Firenze, Via La Pira 4, 50121 Firenze, Italy; orlando.vaselli@unifi.it 3 Dipartimento di Scienze della Terra dell’Ambiente e della Vita, Università degli Studi di Genova, Corso Europa 26, 16132 Genova, Italy; [email protected] * Correspondence: [email protected] Received: 1 May 2019; Accepted: 5 June 2019; Published: 9 June 2019 Abstract: Chemical weathering is the main natural mechanism limiting the atmospheric carbon dioxide levels on geologic time scales (>1 Ma) but its role on shorter time scales is still debated, highlighting the need for an increase of knowledge about the relationships between chemical weathering and atmospheric CO2 consumption. A reliable approach to study the weathering reactions is the quantification of the mass fluxes in and out of mono lithology watershed systems. In this work the chemical weathering and atmospheric carbon dioxide consumption of ultramafic rocks have been studied through a detailed geochemical mass balance of three watershed systems located in the metaophiolitic complex of the Voltri Massif (Italy). Results show that the rates of carbon dioxide consumption of the study area (weighted average = 3.02 1.67 105 mol km 2 y 1) are higher than ± × − − the world average CO2 consumption rate and are well correlated with runoff, probably the stronger weathering controlling factor. -
Biomineralization and Global Biogeochemical Cycles Philippe Van Cappellen Faculty of Geosciences, Utrecht University P.O
1122 Biomineralization and Global Biogeochemical Cycles Philippe Van Cappellen Faculty of Geosciences, Utrecht University P.O. Box 80021 3508 TA Utrecht, The Netherlands INTRODUCTION Biological activity is a dominant force shaping the chemical structure and evolution of the earth surface environment. The presence of an oxygenated atmosphere- hydrosphere surrounding an otherwise highly reducing solid earth is the most striking consequence of the rise of life on earth. Biological evolution and the functioning of ecosystems, in turn, are to a large degree conditioned by geophysical and geological processes. Understanding the interactions between organisms and their abiotic environment, and the resulting coupled evolution of the biosphere and geosphere is a central theme of research in biogeology. Biogeochemists contribute to this understanding by studying the transformations and transport of chemical substrates and products of biological activity in the environment. Biogeochemical cycles provide a general framework in which geochemists organize their knowledge and interpret their data. The cycle of a given element or substance maps out the rates of transformation in, and transport fluxes between, adjoining environmental reservoirs. The temporal and spatial scales of interest dictate the selection of reservoirs and processes included in the cycle. Typically, the need for a detailed representation of biological process rates and ecosystem structure decreases as the spatial and temporal time scales considered increase. Much progress has been made in the development of global-scale models of biogeochemical cycles. Although these models are based on fairly simple representations of the biosphere and hydrosphere, they account for the large-scale changes in the composition, redox state and biological productivity of the earth surface environment that have occurred over geological time. -
Nutrient Cycles, Biodegradation, and Bioremediation
LECTURE PRESENTATIONS For BROCK BIOLOGY OF MICROORGANISMS, THIRTEENTH EDITION Michael T. Madigan, John M. Martinko, David A. Stahl, David P. Clark Chapter 24 Nutrient Cycles, Lectures by Biodegradation, and John Zamora Middle Tennessee State University Bioremediation © 2012 Pearson Education, Inc. I. Nutrient Cycles • 24.1 The Carbon Cycle • 24.2 Syntrophy and Methanogenesis • 24.3 The Nitrogen Cycle • 24.4 The Sulfur Cycle • 24.5 The Iron Cycle • 24.6 The Phosphorus, Calcium and Silica Cycles © 2012 Pearson Education, Inc. Marmara University – Enve3003 Env. Eng. Microbiology – Assist. Prof. Deniz AKGÜL 24.1 The Carbon Cycle • Carbon is cycled through all of Earth’s major carbon reservoirs (Figure 24.1) – Includes atmosphere, land, oceans, sediments, rocks and biomass © 2012 Pearson Education, Inc. Marmara University – Enve3003 Env. Eng. Microbiology – Assist. Prof. Deniz AKGÜL CO2 Human Figure 24.1 The carbon cycle activities Respiration The greatest reservoir of carbon on Earth is in rocks and sediments and most of this is in inorganic form as Land Animals and plants microorganisms carbonates Aquatic CO2 CO2 plants and Aquatic Human phyto- animals plankton Biological pump activities Fossil CO2 Humus Death and fuels mineralization Soil formation Respiration Earth’s crust Rock formation Land Animals and plants microorganisms Aquatic CO2 plants and Aquatic phyto- animals plankton Biological pump Fossil CO2 Humus Death and fuels mineralization Soil formation Earth’s crust Rock formation The carbon and oxygen cycles are closely connected, as oxygenic photosynthesis both removes CO2 and produces O2 and respiratory processes both produce CO2 and remove O2 © 2012 Pearson Education, Inc. Marmara University – Enve3003 Env. Eng. -
Continental Erosion and the Cenozoic Rise of Marine Diatoms
Continental erosion and the Cenozoic rise of marine diatoms Pedro Cermeñoa,1, Paul G. Falkowskib,c, Oscar E. Romerod, Morgan F. Schallere, and Sergio M. Vallinaa aDepartamento de Biología Marina y Oceanografía, Instituto de Ciencias del Mar, 08003 Barcelona, Spain; bEnvironmental Biophysics and Molecular Ecology Program, Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901; cDepartment of Earth and Planetary Sciences, Rutgers University, Piscataway, NJ 08854; dMARUM - Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany; and eEarth and Environmental Science, Rensselaer Polytechnic Institute, Troy, NY 12180 Edited by Donald E. Canfield, Institute of Biology and Nordic Center for Earth Evolution, University of Southern Denmark, Odense M, Denmark, and approved February 23, 2015 (received for review July 8, 2014) Marine diatoms are silica-precipitating microalgae that account for Results and Discussion over half of organic carbon burial in marine sediments and thus The Summed Common species Occurrence Rate (SCOR) quanti- they play a key role in the global carbon cycle. Their evolutionary fies changes in the extent to which species were common and expansion during the Cenozoic era (66 Ma to present) has been geographically widespread from the fossil record (12). This index associated with a superior competitive ability for silicic acid rela- is based on the assumption that the more globally abundant tive to other siliceous plankton such as radiolarians, which evolved a species is, the more likely it is to occur in a greater number of by reducing the weight of their silica test. Here we use a mathe- sampling sites. Together with SCOR, the temporal dynamics of matical model in which diatoms and radiolarians compete for silicic diversity generated from global deep sea sediment data compi- acid to show that the observed reduction in the weight of radio- lations permit delineation of the evolutionary trajectories of larian tests is insufficient to explain the rise of diatoms. -
Anonymous Referee #1 This Paper Presents New
Anonymous Referee #1 This paper presents new pore water and sediments data from the Guaymas Basin in the Pacific, focusing on silicon and stable silicon isotopes, early diagenetic processes, and implications for silicon cycling in the oceans. The authors present new and high quality data, adding to a relatively sparse literature on the subject, and explore their interpretation with a model. The paper is very well- written and enjoyable to read. I have only a few comments and suggestions for where the methods and discussion could be expanded. As such, I am fully supportive of the publication of this manuscript with minor revisions. Dear Reviewer, Thank you very much for your positive feedback and the appreciation of our work. We mainly agree with the comments and suggestions you have raised and we will incorporate the requested changes in the manuscript, in case of a positive evaluation by the editor. Please find below our answers to your comments. All line numbers refer to the revised manuscript. I would like to see some more detail in the methods and supplementary information. 1) Firstly, on page 6, line 182, the authors describe drying down the dissolved bSiO2 samples prior to analysis. Could there have been any problems with loss of Si at this stage? Could the authors comment upon this and perhaps include yield data? 2) The described process of bSiO2 digestion is a standard procedure following Reynolds et al. (2008) and Ehlert et al. (2012). Drying of the samples was shown by Ehlert et al. (2012) to have no effect on the Si isotopic composition of the samples. -
Microbially Induced Potassium Enrichment in Paleoproterozoic Shales and Implications for Reverse Weathering on Early Earth
ARTICLE https://doi.org/10.1038/s41467-019-10620-3 OPEN Microbially induced potassium enrichment in Paleoproterozoic shales and implications for reverse weathering on early Earth Jérémie Aubineau1, Abderrazak El Abani1, Andrey Bekker2, Andrea Somogyi 3, Olabode M. Bankole1, Roberto Macchiarelli4,5, Alain Meunier1, Armelle Riboulleau6, Jean-Yves Reynaud6 & Kurt O. Konhauser7 1234567890():,; Illitisation requires potassium incorporation into a smectite precursor, a process akin to reverse weathering. However, it remains unclear whether microbes facilitate K+ uptake to the sediments and whether illitisation was important in the geological past. The 2.1 billion-year- old Francevillian Series of Gabon has been shown to host mat-related structures (MRS) and, in this regard, these rocks offer a unique opportunity to test whether ancient microbes induced illitisation. Here, we show high K content confined to illite particles that are abundant in the facies bearing MRS, but not in the host sandstone and black shale. This observation suggests that microbial biofilms trapped K+ from the seawater and released it into the pore-waters during respiration, resulting in illitisation. The K-rich illite developed exclusively in the fossilized MRS thus provides a new biosignature for metasediments derived from K-feldspar-depleted rocks that were abundant crustal components on ancient Earth. 1 UMR 7285 CNRS IC2MP, University of Poitiers, Poitiers 86073, France. 2 Department of Earth and Planetary Sciences, University of California, Riverside, CA 92521, USA. 3 Nanoscopium Beamline Synchrotron Soleil, BP 48, Saint-Aubin, Gif-sur-Yvette 91192, France. 4 Department of Geosciences, University of Poitiers, Poitiers 86073, France. 5 Department of Prehistory, UMR 7194 CNRS, National Museum of Natural History, Paris 75005, France. -
Rp,, OCEANOGRAPHY DEEP SEA. WASTE DISPOSAL
INTERNAL DOCUMENT rp,, OCEANOGRAPHY DEEP SEA. WASTE DISPOSAL [This document should not be cited in a published bibliography, and is supplied for the use of the recipient only]. a - INSTITUTE OF \ z OCEAN OGRAPHIC SCIENCES %V. '"oos INSTITUTE OF OCEANOGRAPHIC SCIENCES Worm ley, Godalming, Surrey, GU8 BUB. (042-879-4141) (Director: Dr. A. S. Laughton) Bidston Observatory, Crossway, Birkenhead, Taunton, Merseyside, L43 7RA. Somerset, TA1 2DW. (051 652-2396) (0823-86211) (Assistant Director: Dr. D. E. Cartwright) (Assistant Director: M.J. Tucker) OCEANOGRAPHY rslatsd to DEBP SEA. WASTE DISPOSAL A Survev commissioned bv the Department of the Environment In^tltnt^ or Oceanogr^phie Sciences, Woruloy, ^onalming, Surrey GDW September 1978 •r; Wn fr^'W'w , -ig^at igGr^SSjes*'': 'i'-.r '� 4 i®i": iSSfflSj*-; ,*h :gSm '# .f f. .-< ' ^ ' \" . ' .- : - '-' '"i" "'"Tn'fWr^ ^ "rf'iVf. i.^t. %& g,*;gh^ h#wk^, . '::Y '"?' "%v t /:;,f »"-^iY: ^jw&j ,<1.^....-L. ,. t '.4..^,.,.. r X e^^TDy; . '.*,,.:'*,;wVk..^... , .. WIS3 li A) pi if r 31*: 'AM jngraa $#* ;- :Y^-; •••••: if'**J KAW W!&#' %wt;pfy W,.x u t wk%Wg%#&0 '•'£i'5dteii>irt PAWR t .* jpM»rtte»ai«l'*<M»r» •"i £i 'li-,'".!,,• -•t'iA^r., - !MfcSs-d»e. * CONTENTS Page i-% INTRODUCTION 1.1 CHAPTER 1 GEOLOGY AND GEOPHYSICS 2.1 CHAPTER 2 GEOCHEMISTRY 3.1 CHAPTER 3 PHYSICAL OCEANOGRAPHY 4.1 CHAPTER 4 MARINE BIOLOGY INTROnUCTZON The Sixth Report of the Royal CommisaioA on Environmental Pollution (Cmnd 66l8) recommended that a programme of research is needed to ensure that safe containment for an indefinite period of lon^-lived, highly radioactive wastes is feasible before a commitment is made to a large scale nuclear programme, In response to the Commission^ recommendations the Government decided to keep open and study further two options for the disposal of waste in the ocean (Cmnd 6820). -
Silicon Cycling in Soils Revisited
plants Review Silicon Cycling in Soils Revisited Jörg Schaller 1,* , Daniel Puppe 1, Danuta Kaczorek 1,2 , Ruth Ellerbrock 1 and Michael Sommer 1,3 1 Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Müncheberg, Germany; [email protected] (D.P.); [email protected] (D.K.); [email protected] (R.E.); [email protected] (M.S.) 2 Department of Soil Environment Sciences, Warsaw University of Life Sciences (SGGW), 02-776 Warsaw, Poland 3 Institute of Environmental Science and Geography, University of Potsdam, 14476 Potsdam, Germany * Correspondence: [email protected]; Tel.: +49-33432-82371 Abstract: Silicon (Si) speciation and availability in soils is highly important for ecosystem functioning, because Si is a beneficial element for plant growth. Si chemistry is highly complex compared to other elements in soils, because Si reaction rates are relatively slow and dependent on Si species. Consequently, we review the occurrence of different Si species in soil solution and their changes by polymerization, depolymerization, and condensation in relation to important soil processes. We show that an argumentation based on thermodynamic endmembers of Si dependent processes, as currently done, is often difficult, because some reactions such as mineral crystallization require months to years (sometimes even centuries or millennia). Furthermore, we give an overview of Si reactions in soil solution and the predominance of certain solid compounds, which is a neglected but important parameter controlling the availability, reactivity, and function of Si in soils. We further discuss the drivers of soil Si cycling and how humans interfere with these processes. The soil Si cycle is of major importance for ecosystem functioning; therefore, a deeper understanding of drivers of Si cycling (e.g., predominant speciation), human disturbances and the implication for important soil properties (water storage, nutrient availability, and micro aggregate stability) is of fundamental relevance. -
Unveiling the Role of Rhizaria in the Silicon Cycle Natalia Llopis Monferrer
Unveiling the role of Rhizaria in the silicon cycle Natalia Llopis Monferrer To cite this version: Natalia Llopis Monferrer. Unveiling the role of Rhizaria in the silicon cycle. Other. Université de Bretagne occidentale - Brest, 2020. English. NNT : 2020BRES0041. tel-03259625 HAL Id: tel-03259625 https://tel.archives-ouvertes.fr/tel-03259625 Submitted on 14 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THESE DE DOCTORAT DE L'UNIVERSITE DE BRETAGNE OCCIDENTALE ECOLE DOCTORALE N° 598 Sciences de la Mer et du littoral Spécialité : Chimie Marine Par Natalia LLOPIS MONFERRER Unveiling the role of Rhizaria in the silicon cycle (Rôle des Rhizaria dans le cycle du silicium) Thèse présentée et soutenue à PLouzané, le 18 septembre 2020 Unité de recherche : Laboratoire de Sciences de l’Environnement Marin Rapporteurs avant soutenance : Diana VARELA Professor, Université de Victoria, Canada Giuseppe CORTESE Senior Scientist, GNS Science, Nouvelle Zélande Composition du Jury : Président : Géraldine SARTHOU Directrice de recherche, CNRS, LEMAR, Brest, France Examinateurs : Diana VARELA Professor, Université de Victoria, Canada Giuseppe CORTESE Senior Scientist, GNS Science, Nouvelle Zélande Colleen DURKIN Research Faculty, Moss Landing Marine Laboratories, Etats Unis Tristan BIARD Maître de Conférences, Université du Littoral Côte d’Opale, France Dir. -
Silica Production and the Contribution of Diatoms to New and Primary Production in the Central North Pacific
MARINE ECOLOGY PROGRESS SERIES Vol. 167: 89-104.1998 Published June 18 Mar Ecol Prog Ser Silica production and the contribution of diatoms to new and primary production in the central North Pacific Mark A. ~rzezinskil*:Tracy A. Villarea12,Fredric ~ipschultz~ 'Marine Science Institute and the Department of Ecology Evolution and Marine Biology, University of California, Santa Barbara, California 93106, USA 'The University of Texas at Austin. Marine Science Institute, 750 Channel View Drive, Port Aransas, Texas 78373-5015, USA 3Bermuda Biological Station for Research. Ferry Reach GE 01, Bermuda ABSTRACT: The silica cycle in the upper 200 m of the central North Pacific was examined to further as- sess the role of oligotrophic mid-ocean gyres in the global marine silica cycle and to evaluate the role of diatoms in the regional carbon and nitrogen cycles. Siliceous biomass in the upper 200 m was very low (generally c50 nmol S1 1.' of biogenic silica) with, higher concentrations (100 to 280 nmol Si 1.') ob- served occasionally in the deep chlorophyll maximum and in the nitracline Doubling times for biogenic silica were generally between 2 and 5 d, suggesting fairly rapid diatom growth. Ki~ieiicexperiments showed widespread limitation of silica production rates by ambient silicic acid concentrations (0.9 to 3.0 pM). Inputs of iron inferred from high concentrations of lithogenic silica (up to 300 nmol Si 1-l) in surface waters did not stimulate silica production. lntegrated silica production rates averaged 1.24 mm01 Si m-' d-' (range 0.47 to 2.9 mm01 Si m-' d-') This average is 2 to 3 times higher than those reported for other oligotrophic mid-ocean gyres, significantly increasing estimates of the fraction of global silica production occurring in these systems. -
The Secular Evolution of the Reverse Weathering Sink in the Global Li Cycle
Goldschmidt2020 Abstract The secular evolution of the reverse weathering sink in the global Li cycle MATTHEW S. FANTLE 1*, BEN DAVIS BARNES1, ELIZABETH ANDREWS1,2 1Dept. of Geosciences, Penn State University, University Park, PA 16802, USA (*[email protected]) 2 Hydrologic Science and Engineering, Dept. of Geology and Geological Engineering, Colorado School of Mines, Golden, CO 80401 The global cycling of Li in the modern ocean is driven primarily by continental chemical weathering and hydrothermal input fluxes, balanced by sinks associated with oceanic crust alteration and the authigenic precipitation of alumino-silicate clays (i.e., “reverse weathering”). Seawater δ7Li, as constrained by planktonic foraminiferal tests, has evolved significantly over the last 70 Ma, increasing ~9‰ to modern values over the Cenozoic. This increase has been hypothesized to reflect long-term changes in continental weathering [1]. While subsequent modeling efforts suggested that shifts in marine Li sinks could feasibly perturb seawater 7 δ Li [2], the mechanism remains unclear. In this contribution, we propose a novel mechanism for a reverse weathering-driven forcing of seawater δ7Li. Deep-sea sedimentary pore fluid data suggest that clay authigenesis occurs in carbonate-rich sediments, and that these sediments can represent significant sinks of Li from the global ocean (estimated at a maximum of <2·1010 moles Li/a). The Li isotopic data indicate that clay authigenesis occurs at depth in the sedimentary column, while modeling efforts suggest that deep mineral formation (and consequent isotopic fractionation of Li) changes the effective fractionation factor via isotopic distillation. Ultimately, the burial of reactive sediment, ostensibly biogenic silica, has the potential to drive variability in seawater δ7Li.