The High Road to the Human Genome

Total Page:16

File Type:pdf, Size:1020Kb

The High Road to the Human Genome A ccomplishing S e q u e n c in g t h e H u m a n G e n o m e Andrew Bartlett Submitted to Cardiff University in fulfilment of the requirements for the degree of Doctor of Philosophy September 2008 i UMI Number: U584600 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. Dissertation Publishing UMI U584600 Published by ProQuest LLC 2013. Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 D e c l a r a t io n This work has not previously been accepted in substance for any degree and is not concurrently submitted in candidature for any degree. Signed ..... y . .........(candidate) Date .............. STATEMENT 1 This thesis is being submitted in partial fulfilment of the requirements for the degree of PhD. S igned /. JjTU..../...... .J.........(cand idate) Date........... STATEMENT 2 This thesis is the result of my own independent work/investigation, except where otherwise stated. Other sources are acknowledged by explicit references. A bibliography is appended. Signed KJ. ) .... (candidate) Date............ .?. .4?.. ■ STATEMENT 3 I hereby give consent for my thesis, if accepted, to be available for photocopying and for inter-library loan, and for the title and summary to be made available to outside organisations. (candidate) A c k n o w l e d g e m e n t s Thanks first must go the research participants at the Institute, whose time and patience were necessary ingredients in the production of this thesis. Thanks to Anna Bartlett, who not only moved to Cardiff and became my wife in the course of this study, but who proofread the draft of this thesis and helped produce diagrams where my own skills were limited. Thanks to David Mellor, who offered advice and, more importantly, invaluable encouragement; Mark Connolly, who was at times landlord, roadtrip companion and proofreader; Mike Roberts, who had the ability to polish my diagrams; and Jamie Lewis, who travelled the same path over the past four years. Thanks must also go to Peter Glasner and Ruth McNally, my supervisors at the ESRC Centre for Economic and Social Aspects of Genomics (Cesagen), and to Mel Evans, who ensures that things happen despite my organisational abilities. Michael Arribas-Ayllon and Katie Featherstone, my Cesagen colleagues in research, deserve thanks for reading chapters and granting me the space and time to produce a completed thesis. In the Cardiff School of Social Science (SOCSI), thanks go to Liz Renton, who has the patience to ensure that I negotiate the necessary bureaucratic hurdles. SOCSI academic staff also offered criticism, encouragement and guidance; Paul Atkinson and Sara Delamont, Harry Collins and the rest of the Knowledge, Expertise and Science research group, and Theo Nichols. This research was supported by ESRC studentship PTA-042-2003-00031. S u m m a r y Modern biotechnology has been transformed from a largely academic pursuit to a multi billion-dollar commercial bio-industry that is seen as one of the foundations of the knowledge economy. The sequencing of the human genome is seen as one of the great achievements of contemporary science. Though narratives of the sequencing of the human genome concentrate on the leading figures, the Human Genome Project was the achievement of big science. Big science represents the transformation of scientific work from a craft-based adhocracy into a form of work conducted within bureaucratic organisations that employ huge teams of scientists and technicians with a proliferation of specialised roles. This ‘industrialisation’ of science led many to describe the Human Genome Project as involving ‘production line’ efforts, ‘sequencing mills’ and an ‘Industrial Revolution’ for biology. This thesis investigates the experience of work at the Institute, a large-scale sequencing centre. Entering the ‘hidden abode’ of production, the study examines the sequence of the human genome as an achievement of labour, rather than the product of ‘great men’. Interviews were conducted with a range of people across the ‘sequencing chain of production’. The study finds that work at the Institute was quite unlike the dehumanising, alienating work that might be expected as a result of the ‘industrialisation’ of science. Rather, the work of sequencing genomes recruited the sentiments of those working at the Institute, producing committed workers. This thesis examines the generation of commitment at the Institute in comparison to ‘high road’ models of work organisation. Given the central role of the sequence of the human genome in the future of biotechnology as a key sector in the knowledge economy, the Institute is considered with regard to debates around the future of work in technologically advanced economies. Co n t e n t s Part One: Primers and Presentiments 1 [A] Primers 2 A1 Introduction 3 A2 Sequences of Metaphors 5 A3 A History of the Human Genome Project 11 A4 Genomes and Economies 27 [B] Anatomies of Big Science 35 B1 Introduction 36 B2 A Drama of Scale 38 B3 A Case Study in Big Science: LIGO 45 B4 Big Science as a Quality of Laboratory Life 49 B5 Small Science? 51 B6 Understanding Work in Big Science Projects 53 B7 Big Science and Big Biology 58 [C] Pathologies of Work in Big Science 65 Cl Introduction 66 C2 Anatomies? Pathologies? 70 C3 Big Science Structures and Rationalisation 73 C4 The Automation of Scientific Work 78 C5 Meanings of Alienation 82 C6 The Ethos of Science 86 C7The Parable of the Needle and the Haystack 93 C8 Work, Modernity, and Big Science 97 Part Two: Strategy and Method 100 [D] Case 101 D1 Introduction 102 D2 The Institute 103 D3 A Typology of Case Studies 112 D4 Case Studies in Work and Science 115 D5 Monsters and De-Monstrations 117 [E] Conduct 121 El Introduction 122 E2 Why Choose Interviews? 124 E3 The Interview: Form and Content 131 v E4 Access and Anonymity 135 E5 Evidence and Illustration 141 Part Three: Illustrating and Accounting 145 [F] The Factory and the University 146 FI Introduction 147 F2 From the University to the Factory 150 F3 The Institute as a Factory 153 F4 The Institute as a University 167 F5 Hinterlands of Work 173 [G] The Recruitment of Sentiment 181 G1 Introduction 182 G2 Exceptionalism 187 G3 The Spark of Competition 199 G4 Celebrating Work 204 G5 The Work is Flat 207 G6 Personalising the Workplace 212 G7 Collectivity and Community 218 [H] The High Road to the Human Genome 222 HI Introduction 223 H2 The High Commitment Workplace 226 H3 High Commitment at the Institute 234 H4 Convergent Evolution, Common Descent? 248 [I] Interlude: Dis-Engagement and Dis -Integration 251 11 Introduction 252 12 The Triumph of Accomplishment? 254 13 Growing Apart 257 14 Living to Work, or Working to Live? 265 15 Postscript: Resisting Recruitment 268 Part Four: Context and Conclusions 272 [J] The Institute and the Knowledge Economy 273 J1 Introduction 274 J2 From Lisbon to Erewhon 277 J3 Knowledge Work and Knowledge Workers 283 J4 The De-Monstration of the Institute 289 Bibliography 295 vi T a b l e s a n d F ig u r e s Tables Table E3.1 Interview Themes 134 Table E4.1 Interviewees at the Institute 135 Figures Figure F2.1 The Dichotomies of Work 109 Figure F5.1 A Continuum of Forms of Work 175 Figure F5.2 Views from the Hinterlands of the University and the Factory 176 P a r t O n e : P r i m e r s a n d P resentiments Part One of the thesis, Primers and Presentiments, provides the exploration of the Institute with context. What is the history of the Human Genome Project? What analogues for the Human Genome Project and the Institute can we can we find in the literature on big science? What are the effects on science and on work of organising in these kinds of ways? Chapter A, Primers, provides the layer upon which the rest of the thesis is written. The chapter describes the mythic language, the big historical narrative, and large- scale economic story of the Human Genome Project. This chapter acknowledges these as a foundation from which to explore what is missing from these stories; the everyday descriptions of work, the history of the Institute from the view of those who sequenced the human genome, and the economic story of labour, not stock markets. Chapter B, Anatomies o f Work in Big Science, explores the descriptions of work in big science that are found in the sociological literature. The different levels of ‘bigness’ are considered; that of science as a whole, that of national science, that of a scientific discipline, and that of a scientific institution. The Human Genome Project was big science in a number of these ways, but the Institute is a big science institution. The possible consequences that result from organising work in such a way are considered in Chapter C, Pathologies o f Work in Big Science. The chapter draws on sociological concepts such as rationalisation and alienation to suggest the ‘pathologies’ that might mark the experience of work in big science. 1 [A ] P r i m e r s Primers are the short pieces of DNA that are used as the initial building blocks for synthetic DNA replication.
Recommended publications
  • Applied Category Theory for Genomics – an Initiative
    Applied Category Theory for Genomics { An Initiative Yanying Wu1,2 1Centre for Neural Circuits and Behaviour, University of Oxford, UK 2Department of Physiology, Anatomy and Genetics, University of Oxford, UK 06 Sept, 2020 Abstract The ultimate secret of all lives on earth is hidden in their genomes { a totality of DNA sequences. We currently know the whole genome sequence of many organisms, while our understanding of the genome architecture on a systematic level remains rudimentary. Applied category theory opens a promising way to integrate the humongous amount of heterogeneous informations in genomics, to advance our knowledge regarding genome organization, and to provide us with a deep and holistic view of our own genomes. In this work we explain why applied category theory carries such a hope, and we move on to show how it could actually do so, albeit in baby steps. The manuscript intends to be readable to both mathematicians and biologists, therefore no prior knowledge is required from either side. arXiv:2009.02822v1 [q-bio.GN] 6 Sep 2020 1 Introduction DNA, the genetic material of all living beings on this planet, holds the secret of life. The complete set of DNA sequences in an organism constitutes its genome { the blueprint and instruction manual of that organism, be it a human or fly [1]. Therefore, genomics, which studies the contents and meaning of genomes, has been standing in the central stage of scientific research since its birth. The twentieth century witnessed three milestones of genomics research [1]. It began with the discovery of Mendel's laws of inheritance [2], sparked a climax in the middle with the reveal of DNA double helix structure [3], and ended with the accomplishment of a first draft of complete human genome sequences [4].
    [Show full text]
  • Masthead (PDF)
    Proceedings of the National Academy ofPNAS Sciences of the United States of America www.pnas.org PRESIDENT OF Robert G. Roeder Geophysics John J. Mekalanos THE ACADEMY Michael Rosbash Michael L. Bender Peter Palese Ralph J. Cicerone David D. Sabatini Thomas E. Shenk Gertrud M. Schupbach Human Environmental Thomas J. Silhavy SENIOR EDITOR Robert Tjian Sciences Peter K. Vogt Solomon H. Snyder Susan Hanson Cellular and Molecular Physics ASSOCIATE EDITORS Neuroscience Immunology Anthony Leggett William C. Clark Pietro V. De Camilli Peter Cresswell Paul C. Martin Alan Fersht Richard L. Huganir Douglas T. Fearon Jack Halpern L. L. Iversen Richard A. Flavell Physiology and Jeremy Nathans Charles F. Stevens Dan R. Littman Pharmacology Thomas C. Su¨dhof Tak Wah Mak Susan G. Amara Joseph S. Takahashi William E. Paul David Julius EDITORIAL BOARD Hans Thoenen Michael Sela Ramon Latorre Ralph M. Steinman Masashi Yanagisawa Animal, Nutritional, and Chemistry Applied Microbial Sciences Stephen J. Benkovic Mathematics Plant Biology David L. Denlinger Bruce J. Berne Richard V. Kadison Maarten J. Chrispeels R. Michael Roberts Harry B. Gray Robion C. Kirby Enrico Coen Robert Haselkorn Linda J. Saif Mark A. Ratner George H. Lorimer Ryuzo Yanagimachi Barry M. Trost Medical Genetics, Hematology, and Nicholas J. Turro Anthropology Oncology Plant, Soil, and Charles T. Esmon Microbial Sciences Jeremy A. Sabloff Computer and Joseph L. Goldstein Roger N. Beachy Information Sciences Mark T. Groudine Steven E. Lindow Applied Mathematical Sciences Shafrira Goldwasser David O. Siegmund Tony Hunter M. S. Swaminathan Philip W. Majerus Susan R. Wessler Economic Sciences Newton E. Morton Applied Physical Sciences Ronald W.
    [Show full text]
  • CURRICULUM VITAE George M. Weinstock, Ph.D
    CURRICULUM VITAE George M. Weinstock, Ph.D. DATE September 26, 2014 BIRTHDATE February 6, 1949 CITIZENSHIP USA ADDRESS The Jackson Laboratory for Genomic Medicine 10 Discovery Drive Farmington, CT 06032 [email protected] phone: 860-837-2420 PRESENT POSITION Associate Director for Microbial Genomics Professor Jackson Laboratory for Genomic Medicine UNDERGRADUATE 1966-1967 Washington University EDUCATION 1967-1970 University of Michigan 1970 B.S. (with distinction) Biophysics, Univ. Mich. GRADUATE 1970-1977 PHS Predoctoral Trainee, Dept. Biology, EDUCATION Mass. Institute of Technology, Cambridge, MA 1977 Ph.D., Advisor: David Botstein Thesis title: Genetic and physical studies of bacteriophage P22 genomes containing translocatable drug resistance elements. POSTDOCTORAL 1977-1980 Postdoctoral Fellow, Department of Biochemistry TRAINING Stanford University Medical School, Stanford, CA. Advisor: Dr. I. Robert Lehman. ACADEMIC POSITIONS/EMPLOYMENT/EXPERIENCE 1980-1981 Staff Scientist, Molec. Gen. Section, NCI-Frederick Cancer Research Facility, Frederick, MD 1981-1983 Staff Scientist, Laboratory of Genetics and Recombinant DNA, NCI-Frederick Cancer Research Facility, Frederick, MD 1981-1984 Adjunct Associate Professor, Department of Biological Sciences, University of Maryland, Baltimore County, Catonsville, MD 1983-1984 Senior Scientist and Head, DNA Metabolism Section, Lab. Genetics and Recombinant DNA, NCI-Frederick Cancer Research Facility, Frederick, MD 1984-1990 Associate Professor with tenure (1985) Department of Biochemistry
    [Show full text]
  • 2009 NIH Director's Transformative Research Award Reviewers
    2009 NIH Director’s Transformative Research Award Reviewers Editorial Board Members Chairs David Botstein Keith Robert Yamamoto Princeton University University of California, San Francisco Members John T. Cacioppo Myron P. Gutmann University of Chicago Inter-University Consortium for Political and Social Research Aravinda Chakravarti Johns Hopkins School of Medicine Nola M. Hylton-Watson University of California, San Francisco Garret A. Fitzgerald Cecil B. Pickett University of Pennsylvania Biogen Idec Alfred G. Gilman Susan S. Taylor University of Texas Southwestern Medical University of California at San Diego Center Michael J. Welsh University of Iowa Mail Reviewers Craig Kendall Abbey Margaret Ashcroft University of California, Santa Barbara Division of Medicine Samuel Achilefu Richard Herbert Aster School of Medicine Blood Research Institute Manuel Ares Arleen D. Auerbach University of California Rockefeller University Bruce A. Armitage J. Thomas August Carnegie Mellon University Johns Hopkins University Mark A. Arnold Kevin A. Ault University of Iowa Emory University School of Medicine David C. Aron Jennifer Bates Averill Case Western Reserve University University of New Mexico 1 Mary Helen Barcellos-Hoff Leslie A. Bruggeman New York University School of Medicine Case Western Reserve University David P. Bartel Peter Burkhard New Cambrige Center University of Connecticut Ralf Bartenschlager Alma L. Burlingame University of Heidelberg University of California, San Francisco Rashid Bashir Frederic D. Bushman University of Illinois at Urbana – Champaign University of Pennsylvania Carl A. Batt Robert William Caldwell Cornell University Medical College of Georgia Mark T. Bedford Phil Gordon Campbell Research Division Carnegie Mellon University Kevin D. Belfield Joseph Nicholas Cappella University of Central Florida University of Pennsylvania Andrew Steven Belmont William A.
    [Show full text]
  • Molecular and Cellular Biology Volume 8 May 1988 Number 5
    MOLECULAR AND CELLULAR BIOLOGY VOLUME 8 MAY 1988 NUMBER 5 Aaron J. Shatkin, Editor in Chief(1990) Randy W. Schekman, Editor Joan A. Steitz, Editor (1990) Center for Advanced (1992) Yale University Biotechnology and Medicine University of California New Haven, Conn. Piscataway, N.J. Berkeley Robert Tjian, Editor (1991) David J. L. Luck, Editor (1992) Louis Siminovitch, Editor (1990) University of California Rockefeller University Mount Sinai Hospital Berkeley New York, N.Y. Toronto, Canada Harold E. Varmus, Editor (1989) Steven L. McKnight, Editor (1992) University of California Carnegie Institution of Washington San Francisco Baltimore, Md. EDITORIAL BOARD Frederick W. Alt (1990) Michael Green (1988) Douglas Lowy (1990) Matthew P. Scott (1989) Susan Berget (1990) Jack F. Greenblatt (1988) Paul T. Magee (1988) Fred Sherman (1988) Arnold J. Berk (1988) Leonard P. Guarente (1988) James Manley (1989) Arthur Skoultchi (1988) Alan Bernstein (1990) Christine Guthrie (1989) Janet E. Mertz (1990) Barbara Sollner-Webb (1989) Barbara K. Birshtein (1990) James E. Haber (1990) Robert L. Metzenberg (1988) Frank Solomon (1988) J. Michael Bishop (1990) Hidesaburo Hanafusa (1989) Robert K. Mortimer (1988) Karen Sprague (1989) Michael R. Botchan (1990) Leland D. Hartwell (1990) Bernardo Nadal-Ginard (1990) Pamela Stanley (1988) David Botstein (1990) Ari Helenius (1990) Paul Neiman (1989) Nat Sternberg (1989) Bruce P. Brandhorst (1990) Ira Herskowitz (1990) Joseph R. Nevins (1990) Bruce Stiliman (1988) James R. Broach (1988) James B. Hicks (1989) Carol Newlon (1988) Kevin Struhl (1989) Joan Brugge (1988) Alan Hinnebusch (1988) Mary Ann Osley (1990) Bill Sugden (1988) Mario R. Capecchi (1990) Michael J. Holland (1990) Brad Ozanne (1989) Lawrence H.
    [Show full text]
  • Genetically Engineered Plants: a Potential Solution to Climate Change
    Genetically Engineered Plants: A Potential Solution to Climate Change Dr Charles DeLisi GENETICALLY ENGINEERED PLANTS: A POTENTIAL SOLUTION TO CLIMATE CHANGE Climate change is already having devastating effects felt across the globe. Without adequate measures to counteract the human drivers behind climate change, these negative consequences are guaranteed to increase in severity in the coming decades. Esteemed biomedical scientist, Dr Charles DeLisi of Boston University, urges that a multi-disciplinary approach to mitigating climate change is vital. Using predictive modelling, he has demonstrated the potential power of genetically engineering plants to remove excess carbon dioxide from the atmosphere, thereby mitigating climate change. ‘During the post-industrial period, the planetary temperature has increased rapidly,’ explains Dr Charles DeLisi of Boston University. ‘Ice sheet melting has accelerated, ocean levels have risen with concomitant increases in coastal flooding, and extreme weather events have increased in frequency.’ Emissions Reductions: Not the Whole Solution Thus far, measures to tackle climate change have focused on reducing our emissions of carbon dioxide and other greenhouse gases. Over the last three The Climate Emergency These changes are driven by increasing decades, over 100 nations across the levels of atmospheric ‘greenhouse globe have signed multiple agreements Climate change is, arguably, the most gases’, such as carbon dioxide. Released to voluntarily limit their emissions, significant global threat that society as a by-product of fossil fuel combustion but these measures alone are proving faces. Even small perturbations and other human activities, the level ineffective at slowing climatic in the planet’s climatic system of carbon dioxide in the atmosphere disruption.
    [Show full text]
  • David Botstein 2015 Book.Pdf
    Princeton University HONORS FACULTY MEMBERS RECEIVING EMERITUS STATUS May 2015 The biographical sketches were written by colleagues in the departments of those honored. Copyright © 2015 by The Trustees of Princeton University 550275 Contents Faculty Members Receiving Emeritus Status 2015 Steven L. Bernasek .......................3 David Botstein...........................6 Erhan Çinlar ............................8 Caryl Emerson.......................... 11 Christodoulos A. Floudas ................. 15 James L. Gould ......................... 17 Edward John Groth III ...................20 Philip John Holmes ......................23 Paul R. Krugman .......................27 Bede Liu .............................. 31 Alan Eugene Mann ......................33 Joyce Carol Oates .......................36 Clarence Ernest Schutt ...................39 Lee Merrill Silver .......................41 Thomas James Trussell ...................43 Sigurd Wagner .........................46 { 1 } { 2 } David Botstein avid Botstein was educated at Harvard (A.B. 1963) and the D University of Michigan (Ph.D. 1967). He joined the faculty of the Massachusetts Institute of Technology, rising through the ranks from instructor to professor of genetics. In 1987, he moved to Genentech, Inc. as vice president–science, and, in 1990, he joined Stanford University’s School of Medicine, where he was chairman of the Department of Genetics. In July, 2003 he became director of the Lewis-Sigler Institute for Integrative Genomics and the Anthony B. Evnin ’62 Professor of Genomics at Princeton University. David’s research has centered on genetics, especially the use of genetic methods to understand biological functions. His early work in bacterial genetics contributed to the discovery of transposable elements in bacteria and an understanding of their physical structures and genetic properties. In the early 1970s, he turned to budding yeast (Saccharomyces cerevisiae) and devised novel genetic methods to study the functions of the actin and tubulin cytoskeletons.
    [Show full text]
  • Celebrating Years of 60Science Welcome to the 60Th Anni- Versary Symposium of the Miller Institute
    Celebrating Years of 60Science Welcome to the 60th Anni- versary Symposium of the Miller Institute. In an age of ever increasing special- ization, the Miller Institute stands apart as one of the very few enterprises to embrace all of Science as its purview. For 60 years the Miller Institute has provided generous sup- port to some of the lead- ing postdoctoral fellows in all fields of science, has supported extended visits from famous scientists from around the world, and has provided critical adminis- trative and teaching relief for Berkeley faculty at par- ticularly important points in their career. This grand tradition lives on, even in the face of ever-greater challenges, with a refresh- ing emphasis on clarity in cross-discipline communi- cation. We have assembled a panel of eight luminaries drawn from past and pres- ent members of the Miller Institute each of whom leads their field with cre- ative research at the fron- tiers of human knowledge. So relax, enjoy, and be sure to ask that question that you always wanted to have answered. Jasper Rine, Professor of Genetics and Developmental Biology Chair, Miller Institute 60th 60th Anniversary Agenda Friday, January 15 – Sunday, January 17, 2016 Friday evening - Alumni House 5:00 - 7:00 Reception Saturday – Stanley Hall 8:00 - 8:45 Registration 8:45 - 9:00 Welcome 9:00 - 11:45 Maha Mahadevan: “On growth and form: geometry, physics and biology” Alice Guionnet: “About Universal Laws” Roger Bilham: “Earthquakes and Money: Frail Buildings, Philanthropic Engineers and a Few Corrupt Bad Guys
    [Show full text]
  • Annual Rpt 2004 For
    I N S T I T U T E for A D V A N C E D S T U D Y ________________________ R E P O R T F O R T H E A C A D E M I C Y E A R 2 0 0 3 – 2 0 0 4 EINSTEIN DRIVE PRINCETON · NEW JERSEY · 08540-0631 609-734-8000 609-924-8399 (Fax) www.ias.edu Extract from the letter addressed by the Institute’s Founders, Louis Bamberger and Mrs. Felix Fuld, to the Board of Trustees, dated June 4, 1930. Newark, New Jersey. It is fundamental in our purpose, and our express desire, that in the appointments to the staff and faculty, as well as in the admission of workers and students, no account shall be taken, directly or indirectly, of race, religion, or sex. We feel strongly that the spirit characteristic of America at its noblest, above all the pursuit of higher learning, cannot admit of any conditions as to personnel other than those designed to promote the objects for which this institution is established, and particularly with no regard whatever to accidents of race, creed, or sex. TABLE OF CONTENTS 4·BACKGROUND AND PURPOSE 7·FOUNDERS, TRUSTEES AND OFFICERS OF THE BOARD AND OF THE CORPORATION 10 · ADMINISTRATION 12 · PRESENT AND PAST DIRECTORS AND FACULTY 15 · REPORT OF THE CHAIRMAN 20 · REPORT OF THE DIRECTOR 24 · OFFICE OF THE DIRECTOR - RECORD OF EVENTS 31 · ACKNOWLEDGMENTS 43 · REPORT OF THE SCHOOL OF HISTORICAL STUDIES 61 · REPORT OF THE SCHOOL OF MATHEMATICS 81 · REPORT OF THE SCHOOL OF NATURAL SCIENCES 107 · REPORT OF THE SCHOOL OF SOCIAL SCIENCE 119 · REPORT OF THE SPECIAL PROGRAMS 139 · REPORT OF THE INSTITUTE LIBRARIES 143 · INDEPENDENT AUDITORS’ REPORT 3 INSTITUTE FOR ADVANCED STUDY BACKGROUND AND PURPOSE The Institute for Advanced Study was founded in 1930 with a major gift from New Jer- sey businessman and philanthropist Louis Bamberger and his sister, Mrs.
    [Show full text]
  • Report and Recommendations of the Panel to Assess the Nih Investment in Research on Gene Therapy
    REPORT AND RECOMMENDATIONS OF THE PANEL TO ASSESS THE NIH INVESTMENT IN RESEARCH ON GENE THERAPY Stuart H. Orkin, M.D. Arno G. Motulsky, M.D. Co-chairs December 7, 1995 Executive Summary of Findings and Recommendations Dr. Harold Varmus, Director, National Institutes of Health (NIH), appointed an ad hoc committee to assess the current status and promise of gene therapy and provide recommendations regarding future NIH-sponsored research in this area. The Panel was asked specifically to comment on how funds and efforts should be distributed among various research areas and what funding mechanisms would be most effective in meeting research goals. The Panel finds that: 1. Somatic gene therapy is a logical and natural progression in the application of fundamental biomedical science to medicine and offers extraordinary potential, in the long-term, for the management and correction of human disease, including inherited and acquired disorders, cancer, and AIDS. The concept that gene transfer might be used to treat disease is founded on the remarkable advances of the past two decades in recombinant DNA technology. The types of diseases under consideration for gene therapy are diverse; hence, many different treatment strategies are being investigated, each with its own set of scientific and clinical challenges. 2. While the expectations and the promise of gene therapy are great, clinical efficacy has not been definitively demonstrated at this time in any gene therapy protocol, despite anecdotal claims of successful therapy and the initiation of more than 100 Recombinant DNA Advisory Committee (RAC)-approved protocols. 3. Significant problems remain in all basic aspects of gene therapy.
    [Show full text]
  • The I Nstitute L E T T E R
    THE I NSTITUTE L E T T E R INSTITUTE FOR ADVANCED STUDY PRINCETON, NEW JERSEY · FALL 2004 ARNOLD LEVINE APPOINTED FACULTY MEMBER IN THE SCHOOL OF NATURAL SCIENCES he Institute for Advanced Study has announced the appointment of Arnold J. Professor in the Life Sciences until 1998. TLevine as professor of molecular biology in the School of Natural Sciences. Profes- He was on the faculty of the Biochemistry sor Levine was formerly a visiting professor in the School of Natural Sciences where he Department at Princeton University from established the Center for Systems Biology (see page 4). “We are delighted to welcome 1968 to 1979, when he became chair and to the Faculty of the Institute a scientist who has made such notable contributions to professor in the Department of Microbi- both basic and applied biological research. Under Professor Levine’s leadership, the ology at the State University of New York Center for Systems Biology will continue working in close collaboration with the Can- at Stony Brook, School of Medicine. cer Institute of New Jersey, Robert Wood Johnson Medical School, Lewis-Sigler Center The recipient of many honors, among for Integrative Genomics at Princeton University, and BioMaPS Institute at Rutgers, his most recent are: the Medal for Out- The State University of New Jersey, as well as such industrial partners as IBM, Siemens standing Contributions to Biomedical Corporate Research, Inc., Bristol-Myers Squibb, and Merck & Co.,” commented Peter Research from Memorial Sloan-Kettering Goddard, Director of the Institute. Cancer Center (2000); the Keio Medical Arnold J. Levine’s research has centered on the causes of cancer in humans and ani- Science Prize of the Keio University mals.
    [Show full text]
  • Bioinformatics
    Bioinformatics 1 ioinformatics is a hybrid science that links biological data with techniques for information storage, distribution, and analysis to support multiple areas of scientific Bresearch, including biomedicine. Bioinformatics is fed by high-throughput data- generating experiments, including genomic sequence determinations and measurements of gene expression patterns. Database projects curate and annotate the data and then distribute it via the World Wide Web. Mining these data leads to scientific discoveries and to the identification of new clinical applications. In the field of medicine in particular, a number of important applications for bioinformatics have been discovered. For example, it is used to identify correlations between gene sequences and diseases, to predict protein structures from amino acid sequences, to aid in the design of novel drugs, and to tailor treatments to individual patients based on their DNA sequences (pharmacogenomics). “[Helix]”, ill. under ‘’Bioinformatics’’, S [&] T: Dependable Solutions, www.stcorp.nl/step/bioinformatics 120431 Bibliotheca Alexandrina Updated by Ghada Sami 1 The goal of bioinformatics is the extension of experimental data by predictions. A fundamental goal of computational biology is the prediction of protein structure from an amino acid sequence. The spontaneous folding of proteins shows that this should be possible. Progress in the development of methods to predict protein folding is measured by biennial Critical Assessment of Structure Prediction (CASP) programs, which involve blind tests of structure prediction methods. Bioinformatics is also used to predict interactions between proteins, given individual structures of the partners. This is known as the “docking problem.” Protein-protein complexes show good complementarity in surface shape and polarity and are stabilized largely by weak interactions, such as burial of hydrophobic surface, hydrogen bonds, and van der Waals forces.
    [Show full text]