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California Marine Life Protection Act (MLPA) Initiative
California Marine Life Protection Act (MLPA) Initiative Evaluation of Existing Central Coast Marine Protected Areas DRAFT, v. 2.0 November 4, 2005 CONTENTS EXECUTIVE SUMMARY ..........................................................................................................................4 1.0 INTRODUCTION ................................................................................................................................8 2.0 EVALUATION OF EXISTING MPAs .................................................................................................11 2.1 Año Nuevo Special Closure...........................................................................................................11 2.2 Elkhorn Slough State Marine Reserve ...........................................................................................12 2.3 Hopkins State Marine Reserve......................................................................................................15 2.4 Pacific Grove State Marine Conservation Area.............................................................................16 2.5: Carmel Bay State Marine Conservation Area ..............................................................................17 2.6 Point Lobos State Marine Reserve................................................................................................19 2.7 Julia Pfeiffer Burns State Marine Conservation Area.....................................................................20 2.8 Big Creek State Marine Reserve....................................................................................................22 -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Spiculous Skeleton Formation in the Freshwater Sponge Ephydatia fluviatilis Under Hypergravity Conditions
Spiculous skeleton formation in the freshwater sponge Ephydatia fluviatilis under hypergravity conditions Martijn C. Bart1, Sebastiaan J. de Vet2,3, Didier M. de Bakker4, Brittany E. Alexander1, Dick van Oevelen5, E. Emiel van Loon6, Jack J.W.A. van Loon7 and Jasper M. de Goeij1 1 Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands 2 Earth Surface Science, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands 3 Taxonomy & Systematics, Naturalis Biodiversity Center, Leiden, The Netherlands 4 Microbiology & Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research & Utrecht University, Utrecht, The Netherlands 5 Department of Estuarine and Delta Systems, NIOZ Royal Netherlands Institute for Sea Research & Utrecht University, Utrecht, The Netherlands 6 Department of Computational Geo-Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands 7 Dutch Experiment Support Center, Department of Oral and Maxillofacial Surgery/Oral Pathology, VU University Medical Center & Academic Centre for Dentistry Amsterdam (ACTA) & European Space Agency Technology Center (ESA-ESTEC), TEC-MMG LIS Lab, Noordwijk, Amsterdam, The Netherlands ABSTRACT Successful dispersal of freshwater sponges depends on the formation of dormant sponge bodies (gemmules) under adverse conditions. Gemmule formation allows the sponge to overcome critical environmental conditions, for example, desiccation or freezing, and to re-establish as a fully developed sponge when conditions are more favorable. A key process in sponge development from hatched gemmules is the construction of the silica skeleton. Silica spicules form the structural support for the three-dimensional filtration system the sponge uses to filter food particles from Submitted 30 August 2018 ambient water. -
Ereskovsky Et 2018 Bulgarie.Pd
Sponge community of the western Black Sea shallow water caves: diversity and spatial distribution Alexander Ereskovsky, Oleg Kovtun, Konstantin Pronin, Apostol Apostolov, Dirk Erpenbeck, Viatcheslav Ivanenko To cite this version: Alexander Ereskovsky, Oleg Kovtun, Konstantin Pronin, Apostol Apostolov, Dirk Erpenbeck, et al.. Sponge community of the western Black Sea shallow water caves: diversity and spatial distribution. PeerJ, PeerJ, 2018, 6, pp.e4596. 10.7717/peerj.4596. hal-01789010 HAL Id: hal-01789010 https://hal.archives-ouvertes.fr/hal-01789010 Submitted on 14 May 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Sponge community of the western Black Sea shallow water caves: diversity and spatial distribution Alexander Ereskovsky1,2, Oleg A. Kovtun3, Konstantin K. Pronin4, Apostol Apostolov5, Dirk Erpenbeck6 and Viatcheslav Ivanenko7 1 Institut Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (IMBE), Aix Marseille University, CNRS, IRD, Avignon Université, Marseille, France 2 Department of Embryology, Faculty of Biology, -
Ereskovsky Et 2017 Oscarella S
Transcriptome sequencing and delimitation of sympatric Oscarella species (O. carmela and O. pearsei sp. nov) from California, USA Alexander Ereskovsky, Daniel Richter, Dennis Lavrov, Klaske Schippers, Scott Nichols To cite this version: Alexander Ereskovsky, Daniel Richter, Dennis Lavrov, Klaske Schippers, Scott Nichols. Transcriptome sequencing and delimitation of sympatric Oscarella species (O. carmela and O. pearsei sp. nov) from California, USA. PLoS ONE, Public Library of Science, 2017, 12 (9), pp.1-25/e0183002. 10.1371/jour- nal.pone.0183002. hal-01790581 HAL Id: hal-01790581 https://hal.archives-ouvertes.fr/hal-01790581 Submitted on 14 May 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License RESEARCH ARTICLE Transcriptome sequencing and delimitation of sympatric Oscarella species (O. carmela and O. pearsei sp. nov) from California, USA Alexander V. Ereskovsky1,2, Daniel J. Richter3,4, Dennis V. Lavrov5, Klaske J. Schippers6, Scott A. Nichols6* 1 Institut MeÂditerraneÂen de BiodiversiteÂet d'Ecologie Marine et Continentale (IMBE), CNRS, IRD, Aix Marseille UniversiteÂ, Avignon UniversiteÂ, Station Marine d'Endoume, Marseille, France, 2 Department of a1111111111 Embryology, Faculty of Biology, Saint-Petersburg State University, 7/9 Universitetskaya emb., St. -
Demospongiae) Asociadas a Comunidades Coralinas Del Pacífico Mexicano
INSTITUTO POLITÉCNICO NACIONAL CENTRO INTERDISCIPLINARIO DE CIENCIAS MARINAS COMPOSICIÓN Y AFINIDADES BIOGEOGRÁFICAS DE ESPONJAS (DEMOSPONGIAE) ASOCIADAS A COMUNIDADES CORALINAS DEL PACÍFICO MEXICANO T E S I S QUE PARA OBTENER EL GRADO DE DOCTORADO EN CIENCIAS MARINAS P R E S E N T A CRISTINA VEGA JUÁREZ LA PAZ, B. C. S. JUNIO DEL 2012 INSTITUTO POLITÉCNICO NACIONAL SECRETARÍA DE INVESTIGACIÓN Y POSGRADO CARTA CESIÓN DE DERECHOS En la Ciudad de La Paz, B.C.S., el día 23 del mees Mayo del año 2012 el (la) que suscribe MC. CRISTINA VEGA JUÁREZ alumno(a) del Programa de DOCTORADO EN CIENCIAS MARINAS con número de registro B081062 adscrito al CENTRO INTERDISCIPLINARIO DE CIENCIAS MARINAS manifiesta que es autor (a) intelectual del presente trabajo de tesis, baajjo la dirección de: DRA. CLAUDIA JUDITH HERNÁNDEZ GUERRERO Y DR. JOSSÉ LUIS CARBALLO CENIZO y cede los derechos del trabajo titulado: “COMPOSICIÓN Y AFINIDADES BIOGEOGRÁFICAS DE ESPONJAS (DEMOSPONGIAE) ASOCIADAS A COMUNIDADES CORALINAS DEL PACÍFICO MEXICANO” al Instituto Politécnico Nacional, para su difusión con fines académicos y de investigación. Los usuarios de la información no deben reproducir el contenido textual, gráficas o datos del trabajo sin el permiso expreso del autor y/o director del trabajo. Éste, puede ser obtenido escribiendo a la Siguiente dirección: [email protected] - [email protected] [email protected] Si el permiso se otorga, el usuario deberá dar el agradecimiento correspondiente y citar la fuente del mismo. MC. CRISTINA VEGA JUÁREZ nombre y firmaa AGRADECIMIENTOS Al Instituto Politécnico Nacional a través del Centro Interdisciplinario de Ciencias Marinas, La Paz, B.C.S. -
Photographic Identification Guide to Some Common Marine Invertebrates of Bocas Del Toro, Panama
Caribbean Journal of Science, Vol. 41, No. 3, 638-707, 2005 Copyright 2005 College of Arts and Sciences University of Puerto Rico, Mayagu¨ez Photographic Identification Guide to Some Common Marine Invertebrates of Bocas Del Toro, Panama R. COLLIN1,M.C.DÍAZ2,3,J.NORENBURG3,R.M.ROCHA4,J.A.SÁNCHEZ5,A.SCHULZE6, M. SCHWARTZ3, AND A. VALDÉS7 1Smithsonian Tropical Research Institute, Apartado Postal 0843-03092, Balboa, Ancon, Republic of Panama. 2Museo Marino de Margarita, Boulevard El Paseo, Boca del Rio, Peninsula de Macanao, Nueva Esparta, Venezuela. 3Smithsonian Institution, National Museum of Natural History, Invertebrate Zoology, Washington, DC 20560-0163, USA. 4Universidade Federal do Paraná, Departamento de Zoologia, CP 19020, 81.531-980, Curitiba, Paraná, Brazil. 5Departamento de Ciencias Biológicas, Universidad de los Andes, Carrera 1E No 18A – 10, Bogotá, Colombia. 6Smithsonian Marine Station, 701 Seaway Drive, Fort Pierce, FL 34949, USA. 7Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, California 90007, USA. This identification guide is the result of intensive sampling of shallow-water habitats in Bocas del Toro during 2003 and 2004. The guide is designed to aid in identification of a selection of common macroscopic marine invertebrates in the field and includes 95 species of sponges, 43 corals, 35 gorgonians, 16 nem- erteans, 12 sipunculeans, 19 opisthobranchs, 23 echinoderms, and 32 tunicates. Species are included here on the basis on local abundance and the availability of adequate photographs. Taxonomic coverage of some groups such as tunicates and sponges is greater than 70% of species reported from the area, while coverage for some other groups is significantly less and many microscopic phyla are not included. -
(Homoscleromorpha) with Description of Two New Oscarella Species
Systematics and Molecular Phylogeny of the Family Oscarellidae (Homoscleromorpha) with Description of Two New Oscarella Species Eve Gazave, Dennis Lavrov, Jory Cabrol, Emmanuelle Renard, Caroline Rocher, Jean Vacelet, Maja Adamska, Carole Borchiellini, Alexander Ereskovsky To cite this version: Eve Gazave, Dennis Lavrov, Jory Cabrol, Emmanuelle Renard, Caroline Rocher, et al.. Systematics and Molecular Phylogeny of the Family Oscarellidae (Homoscleromorpha) with Description of Two New Oscarella Species. PLoS ONE, Public Library of Science, 2013, 160, pp.781 - 781. 10.1371/jour- nal.pone.0063976.s006. hal-01456636 HAL Id: hal-01456636 https://hal.archives-ouvertes.fr/hal-01456636 Submitted on 13 Apr 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Systematics and Molecular Phylogeny of the Family Oscarellidae (Homoscleromorpha) with Description of Two New Oscarella Species Eve Gazave1,2*, Dennis V. Lavrov3, Jory Cabrol2, Emmanuelle Renard2, Caroline Rocher2, Jean Vacelet2, Maja Adamska4, Carole Borchiellini2, Alexander V. Ereskovsky2,5 1 Institut -
Zootaxa 20 Years: Phylum Porifera
Zootaxa 4979 (1): 038–056 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Review ZOOTAXA Copyright © 2021 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4979.1.8 http://zoobank.org/urn:lsid:zoobank.org:pub:3409F59A-0552-44A8-89F0-4F0230CB27E7 Zootaxa 20 years: Phylum Porifera JOHN N.A. HOOPER1,2*, GERT WÖRHEIDE3,4,5, EDUARDO HAJDU6, DIRK ERPENBECK3,5, NICOLE J. DE VOOGD7,8 & MICHELLE KLAUTAU9 1Queensland Museum, PO Box 3300, South Brisbane 4101, Brisbane, Queensland, Australia [email protected], https://orcid.org/0000-0003-1722-5954 2Griffith Institute for Drug Discovery, Griffith University, Brisbane 4111, Queensland, Australia 3Department of Earth- and Environmental Sciences, Ludwig-Maximilians-Universität, Richard-Wagner Straße 10, 80333 Munich, Germany 4SNSB-Bavarian State Collection of Palaeontology and Geology, Richard-Wagner Straße 10, 80333 Munich, Germany 5GeoBio-Center, Ludwig-Maximilians-Universität München, Richard-Wagner Straße 10, 80333 Munich, Germany [email protected], https://orcid.org/0000-0002-6380-7421 [email protected], https://orcid.org/0000-0003-2716-1085 6Museu Nacional/UFRJ, TAXPO - Depto. Invertebrados, Quinta da Boa Vista, s/n 20940-040, Rio de Janeiro, RJ, BRASIL [email protected], https://orcid.org/0000-0002-8760-9403 7Naturalis Biodiversity Center, Dept. Marine Biodiversity, P.O. Box 9617, 2300 RA Leiden, The Netherlands [email protected], https://orcid.org/0000-0002-7985-5604 8Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands 9Universidade Federal do Rio de Janeiro, Instituto de Biologia, Departamento de Zoologia, Av. Carlos Chagas Filho, 373, CEP 21941- 902, Rio de Janeiro, RJ, Brasil. -
The Comparative Embryology of Sponges Alexander V
The Comparative Embryology of Sponges Alexander V. Ereskovsky The Comparative Embryology of Sponges Alexander V. Ereskovsky Department of Embryology Biological Faculty Saint-Petersburg State University Saint-Petersburg Russia [email protected] Originally published in Russian by Saint-Petersburg University Press ISBN 978-90-481-8574-0 e-ISBN 978-90-481-8575-7 DOI 10.1007/978-90-481-8575-7 Springer Dordrecht Heidelberg London New York Library of Congress Control Number: 2010922450 © Springer Science+Business Media B.V. 2010 No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording or otherwise, without written permission from the Publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Preface It is generally assumed that sponges (phylum Porifera) are the most basal metazoans (Kobayashi et al. 1993; Li et al. 1998; Mehl et al. 1998; Kim et al. 1999; Philippe et al. 2009). In this connection sponges are of a great interest for EvoDevo biolo- gists. None of the problems of early evolution of multicellular animals and recon- struction of a natural system of their main phylogenetic clades can be discussed without considering the sponges. These animals possess the extremely low level of tissues organization, and demonstrate extremely low level of processes of gameto- genesis, embryogenesis, and metamorphosis. They show also various ways of advancement of these basic mechanisms that allow us to understand processes of establishment of the latter in the early Metazoan evolution. -
“Diversity and Specificity of the Marine Sponge Microbiome As Inspected by Next Generation Sequencing”
“DIVERSITY AND SPECIFICITY OF THE MARINE SPONGE MICROBIOME AS INSPECTED BY NEXT GENERATION SEQUENCING” André Rodrigues Soares Mestrado em Biologia Molecular e Microbiana Trabalho efetuado sob a orientação de: Dr. Rodrigo da Silva Costa Prof.ª Dr.ª Maria Margarida dos Prazeres Reis 2015 Acknowledgements For the completion of the present work, the support of the Microbial Ecology and Evolution (MicroEcoEvo) research group at the CCMAR was crucial. Firstly, I thank Rodrigo Costa, my supervisor, who drew me into the field of microbial ecology of marine sponges and posed me the great challenge of tackling the EMP dataset. Furthermore, I am thankful for all the enthusiasm and opportunities provided and for the immense patience! Gianmaria Califano, now in Jena, Austria, and Asunción Lago- Lestón dispensed precious time and patience in the starting phase of this thesis. I further thank Elham Karimi for the help in the laboratory and for our relaxing coffee talks! Tina Keller-Costa, Telma Franco and more recently Miguel Ramos, along with the abovementioned, are all part of the MicroEcoEvo team, to whom I thank for a wonderful first medium-term experience in a laboratory! I admittedly started my Biology Bsc. at the University of Algarve not being fond of any biological entity smaller than 2cm. It was Prof. Margarida Reis (Microbial and Molecular Ecology Laboratory, CIMA, UAlg) who showed me that ‘microbes can do anything’ and went on to accepting the challenge of supervising my Bsc. Technical and Scientific Project. I therefore thank her for introducing me to Microbiology in the best way possible. For the completeness of this work, Lucas Moitinho-Silva (currently at the University of South Wales, Australia), was essential in introducing me to R scripting whilst finishing his PhD at Wüezburg University, Germany. -
UCLA Electronic Theses and Dissertations
UCLA UCLA Electronic Theses and Dissertations Title Comparative and developmental genomics in the moon jellyfish Aurelia species 1 Permalink https://escholarship.org/uc/item/92p1s9r5 Author Gold, David Publication Date 2014 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA Los Angeles Comparative and developmental genomics in the moon jellyfish Aurelia species 1 A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Biology by David Adler Gold 2014 © Copyright by David Adler Gold 2014 ABSTRACT OF THE DISSERTATION Comparative and developmental genomics in the moon jellyfish Aurelia species 1 by David Adler Gold Doctor of Philosophy in Biology University of California, Los Angeles, 2014 Professor David K. Jacobs, Chair This dissertation focuses on the transcriptome of the moon jellyfish (Aurelia sp.1). As the chapters progress, larger sets of genes are analyzed, and the work becomes decreasingly comparative in nature, and increasingly focused on Aurelia. In the first chapter, I analyze the POU-class genes. I begin by using comparative genomics and “gene fishing” to resolve the topology of the POU gene tree. I then use ancestral state reconstruction to map the most likely changes in amino acid evolution for the conserved protein domains. Four of the six POU families evolved before the last common ancestor of living animals—doubling previous estimates—and was followed by extensive clade-specific gene loss. POU families best understood for their generic roles in cell-type regulation and stem cell pluripotency (POU2, POU5) show the largest number of nonsynonymous mutations, suggestive of functional evolution, while those better known for specifying subsets of neural and hormone- producing cell types (POU1, POU3) appear more similar to the ancestral protein.