Hemolytic Activity in Relation to the Photosynthetic System in Chattonella Marina and Chattonella Ovata
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Toxicity Equivalence Factors for Marine Biotoxins Associated with Bivalve Molluscs TECHNICAL PAPER
JOINT FAO/WHO Toxicity Equivalency Factors for Marine Biotoxins Associated with Bivalve Molluscs TECHNICAL PAPER Cover photograph: © FAOemergencies JOINT FAO/WHO Toxicity equivalence factors for marine biotoxins associated with bivalve molluscs TECHNICAL PAPER FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS WORLD HEALTH ORGANIZATION ROME, 2016 Recommended citation: FAO/WHO. 2016. Technical paper on Toxicity Equivalency Factors for Marine Biotoxins Associated with Bivalve Molluscs. Rome. 108 pp. The designations employed and the presentation of material in this publication do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) or of the World Health Organization (WHO) concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these are or have been endorsed or recommended by FAO or WHO in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by FAO and WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either expressed or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall FAO and WHO be liable for damages arising from its use. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
(7) Chrysophyta Golden-Brown Algae
PLANT GROUPS xanthophyta PLANT GROUPS (7) Chrysophyta Golden-brown Algae General characteristic of the Chrysophyta Habitat Aquatic mainly fresh water Pigments Chlorophyll (a & c), β-carotene & Fucoxanthin Food reserve Fat (Leucosin) Cell wall Cellulose, Hemicellulose often with siliceous scales Growth form Flagellate, Coccoid, Colonial rarely filamentous Flagella Two unequal in length & one of them has tripartite hairs Reproduction Asexual, Sexual Chrysophyta, or golden-brown algae, are common microscopic in fresh water. Some species are colorless, but the vast majority is photosynthetic. As such, they are particularly important in lakes, where they may be the primary source of food for zooplankton. They are not considered truly autotrophic by some biologists because nearly all chrysophyta become facultatively heterotrophic in the absence of adequate light, or in the presence of plentiful dissolved food. When this occurs, the chrysoplast atrophies and the alga may turn predator, feeding on bacteria or diatoms. 1 PLANT GROUPS xanthophyta Division Chrysophyta Class Chrysophyceae Order Ochromonadales Family Ochromonadaceae Genus Ochromonas Ochromonas single-celled naked with two unequal flagella cells spherical cylindrical to pyriform. Cells with 1-2 (rarely more) chloroplasts, with or without an eyespot and/or Pyrenoid chloroplasts sometimes much reduced and pale or completely lost after abnormal division. 2 PLANT GROUPS xanthophyta Division Chrysophyta Class Chrysophyceae Family Synuraceae Genus Mallomonas Mallomonas Single-cell, flagellates, -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
The Origin of Alternation of Generations in Land Plants
Theoriginof alternation of generations inlandplants: afocuson matrotrophy andhexose transport Linda K.E.Graham and LeeW .Wilcox Department of Botany,University of Wisconsin, 430Lincoln Drive, Madison,WI 53706, USA (lkgraham@facsta¡.wisc .edu ) Alifehistory involving alternation of two developmentally associated, multicellular generations (sporophyteand gametophyte) is anautapomorphy of embryophytes (bryophytes + vascularplants) . Microfossil dataindicate that Mid ^Late Ordovicianland plants possessed such alifecycle, and that the originof alternationof generationspreceded this date.Molecular phylogenetic data unambiguously relate charophyceangreen algae to the ancestryof monophyletic embryophytes, and identify bryophytes as early-divergentland plants. Comparison of reproduction in charophyceans and bryophytes suggests that the followingstages occurredduring evolutionary origin of embryophytic alternation of generations: (i) originof oogamy;(ii) retention ofeggsand zygotes on the parentalthallus; (iii) originof matrotrophy (regulatedtransfer ofnutritional and morphogenetic solutes fromparental cells tothe nextgeneration); (iv)origin of a multicellularsporophyte generation ;and(v) origin of non-£ agellate, walled spores. Oogamy,egg/zygoteretention andmatrotrophy characterize at least some moderncharophyceans, and arepostulated to represent pre-adaptativefeatures inherited byembryophytes from ancestral charophyceans.Matrotrophy is hypothesizedto have preceded originof the multicellularsporophytes of plants,and to represent acritical innovation.Molecular -
Ectocarpus: an Evo‑Devo Model for the Brown Algae Susana M
Coelho et al. EvoDevo (2020) 11:19 https://doi.org/10.1186/s13227-020-00164-9 EvoDevo REVIEW Open Access Ectocarpus: an evo-devo model for the brown algae Susana M. Coelho1* , Akira F. Peters2, Dieter Müller3 and J. Mark Cock1 Abstract Ectocarpus is a genus of flamentous, marine brown algae. Brown algae belong to the stramenopiles, a large super- group of organisms that are only distantly related to animals, land plants and fungi. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity. For many years, little information was available concerning the molecular mechanisms underlying multicellular development in the brown algae, but this situation has changed with the emergence of Ectocarpus as a model brown alga. Here we summarise some of the main questions that are being addressed and areas of study using Ectocarpus as a model organism and discuss how the genomic information, genetic tools and molecular approaches available for this organism are being employed to explore developmental questions in an evolutionary context. Keywords: Ectocarpus, Life-cycle, Sex determination, Gametophyte, Sporophyte, Brown algae, Marine, Complex multicellularity, Phaeoviruses Natural habitat and life cycle Ectocarpus is a cosmopolitan genus, occurring world- Ectocarpus is a genus of small, flamentous, multicellu- wide in temperate and subtropical regions, and has been lar, marine brown algae within the order Ectocarpales. collected on all continents except Antarctica [1]. It is pre- Brown algae belong to the stramenopiles (or Heter- sent mainly on rocky shores where it grows on abiotic okonta) (Fig. 1a), a large eukaryotic supergroup that (rocks, pebbles, dead shells) and biotic (other algae, sea- is only distantly related to animals, plants and fungi. -
Algal Toxic Compounds and Their Aeroterrestrial, Airborne and Other Extremophilic Producers with Attention to Soil and Plant Contamination: a Review
toxins Review Algal Toxic Compounds and Their Aeroterrestrial, Airborne and other Extremophilic Producers with Attention to Soil and Plant Contamination: A Review Georg G¨аrtner 1, Maya Stoyneva-G¨аrtner 2 and Blagoy Uzunov 2,* 1 Institut für Botanik der Universität Innsbruck, Sternwartestrasse 15, 6020 Innsbruck, Austria; [email protected] 2 Department of Botany, Faculty of Biology, Sofia University “St. Kliment Ohridski”, 8 blvd. Dragan Tsankov, 1164 Sofia, Bulgaria; mstoyneva@uni-sofia.bg * Correspondence: buzunov@uni-sofia.bg Abstract: The review summarizes the available knowledge on toxins and their producers from rather disparate algal assemblages of aeroterrestrial, airborne and other versatile extreme environments (hot springs, deserts, ice, snow, caves, etc.) and on phycotoxins as contaminants of emergent concern in soil and plants. There is a growing body of evidence that algal toxins and their producers occur in all general types of extreme habitats, and cyanobacteria/cyanoprokaryotes dominate in most of them. Altogether, 55 toxigenic algal genera (47 cyanoprokaryotes) were enlisted, and our analysis showed that besides the “standard” toxins, routinely known from different waterbodies (microcystins, nodularins, anatoxins, saxitoxins, cylindrospermopsins, BMAA, etc.), they can produce some specific toxic compounds. Whether the toxic biomolecules are related with the harsh conditions on which algae have to thrive and what is their functional role may be answered by future studies. Therefore, we outline the gaps in knowledge and provide ideas for further research, considering, from one side, Citation: G¨аrtner, G.; the health risk from phycotoxins on the background of the global warming and eutrophication and, ¨а Stoyneva-G rtner, M.; Uzunov, B. -
23.3 Groups of Protists
Chapter 23 | Protists 639 cysts that are a protective, resting stage. Depending on habitat of the species, the cysts may be particularly resistant to temperature extremes, desiccation, or low pH. This strategy allows certain protists to “wait out” stressors until their environment becomes more favorable for survival or until they are carried (such as by wind, water, or transport on a larger organism) to a different environment, because cysts exhibit virtually no cellular metabolism. Protist life cycles range from simple to extremely elaborate. Certain parasitic protists have complicated life cycles and must infect different host species at different developmental stages to complete their life cycle. Some protists are unicellular in the haploid form and multicellular in the diploid form, a strategy employed by animals. Other protists have multicellular stages in both haploid and diploid forms, a strategy called alternation of generations, analogous to that used by plants. Habitats Nearly all protists exist in some type of aquatic environment, including freshwater and marine environments, damp soil, and even snow. Several protist species are parasites that infect animals or plants. A few protist species live on dead organisms or their wastes, and contribute to their decay. 23.3 | Groups of Protists By the end of this section, you will be able to do the following: • Describe representative protist organisms from each of the six presently recognized supergroups of eukaryotes • Identify the evolutionary relationships of plants, animals, and fungi within the six presently recognized supergroups of eukaryotes • Identify defining features of protists in each of the six supergroups of eukaryotes. In the span of several decades, the Kingdom Protista has been disassembled because sequence analyses have revealed new genetic (and therefore evolutionary) relationships among these eukaryotes. -
Monitoreo De Microalgas De Ambientes Costeros De La Provincia De Buenos Aires Y Monitoreo De Toxinas En Moluscos Bivalvos
PROYECTO MARCO MONITOREO DE MICROALGAS DE AMBIENTES COSTEROS DE LA PROVINCIA DE BUENOS AIRES Y MONITOREO DE TOXINAS EN MOLUSCOS BIVALVOS Directora Científica: Eugenia A. Sar1 Coordinación Técnica: Andrea Lavigne2, Ramiro Duffard2 Grupo responsable: Inés Sunesen1, Andrea Lavigne2 Grupo responsable de muestreo: Inés Sunesen1, Andrea Lavigne2 1 Departamento Científico Ficología, Facultad de Ciencias Naturales y Museo, UNLP 2 Ministerio de Asuntos Agrarios, Dirección Provincial de Pesca. MORTANDAD MASIVA DE SARACAS (BREVOORTIA AUREA) EN LA PROVINCIA DE BUENOS AIRES INTRODUCCIÓN A partir del 4 de marzo se produjo una varazón masiva de saracas, Brevoortia aurea, en el área costera de la Provincia de Buenos Aires entre Samborombón y Mar Azul, República Argentina y en el área costera de los Departamentos de Canelones y Montevideo, República Oriental del Uruguay. Tanto el Instituto Nacional de Investigaciones y Desarrollo Pesquero (INIDEP) asesora de la Subsecretaría de Pesca y Acuicultura de la Nación (SSPyA), del Consejo Federal Pesquero (CFP) y de la Cancillería Argentina, Argentina, como la Dirección Nacional de Recursos Acuáticos (DINARA) dependiente del Ministerio de Agricultura Ganadería y Pesca de Uruguay determinaron que la presunción de que el evento se hubiera producido por un descarte de la flota pesquera comercial podía ser desestimada. La estimación de biomasa de peces muertos depositados en la costa argentina fue de 3000 toneladas (informe del INIDEP del 19 de marzo), sin embargo varazones menores continúan aún y fueron observadas en Mar Azul durante la campaña del del 30-03-15 (cuyo análisis de muestras está en procesamiento). Para esas fechas algunos peces llegaban vivos a la costa con señales de asfixia, por lo que no puede presumirse que hubieran muerto en aguas próximas a las playas tiempo antes. -
Fluorescence in Situ Hybridization Using 18S Rrna- Targeted Probe for Specific Detection of Thraustochytrids (Labyrinthulomycetes)
Plankton Benthos Res 2(2): 91–97, 2007 Plankton & Benthos Research © The Plankton Society of Japan Fluorescence in situ hybridization using 18S rRNA- targeted probe for specific detection of thraustochytrids (Labyrinthulomycetes) YOSHITAKE TAKAO1, YUJI TOMARU1, KEIZO NAGASAKI1, YUKARI SASAKURA2, RINKA YOKOYAMA2 & DAISKE HONDA2* 1 National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2–17–5 Maruishi, Hatsukaichi, Hiroshima 739–0452, Japan 2 Department of Biology, Faculty of Science and Engineering, Konan University, 8–9–1 Okamoto, Higashinada, Kobe 658–8501, Japan Received 5 December 2006; Accepted 13 March 2007 Abstract: Thraustochytrids are cosmopolitan osmotrophic or heterotrophic microorganisms that play, especially in coastal ecosystems, important roles as decomposers and producers of polyunsaturated fatty acids (PUFA), and are also known to be pathogens of mollusks and seaweeds. However, because of shortcomings in the current methods for detec- tion and enumeration of thraustochytrids, very little information is available concerning their natural dynamics and eco- logical roles. In this study, we propose a new method for detecting thraustochytrids using a fluorescent 18S ribosomal RNA (rRNA)-targeted oligonucleotide probe (Probe ThrFL1). Detection of thraustochytrids by means of the fluores- cence in situ hybridization (FISH) technique with ThrFL1 was specific; the probe did not react with the other stra- menopile organisms or with the dinoflagellate that was tested. Because of the high specificity and intense reactivity, the FISH protocol is expected to be a strong tool for examining ecological features of thraustochytrids. Key words: Aurantiochytrium, Decomposer, FISH method, Schizochytrium, Thraustochytrium tance as decomposers (Raghukumar et al. 2001). In addi- Introduction tion, due to their high productivity of PUFAs such as do- Thraustochytrids are cosmopolitan apochlorotic stra- cosahexaenoic acid and docosapentaenoic acid (Nakahara menopile protists classified in the class Labyrinthu- et al.