Lichen Polysaccharides
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The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
Checklist of Lichenicolous Fungi and Lichenicolous Lichens of Svalbard, Including New Species, New Records and Revisions
Herzogia 26 (2), 2013: 323 –359 323 Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions Mikhail P. Zhurbenko* & Wolfgang von Brackel Abstract: Zhurbenko, M. P. & Brackel, W. v. 2013. Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions. – Herzogia 26: 323 –359. Hainesia bryonorae Zhurb. (on Bryonora castanea), Lichenochora caloplacae Zhurb. (on Caloplaca species), Sphaerellothecium epilecanora Zhurb. (on Lecanora epibryon), and Trimmatostroma cetrariae Brackel (on Cetraria is- landica) are described as new to science. Forty four species of lichenicolous fungi (Arthonia apotheciorum, A. aspicili- ae, A. epiphyscia, A. molendoi, A. pannariae, A. peltigerina, Cercidospora ochrolechiae, C. trypetheliza, C. verrucosar- ia, Dacampia engeliana, Dactylospora aeruginosa, D. frigida, Endococcus fusiger, E. sendtneri, Epibryon conductrix, Epilichen glauconigellus, Lichenochora coppinsii, L. weillii, Lichenopeltella peltigericola, L. santessonii, Lichenostigma chlaroterae, L. maureri, Llimoniella vinosa, Merismatium decolorans, M. heterophractum, Muellerella atricola, M. erratica, Pronectria erythrinella, Protothelenella croceae, Skyttella mulleri, Sphaerellothecium parmeliae, Sphaeropezia santessonii, S. thamnoliae, Stigmidium cladoniicola, S. collematis, S. frigidum, S. leucophlebiae, S. mycobilimbiae, S. pseudopeltideae, Taeniolella pertusariicola, Tremella cetrariicola, Xenonectriella lutescens, X. ornamentata, -
Umbilicariaceae Phylogeny TAXON 66 (6) • December 2017: 1282–1303
Davydov & al. • Umbilicariaceae phylogeny TAXON 66 (6) • December 2017: 1282–1303 Umbilicariaceae (lichenized Ascomycota) – Trait evolution and a new generic concept Evgeny A. Davydov,1 Derek Peršoh2 & Gerhard Rambold3 1 Altai State University, Lenin Ave. 61, Barnaul, 656049 Russia 2 Ruhr-Universität Bochum, AG Geobotanik, Gebäude ND 03/170, Universitätsstraße 150, 44801 Bochum, Germany 3 University of Bayreuth, Plant Systematics, Mycology Dept., Universitätsstraße 30, NW I, 95445 Bayreuth, Germany Author for correspondence: Evgeny A. Davydov, [email protected] ORCID EAD, http://orcid.org/0000-0002-2316-8506; DP, http://orcid.org/0000-0001-5561-0189 DOI https://doi.org/10.12705/666.2 Abstract To reconstruct hypotheses on the evolution of Umbilicariaceae, 644 sequences from three independent DNA regions were used, 433 of which were newly produced. The study includes a representative fraction (presumably about 80%) of the known species diversity of the Umbilicariaceae s.str. and is based on the phylograms obtained using maximum likelihood and a Bayesian phylogenetic inference framework. The analyses resulted in the recognition of eight well-supported clades, delimited by a combination of morphological and chemical features. None of the previous classifications within Umbilicariaceae s.str. were supported by the phylogenetic analyses. The distribution of the diagnostic morphological and chemical traits against the molecular phylogenetic topology revealed the following patterns of evolution: (1) Rhizinomorphs were gained at least four times independently and are lacking in most clades grouping in the proximity of Lasallia. (2) Asexual reproductive structures, i.e., thalloconidia and lichenized dispersal units, appear more or less mutually exclusive, being restricted to different clades. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Distribution Patterns of Haplotypes for Symbionts from Umbilicaria Esculenta and U
Cao et al. BMC Microbiology (2015) 15:212 DOI 10.1186/s12866-015-0527-0 RESEARCH ARTICLE Open Access Distribution patterns of haplotypes for symbionts from Umbilicaria esculenta and U. muehlenbergii reflect the importance of reproductive strategy in shaping population genetic structure Shunan Cao1,2†, Fang Zhang1†, Chuanpeng Liu2, Zhihua Hao3, Yuan Tian4, Lingxiang Zhu5 and Qiming Zhou2,6* Abstract Background: The diversity of lichen fungal components and their photosynthetic partners reflects both ecological and evolutionary factors. In present study, molecular investigations of the internal transcribed spacer of the nuclear ribosomal DNA (ITS nrDNA) region were conducted to analyze the genetic diversity of Umbilicaria esculenta and U. muehlenbergii together with their associated green algae. Result: It was here demonstrated that the reproductive strategy is a principal reason for fungal selectivity to algae. U. muehlenbergii, which disperses via sexual spores, exhibits lower selectivity to its photosynthetic partners than U. esculenta, which has a vegetative reproductive strategy. The difference of genotypic diversity (both fungal and algal) between these two Umbilicaria species is low, although their nucleotide diversity can vary greatly. Conclusions: The present study illustrates that lichen-forming fungi with sexual reproductive strategies are less selective with respect to their photobionts; and reveals that both sexual and vegetative reproduction allow lichens to generate similar amounts of diversity to adapt to the environments. The current study will be helpful for elucidating how lichens with different reproductive strategies adapt to changing environments. Keywords: AMOVA, Haplotype, Lichen, Mycobiont, Photobiont, Phylogenetic analysis Background communities, there seems to be a photobiont pool that Lichens are intimate and long-lived symbioses between allows different lichen species to share their photobionts photobionts (green alga or cyanobacteria) and myco- [3]. -
The Macroevolutionary Dynamics of Symbiotic and Phenotypic Diversification in Lichens
The macroevolutionary dynamics of symbiotic and phenotypic diversification in lichens Matthew P. Nelsena,1, Robert Lückingb, C. Kevin Boycec, H. Thorsten Lumbscha, and Richard H. Reea aDepartment of Science and Education, Negaunee Integrative Research Center, The Field Museum, Chicago, IL 60605; bBotanischer Garten und Botanisches Museum, Freie Universität Berlin, 14195 Berlin, Germany; and cDepartment of Geological Sciences, Stanford University, Stanford, CA 94305 Edited by Joan E. Strassmann, Washington University in St. Louis, St. Louis, MO, and approved July 14, 2020 (received for review February 6, 2020) Symbioses are evolutionarily pervasive and play fundamental roles macroevolutionary consequences of ant–plant interactions (15–19). in structuring ecosystems, yet our understanding of their macroevo- However, insufficient attention has been paid to one of the most lutionary origins, persistence, and consequences is incomplete. We iconic examples of symbiosis (20, 21): Lichens. traced the macroevolutionary history of symbiotic and phenotypic Lichens are stable associations between a mycobiont (fungus) diversification in an iconic symbiosis, lichens. By inferring the most and photobiont (eukaryotic alga or cyanobacterium). The pho- comprehensive time-scaled phylogeny of lichen-forming fungi (LFF) tobiont supplies the heterotrophic fungus with photosynthetically to date (over 3,300 species), we identified shifts among symbiont derived carbohydrates, while the mycobiont provides the pho- classes that broadly coincided with the convergent -
Phylogeny, Taxonomy and Diversification Events in the Caliciaceae
Fungal Diversity DOI 10.1007/s13225-016-0372-y Phylogeny, taxonomy and diversification events in the Caliciaceae Maria Prieto1,2 & Mats Wedin1 Received: 21 December 2015 /Accepted: 19 July 2016 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Although the high degree of non-monophyly and Calicium pinicola, Calicium trachyliodes, Pseudothelomma parallel evolution has long been acknowledged within the occidentale, Pseudothelomma ocellatum and Thelomma mazaediate Caliciaceae (Lecanoromycetes, Ascomycota), a brunneum. A key for the mazaedium-producing Caliciaceae is natural re-classification of the group has not yet been accom- included. plished. Here we constructed a multigene phylogeny of the Caliciaceae-Physciaceae clade in order to resolve the detailed Keywords Allocalicium gen. nov. Calicium fossil . relationships within the group, to propose a revised classification, Divergence time estimates . Lichens . Multigene . and to perform a dating study. The few characters present in the Pseudothelomma gen. nov available fossil and the complex character evolution of the group affects the interpretation of morphological traits and thus influ- ences the assignment of the fossil to specific nodes in the phy- Introduction logeny, when divergence time analyses are carried out. Alternative fossil assignments resulted in very different time es- Caliciaceae is one of several ascomycete groups characterized timates and the comparison with the analysis based on a second- by producing prototunicate (thin-walled and evanescent) asci ary calibration demonstrates that the most likely placement of the and a mazaedium (an accumulation of loose, maturing spores fossil is close to a terminal node rather than a basal placement in covering the ascoma surface). -
Keanekaragaman Lichenes Di Kawasan Geothermal Kecamatan Wih Pesam Kabupaten Bener Meriah Sebagai Referensi Mata Kuliah Mikologi
KEANEKARAGAMAN LICHENES DI KAWASAN GEOTHERMAL KECAMATAN WIH PESAM KABUPATEN BENER MERIAH SEBAGAI REFERENSI MATA KULIAH MIKOLOGI SKRIPSI Diajukan oleh: JASIMATIKA NIM. 150207091 Program Studi Pendidikan Biologi FAKULTAS TARBIYAH DAN KEGURUAN UNIVERSITAS ISLAM NEGERI AR-RANIRY DARUSSALAM BANDA ACEH 2019 M/ 1440 H ii iii iv ABSTRAK Keanekaragaman adalah gabungan antar jumlah spesies dan jumlah individu masing-masing spesies dalam satu komunitas salah satunya Lichenes. Lichenes merupakan asosiasi antara jamur dan alga. Lichenes tumbuh di bebatuan, di kulit pohon, di tanah dan di daun sebagai habitatnya. Penelitian Lichenes sudah sering dilakukan namun lokasi yang diteliti berbeda dari peneliti sebelumnya. Tujuan penelitian ini adalah untuk mengetahui: (1) Jenis-jenis Lichenes, (2) Indeks keanekaragaman Lichenes, (3) Manfaat hasil penelitian keanekaragaman Lichenes dan (4) Respon mahasiswa terhadap output hasil penelitian keanekaragaman Lichenes. Penelitian ini dilakukan di kawasan geothermal Kecamatan Wih Pesam Kabupaten Bener Meriah. Penelitian ini menggunakan metode Line transek dan Petak kuadrat dengan teknik pengambilan sampel secara purposive sampling. Analisis data dilakukan secara kualitatif dan kuantitatif. Dari hasil penelitian ditemukan sebanyak 3799 individu dari 23 jenis yang termasuk ke dalam 12 famili. Keanekaragaman Lichenes di lokasi penelitian tergolong tinggi, dengan indeks keanekaragaman H’= 3.0045 menurut kriteria Shannon-Wiener. Pemanfaatan hasil penelitian dibuat dalam bentuk buku ajar dan poster sebagai referensi mata kuliah Mikologi. Respon mahasiswa terhadap output hasil penelitian tergolong dalam kategori sangat tinggi dengan nilai persentase 84,70%. Kata Kunci: Keanekaragaman, Lichenes, Referensi, Kawasan Geothermal Kecamatan Wih Pesam v KATA PENGANTAR Assalamua’laikum Warahmatullahi Wabarakatuh Segala puji dan syukur penulis panjatkan ke hadirat Allah swt, yang telah memberikan rahmat dan hidayah-Nya, sehingga penulis dapat menyelesaikan skripsi ini dengan baik. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Mountain Crab-Eye Acroscyphus Sphaerophoroides
COSEWIC Assessment and Status Report on the Mountain Crab-eye Acroscyphus sphaerophoroides in Canada SPECIAL CONCERN 2016 COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: COSEWIC. 2016. COSEWIC assessment and status report on the Mountain Crab-eye Acroscyphus sphaerophoroides in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. xi + 47 pp. (http://www.registrelep-sararegistry.gc.ca/default_e.cfm). Production note: COSEWIC would like to acknowledge Paula Bartemucci, Jim Pojar and Patrick Williston for writing the status report on the Mountain Crab-eye (Acroscyphus sphaerophoroides) in Canada, prepared under contract with Environment Canada. This report was overseen and edited by David Richardson, Co-chair of the COSEWIC Mosses and Lichens Subcommittee. For additional copies contact: COSEWIC Secretariat c/o Canadian Wildlife Service Environment Canada Ottawa, ON K1A 0H3 Tel.: 819-938-4125 Fax: 819-938-3984 E-mail: [email protected] http://www.cosewic.gc.ca Également disponible en français sous le titre Ếvaluation et Rapport de situation du COSEPAC sur L’acroscyphe des montagnes (Acroscyphus sphaerophoroides) au Canada. Cover illustration/photo: Mountain Crab-eye (Acroscyphus sphaerophoroides), courtesy of Paula Bartemucci. Her Majesty the Queen in Right of Canada, 2016. Catalogue No. CW69-14/734-2016E-PDF ISBN 978-0-660-05569-5 COSEWIC Assessment Summary Assessment Summary – May 2016 Common name Mountain Crab-eye Scientific name Acroscyphus sphaerophoroides Status Special Concern Reason for designation This charismatic lichen forms pale gray to yellow gray coral-like cushions. -
The Genera Canomaculina and Parmotrema (Parmeliaceae, Lichenized Ascomycota) in Curitiba, Paraná State, Brazil SIONARA ELIASARO1,2 and CRISTINE G
Revista Brasil. Bot., V.26, n.2, p.239-247, jun. 2003 The genera Canomaculina and Parmotrema (Parmeliaceae, Lichenized Ascomycota) in Curitiba, Paraná State, Brazil SIONARA ELIASARO1,2 and CRISTINE G. DONHA1 (received: October 2, 2002; accepted: March 19, 2003) ABSTRACT – (The genera Canomaculina and Parmotrema (Parmeliaceae, Lichenized Ascomycota) in Curitiba, Paraná State, Brazil). The present study describes the species of Canomaculina Elix & Hale and Parmotrema A. Massal. occuring in Curitiba, Paraná. Identification keys, descriptions of the species, and comments are presented. Canomaculina conferenda (Hale) Elix, Canomaculina pilosa (Stizemb.) Elix & Hale, Parmotrema catarinae Hale and Parmotrema eciliatum (Nyl.) Hale are reported for the first time to Paraná State. Key words - Brazil, Curitiba, lichens, Paraná, Parmeliaceae RESUMO – (Os gêneros Canomaculina e Parmotrema (Parmeliaceae, Ascomycota Liquenizados) em Curitiba, Estado do Paraná, Brasil). Este estudo descreve as espécies dos gêneros Canomaculina Elix & Hale e Parmotrema A. Massal. ocorrentes em Curitiba, Paraná. São apresentadas chaves de identificação, descrições e comentários sobre as espécies. Canomaculina conferenda (Hale) Elix, Canomaculina pilosa (Stizemb.) Elix & Hale, Parmotrema catarinae Hale e Parmotrema eciliatum (Nyl.) Hale são citadas pela primeira vez para o Estado do Paraná. Palavras-chave - Brasil, Curitiba, liquens, Paraná, Parmeliaceae Introduction dimorphous rhizines, that are absent in the closely related genera Parmotrema and Rimelia. Parmotrema The lichen flora of Curitiba, a city that has 21 is a genus characterised by large thalli with broad lobes, million m2 of parkland maintained within the urban commonly with a broad erhizinate marginal zone on perimeter (Curitiba 2002), although abundant and the lower surface and the upper surface usually diversified, has not yet been systematically surveyed. -
Marine Cyanolichens from Different Littoral Zones Are
bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Marine cyanolichens from different littoral 2 zones are associated with distinct bacterial 3 communities 4 Nyree J. West*1, Delphine Parrot2†, Claire Fayet1, Martin Grube3, Sophie Tomasi2 5 and Marcelino T. Suzuki4 6 1 Sorbonne Universités, UPMC Univ Paris 06, CNRS, Observatoire Océanologique de Banyuls (OOB), 7 F-66650, Banyuls sur mer, France 8 2 UMR CNRS 6226, Institut des Sciences chimiques de Rennes, Equipe CORINT « Chimie Organique 9 et Interfaces », UFR Sciences Pharmaceutiques et Biologiques, Univ. Rennes 1, Université Bretagne 10 Loire, F-35043, Rennes, France 11 3 Institute of Plant Sciences, University of Graz, A-8010 Graz, Austria 12 4 Sorbonne Universités, UPMC Univ. Paris 06, CNRS, Laboratoire de Biodiversité et Biotechnologies 13 Microbiennes (LBBM), Observatoire Océanologique, F-66650, Banyuls sur mer, France 14 †Current address: GEOMAR Helmholtz Centre for Ocean Research Kiel, Research Unit Marine 15 Natural Products Chemistry, GEOMAR Centre for Marine Biotechnology, 24106 Kiel, Germany 16 *Corresponding author: 17 Observatoire Océanologique de Banyuls sur mer, F-66650 Banyuls sur mer, France 18 19 Tel: +33 (0)4 30 19 24 29, Fax: +33 (0)4 68 88 73 98 20 Email: [email protected] 21 1 bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018.