Mountain Crab-Eye Acroscyphus Sphaerophoroides
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Phylogeny, Taxonomy and Diversification Events in the Caliciaceae
Fungal Diversity DOI 10.1007/s13225-016-0372-y Phylogeny, taxonomy and diversification events in the Caliciaceae Maria Prieto1,2 & Mats Wedin1 Received: 21 December 2015 /Accepted: 19 July 2016 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Although the high degree of non-monophyly and Calicium pinicola, Calicium trachyliodes, Pseudothelomma parallel evolution has long been acknowledged within the occidentale, Pseudothelomma ocellatum and Thelomma mazaediate Caliciaceae (Lecanoromycetes, Ascomycota), a brunneum. A key for the mazaedium-producing Caliciaceae is natural re-classification of the group has not yet been accom- included. plished. Here we constructed a multigene phylogeny of the Caliciaceae-Physciaceae clade in order to resolve the detailed Keywords Allocalicium gen. nov. Calicium fossil . relationships within the group, to propose a revised classification, Divergence time estimates . Lichens . Multigene . and to perform a dating study. The few characters present in the Pseudothelomma gen. nov available fossil and the complex character evolution of the group affects the interpretation of morphological traits and thus influ- ences the assignment of the fossil to specific nodes in the phy- Introduction logeny, when divergence time analyses are carried out. Alternative fossil assignments resulted in very different time es- Caliciaceae is one of several ascomycete groups characterized timates and the comparison with the analysis based on a second- by producing prototunicate (thin-walled and evanescent) asci ary calibration demonstrates that the most likely placement of the and a mazaedium (an accumulation of loose, maturing spores fossil is close to a terminal node rather than a basal placement in covering the ascoma surface). -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Phylogeny, Taxonomy and Diversification Events in the Caliciaceae
http://www.diva-portal.org This is the published version of a paper published in Fungal diversity. Citation for the original published paper (version of record): Prieto, M., Wedin, M. (2016) Phylogeny, taxonomy and diversification events in the Caliciaceae.. Fungal diversity https://doi.org/10.1007/s13225-016-0372-y Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-2031 Fungal Diversity (2017) 82:221–238 DOI 10.1007/s13225-016-0372-y Phylogeny, taxonomy and diversification events in the Caliciaceae Maria Prieto1,2 & Mats Wedin1 Received: 21 December 2015 /Accepted: 19 July 2016 /Published online: 1 August 2016 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Although the high degree of non-monophyly and Calicium pinicola, Calicium trachyliodes, Pseudothelomma parallel evolution has long been acknowledged within the occidentale, Pseudothelomma ocellatum and Thelomma mazaediate Caliciaceae (Lecanoromycetes, Ascomycota), a brunneum. A key for the mazaedium-producing Caliciaceae is natural re-classification of the group has not yet been accom- included. plished. Here we constructed a multigene phylogeny of the Caliciaceae-Physciaceae clade in order to resolve the detailed Keywords Allocalicium gen. nov. Calicium fossil . relationships within the group, to propose a revised classification, Divergence time estimates . Lichens . Multigene . and to perform a dating study. The few characters present in the Pseudothelomma gen. nov available fossil and the complex character evolution of the group affects the interpretation of morphological traits and thus influ- ences the assignment of the fossil to specific nodes in the phy- Introduction logeny, when divergence time analyses are carried out. -
Lichen Polysaccharides
Chapter 8 Lichen Polysaccharides Desiree Nedra Karunaratne, R.G.U. Jayalal and V. Karunaratne Additional information is available at the end of the chapter http://dx.doi.org/10.5772/51021 1. Introduction Lichens are symbiotic organisms composed of a fungal partner, the mycobiont, and one or more photosynthetic partners, the photobiont, which may be either a green alga or a cyanobacterium (Nash III, 1996; Wolseley and Aguirre-Hudson, 1994 and Yoshimura, 2004). The mycobiont in this combination is an ascomycete or a basidiomycete and the photobiont a green alga or a cyanobacterium. Some lichen species can contain more than one green algal species as photobionts (Friedl and Gärtner, 1988; Friedl, 1989; Ihda et al., 1993). At present, about 13,500 fungal species have been recognized to be involved in lichen symbiosis (Hawksworth et al. 1995; Kirk et al., 2001). However, Sipman and Aptroot (2001) stated that this number could be as high as 20,000 after including “orphaned” species; according to Lumbsch et al., (2011), about 10,000 of lichenized fungi have been estimated as undescribed species. The hyphae of mycobionts are septate, branched, thin or thick walled, and the walls are colourless or variously coloured. It is necessary that the photobiont, which is essentially aquatic in nature, remains protected from desiccation in a lichenized terrestrial condition. The protection is provided by the mycobiont which forms the bulk of the thallus, by the development of specialized hyphal tissues in the form of a cover or cortex over the stratum of the photobiont. The development of the cortex is assumed to be stimulated by the photobiont (Ahmadjian, 1987). -
Phylogeny, Taxonomy and Diversification Events in the Caliciaceae
Fungal Diversity (2017) 82:221–238 DOI 10.1007/s13225-016-0372-y Phylogeny, taxonomy and diversification events in the Caliciaceae Maria Prieto1,2 & Mats Wedin1 Received: 21 December 2015 /Accepted: 19 July 2016 /Published online: 1 August 2016 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Although the high degree of non-monophyly and Calicium pinicola, Calicium trachyliodes, Pseudothelomma parallel evolution has long been acknowledged within the occidentale, Pseudothelomma ocellatum and Thelomma mazaediate Caliciaceae (Lecanoromycetes, Ascomycota), a brunneum. A key for the mazaedium-producing Caliciaceae is natural re-classification of the group has not yet been accom- included. plished. Here we constructed a multigene phylogeny of the Caliciaceae-Physciaceae clade in order to resolve the detailed Keywords Allocalicium gen. nov. Calicium fossil . relationships within the group, to propose a revised classification, Divergence time estimates . Lichens . Multigene . and to perform a dating study. The few characters present in the Pseudothelomma gen. nov available fossil and the complex character evolution of the group affects the interpretation of morphological traits and thus influ- ences the assignment of the fossil to specific nodes in the phy- Introduction logeny, when divergence time analyses are carried out. Alternative fossil assignments resulted in very different time es- Caliciaceae is one of several ascomycete groups characterized timates and the comparison with the analysis based on a second- by producing prototunicate (thin-walled and evanescent) asci ary calibration demonstrates that the most likely placement of the and a mazaedium (an accumulation of loose, maturing spores fossil is close to a terminal node rather than a basal placement in covering the ascoma surface). -
Burrowsia, a New Genus of Lichenized Fungi (Caliciaceae), Plus the New Species B
South African Journal of Botany 132 (2020) 471À481 Contents lists available at ScienceDirect South African Journal of Botany journal homepage: www.elsevier.com/locate/sajb Burrowsia, a new genus of lichenized fungi (Caliciaceae), plus the new species B. cataractae and Scoliciosporum fabisporum, from Mpumalanga, South Africa Alan M. Frydaya,*, Ian D. Medeirosb,c, Stefan J. Siebertd, Nathaniel Popee, Nishanta Rajakarunac,d,f a Herbarium, Department Plant Biology, Michigan State University, East Lansing, MI 48823, USA b Department of Biology, Duke University, Durham, NC 27708, USA c College of the Atlantic, 105 Eden Street, Bar Harbor, ME 04609, USA d Unit for Environmental Sciences and Management, North-West University, Potchefstroom 2520, South Africa e Department of Entomology, Pennsylvania State University, University Park, PA 16802, USA f Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA 93407, USA ARTICLE INFO ABSTRACT Article History: The new genus Burrowsia (Caliciaceae) is proposed to accommodate the new species B. cataractae, which is Received 15 January 2020 known from only a single locality in Mpumalanga, South Africa. Burrowsia is characterized by its pigmented, Accepted 1 June 2020 submuriform ascospores and ascus with an apical tube structure, and also by its DNA sequence data that Available online xxx place it outside related buellioid genera. We also describe the new species Scoliciosporum fabisporum, also known from a single locality in Mpumalanga, which differs from all other species of that genus in having dis- Edited by J Van Staden tinctive kidney-shaped, 0À1-septate ascospores. It is most closely related to the Northern Hemisphere spe- Keywords: cies S. -
The Lichens of British Columbia
Map 116 Map 117 Synalissa Szczawinskia symphorea tsugae Map 118 Map 119 Teloschistes Usnea ceratina contortuplicatus Map 120 Map 121 Usnea Usnea hesperina esperantiana APPENDIX 1 Map 122 Map 123 Usnea nidulans Usnea rigida s. lat s. lat Map 124 Map 125 Usnea rubicunda Usnea trichodea Map 126 Map 127 Zahlbrucknerella Unknown 1 calcarea LICHENS OF BRITISH COLUMBIA, PART 2 – FRUTICOSE SPECIES Map 128 Unknown 2 APPENDIX 1 APPENDIX 2 Excluded species Cladonia apodocarpa Robbins was these reports are based are referable to reported for British Columbia by Klinka other species (T. Ahti, University of et al. (1989), but no specimens have been Helsinki, pers. comm., 1998). seen. This eastern North American species is not expected to occur in the west. Cladonia humilis (With.) J.R. Laundon was included in the British Columbia Cladonia caespiticia (Pers.) Flörke was checklist of Noble et al. (1987), though no first reported for British Columbia by specimens were found at CANL, UBC, or VC. Otto (1968) and was later confirmed by However, C. humilis has been reliably Noble et al. (1987). Both reports are documented from northern portions of apparently based on a specimen in the American Pacific Northwest (Hammer J. Macoun’s “Canadian Lichens” series 1995), and should be searched for in adja- (No. 495), on deposit at CANL. According cent portions of British Columbia. to the label data, this collection was made “On rocks at Deer Park, Columbia River. Cladonia maxima (Asah.) Ahti was June 6th, 1890.” The record, however, is recorded for the province by Ahti (1980) suspect: C. caespiticia has an essentially and was later included in the checklist of eastern distribution in North America. -
Lichen Biology
This page intentionally left blank Lichen Biology Lichens are symbiotic organisms in which fungi and algae and/or cyanobacteria form an intimate biological union. This diverse group is found in almost all terrestrial habitats from the tropics to polar regions. In this second edition, four completely new chapters cover recent developments in the study of these fascinating organisms, including lichen genetics and sexual reproduction, stress physiology and symbiosis, and the carbon economy and environmental role of lichens. The whole text has been fully updated, with chapters covering anato- mical, morphological and developmental aspects; the chemistry of the unique secondary metabolites produced by lichens and the contribution of these sub- stances to medicine and the pharmaceutical industry; patterns of lichen photosynthesis and respiration in relation to different environmental condi- tions; the role of lichens in nitrogen fixation and mineral cycling; geographical patterns exhibited by these widespread symbionts; and the use of lichens as indicators of air pollution. This is a valuable reference for both students and researchers interested in lichenology. T H O M A S H . N A S H I I I is Professor of Plant Biology in the School of Life Sciences at Arizona State University. He has over 35 years teaching experience in Ecology, Lichenology and Statistics, and has taught in Austria (Fulbright Fellowship) and conducted research in Australia, Germany (junior and senior von Humbolt Foundation fellowships), Mexico and South America, and the USA. -
The Genus Menegazzia (Parmeliaceae, Iichenized Ascomycetes) in the Tibetan Region
Nova Hedwigia 81 3-4 30) -309 Stuttgart, November 2005 The genus Menegazzia (Parmeliaceae, Iichenized Ascomycetes) in the Tibetan region by Jarle W. Bjerke*' and Waiter ObermayerO *Department of Biology, Faculty of Science, University ofTroms~, N-9037 Troms~, Norway °lnstilllt fiir Pflanzenwissenschaften, Karl-Franzens-Universitat Graz, Hoheigasse 6, A-80 I0 Graz, Austria. With 3 figures Bjerkc, J. W. & W. Obermayer (2005): The gcnus Mellegazzia (Parmeliaceae, lichenized Ascomycetes) in the Tibetan region. - Nova Hedwigia 81: 301-309. Abstract: Material of the genus Mellegazzia from the Tibetan region was revised. Four species were recognized, viz. two fertile (primary) species (M. neolropica ssp. rolllndicwpa, M. primaria) and two sorecliate (secondary) species (M. subsimils, M. lerebraw). Mellegazzia lIeolropica ssp. rOlundicClllx/ is reported for the first time from outside the Neotropics, and M. primaria is reported for the first time from outside Taiwan, from a single locality near Yulong Shan. Menegazzia subsimilis is new to Tibet. The most common species is M. lerebrala. Notes and illustrations of morphological variation, as well as a distribution map. are provided. Key words: Taxonomy, lichens, Parmeliaceae, Mellegazzia, China, Tibet, biogeography Introduction The knowledge of the lichens of the Tibetan region of China is relatively poor. The large area of highland plateaus, valleys and mountain chains influenced by Tibetan culture covers more than 2.5 million square kilometres, and lichen collecting activities have taken place only at scattered localities within this region (Obermayer 2004). The second author made extensive collections from the Tibetan region during two expeditions, one in 1994 and one in 2000. Based on these collections, numerous additions to the lichens of the Tibetan region have been published in a series of papers (see Obermayer 2004 for a list of papers). -
Fruticose Lichens: Structural Diversity, Taxonomic Characteristics and Evolution Alexander A
© © Landesmuseum für Kärnten; download www.landesmuseum.ktn.gv.at/wulfenia; www.zobodat.at Wulfenia 21 (2014): 21–31 Mitteilungen des Kärntner Botanikzentrums Klagenfurt Fruticose lichens: structural diversity, taxonomic characteristics and evolution Alexander A. Notov Summary: A morphological and taxonomical analysis of fruticose lichens has revealed the main characteristics of their structural diversity. The occurrence rate of the fruticose and similar growth forms in various taxa of the current lichen system has been identified. Various ways of origin have been investigated as well as the main directions of the fruticose growth form evolution. Keywords: lichens, fruticose lichens, growth forms, evolution, biomorphology, morphogenesis, structural diversity Lichens are morphologically more diverse than nonlichenized fungi (Zmitrovich 2010). Researchers became interested in lichen morphology and growth forms a long time ago (Krabbe 1883; Zahlbruckner 1896; Elenkin 1907; etc.). Many authors noted the importance and value of such research on various stages of lichenology (Nienburg 1926; Oxner 1974; Poelt 1986; Golubkova & Biazrov 1989; Golubkova 1993; Kotlov 1995; etc.). With the development of morphology new research on lichen morphogenesis (Hammer 1995, 1998a, b, 2000, 2001; Honegger 1991, 2006, 2008; Sanders & de los Ríos 2012; etc.) and ontogenesis has been conducted (Suetina 2001, 2007; Suetina & Glotov 2010; etc.). There is a growing interest in comparing lichens and plants based on their structure and evolution (Sanders 2001). Research on lichen genomes had a profound influence on the development of lichenology. Molecular data have changed our understanding of the phylogeny of many lichen groups (Ekman & Wedin 2000; Ekman 2001; Stenroos et al. 2002a, b; Wiklund & Wedin 2003; Anderson & Ekman 2005; Lumbsch et al. -
A Contribution to the Knowledge on the Lichenological Exploration of the Greater Tibetan Region with a Special Focus on the Impact of Austrian Scientists Or Explorers
A contribution to the knowledge on the lichenological exploration of the greater Tibetan region with a special focus on the impact of Austrian scientists or explorers Walter OBERMAYER Abstract:7KHLQÀXHQFHRIVL[$XVWULDQ RU$XVWULDQERUQ VFLHQWLVWVH[SORUHUVQDPHO\ three lichenologists (Alexander ZAHLBRUCKNER, Josef POELT and Walter OBERMAYER) and three collectors of lichens (Heinrich HANDEL-MAZZETTI, Joseph ROCK and Anton GEBAU- ER) on the knowledge on lichens from the greater Tibetan region is outlined. The contri- butions of some further lichenologists or botanists, of which substantial collection from WKH7LEHWDQUHJLRQDUHKRXVHGLQWKHKHUEDULXP*=8 *UD]$XVWULD DUHEULHÀ\GLVFXVVHG and a list of more recent papers dealing with lichens from the named region is presented. 1. Introduction It should be noted in advance, that the term “greater Tibetan region” is used here in the sense of the area of the former “bod chen” [Tibetan for “Big- Tibet”]), which encompasses the three former provinces of ancient Tibet: 1) h7VDQJ i.e. central and western parts of the province Xizang, including the northwestern regions of Ngari and Changthang); 2) Amdo (i.e. most parts of the province Qinghai, including the Tibetan Autonomous Prefectures of Hai- bei, Huangnan, Hainan, Golog, Yushu and Haixi, and including the Tianzhu Tibetan Autonomous County in the province of Gansu); 3) Kham (i.e. eastern ;L]DQJ QRUWKHUQ<XQQDQDQG ZHVWHUQ 6LFKXDQ LQFOXGLQJ *\DURQJ 'LTLQJ >'rTrQ@7LEHWDQ$XWRQRPRXV3UHIHFWXUHDQGWKH0XOL7LEHWDQ$XWRQRPRXV County). Some further regions with ethnic Tibetan