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Reptile-Like Physiology in Early Jurassic Stem-Mammals
bioRxiv preprint doi: https://doi.org/10.1101/785360; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Reptile-like physiology in Early Jurassic stem-mammals Authors: Elis Newham1*, Pamela G. Gill2,3*, Philippa Brewer3, Michael J. Benton2, Vincent Fernandez4,5, Neil J. Gostling6, David Haberthür7, Jukka Jernvall8, Tuomas Kankanpää9, Aki 5 Kallonen10, Charles Navarro2, Alexandra Pacureanu5, Berit Zeller-Plumhoff11, Kelly Richards12, Kate Robson-Brown13, Philipp Schneider14, Heikki Suhonen10, Paul Tafforeau5, Katherine Williams14, & Ian J. Corfe8*. Affiliations: 10 1School of Physiology, Pharmacology & Neuroscience, University of Bristol, Bristol, UK. 2School of Earth Sciences, University of Bristol, Bristol, UK. 3Earth Science Department, The Natural History Museum, London, UK. 4Core Research Laboratories, The Natural History Museum, London, UK. 5European Synchrotron Radiation Facility, Grenoble, France. 15 6School of Biological Sciences, University of Southampton, Southampton, UK. 7Institute of Anatomy, University of Bern, Bern, Switzerland. 8Institute of Biotechnology, University of Helsinki, Helsinki, Finland. 9Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland. 10Department of Physics, University of Helsinki, Helsinki, Finland. 20 11Helmholtz-Zentrum Geesthacht, Zentrum für Material-und Küstenforschung GmbH Germany. 12Oxford University Museum of Natural History, Oxford, OX1 3PW, UK. 1 bioRxiv preprint doi: https://doi.org/10.1101/785360; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 13Department of Anthropology and Archaeology, University of Bristol, Bristol, UK. 14Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, UK. -
Museum Occurrence Data Predict Genetic Diversity in a Species-Rich Clade of Australian Lizards Supplementary Online Material
Museum occurrence data predict genetic diversity in a species-rich clade of Australian lizards Supplementary Online Material Sonal Singhal, Huateng Huang, Pascal O. Title, Stephen C. Donnellan, Iris Holmes, Daniel L. Rabosky March 9, 2017 Contents 1 Materials and Methods 2 1.1 Sampling . .2 1.2 Library Preparation and Sequencing . .2 1.3 Testing Methods for ddRAD data assembly . .2 1.4 Species Delimitation . .3 1.5 Measures of Genetic Diversity . .4 1.5.1 Generating Pseudo-reference Genomes . .4 1.5.2 Within-population p ......................................4 1.5.3 Species-wide p .........................................5 1.5.4 mtDNA p ............................................5 1.5.5 Calculating diversity . .5 1.6 Demographic Analyses . .5 1.6.1 Running ADMIXTURE . .5 1.6.2 Running ANGSD . .5 1.6.3 Running LAMARC . .6 1.7 Species Tree . .6 1.8 Collecting data on possible drivers of genetic diversity . .7 1.8.1 Proxies for census population size . .7 1.8.2 Environmental hetereogeneity . .9 1.8.3 Historical demography . .9 1.8.4 Possible confounders . .9 1.9 Model-Testing . 10 2 Figures and Tables 10 2.1 Tables . 10 2.2 Figures . 13 1 1 Materials and Methods 1.1 Sampling This study takes advantage of the numerous tissue samples accessioned in natural history museums across the United States and Australia. In this study, we sampled tissues from 8 museums: Australian Museum, Cornell University Museum of Vertebrates, Australian Biological Tissue Collection, Northern Territory Mu- seum, Queensland Museum, South Australian Museum, University of Michigan Museum of Zoology, and Western Australian Museum. Species boundaries in the genus Ctenotus have been subject to sufficient revi- sion (1), and, like many squamate species, many Ctenotus species contain multiple, cryptic species. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Ericaceae Root Associated Fungi Revealed by Culturing and Culture – Independent Molecular Methods
a Ericaceae root associated fungi revealed by culturing and culture – independent molecular methods. by Damian S. Bougoure BSc (Hons) Thesis submitted in accordance with the requirements for the degree of Doctor of Philosophy Centre for Horticulture and Plant Sciences University of Western Sydney February 2006 2 ACKNOWLEDGEMENTS Although I am credited with writing this thesis there is a multitude of people that have contributed to its completion in ways other than hitting the letters on a keyboard and I would like to thank them here. Firstly I’d like to thank my supervisor, Professor John Cairney, whose knowledge and guidance was invaluable in steering me along the PhD path. The timing of John’s ‘motivational chats’ was uncanny and his patience particularly, during the writing stage, seemed limitless at times. I’d also like to thank the Australian government for granting me an Australian Postgraduate Award (APA) scholarship, Paul Worden from Macquarie University and the staff from the Millennium Institute at Westmead Hospital for performing DNA sequencing and the National Parks and Wildlife Service of New South Wales and Environmental Protection agency of Queensland for permission to collect the Ericaceae plants. Thankyou to Mary Gandini from James Cook University for showing me the path to a Rhododendron lochiae population through the thick North Queenland rainforest. Without her help and I’d still be pointing the GPS at the sky. Thankyou to the other people in the lab studying mycorrhizas including Catherine Hitchcock, Susan Chambers, Adrienne Williams and particularly Brigitte Bastias with whom I shared an office. Everyone mentioned was generally just as willing as I was to talk about matters other than mycorrhizas. -
(Reptilia: Squamata: Scincidae) Species Group and a New Species of Immediate Conservation Concern in the Southwestern Australian Biodiversity Hotspot
Zootaxa 3390: 1–18 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) Molecular phylogeny and morphological revision of the Ctenotus labillardieri (Reptilia: Squamata: Scincidae) species group and a new species of immediate conservation concern in the southwestern Australian biodiversity hotspot GEOFFREY M. KAY & J. SCOTT KEOGH 1 Division of Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia 1 Corresponding author. E-mail: [email protected] Abstract Ctenotus is the largest and most diverse genus of skinks in Australia with at least 97 described species. We generated large mitochondrial and nuclear DNA data sets for 70 individuals representing all available species in the C. labillardieri species- group to produce the first comprehensive phylogeny for this clade. The widespread C. labillardieri was sampled extensively to provide the first detailed phylogeographic data set for a reptile in the southwestern Australian biodiversity hotspot. We supplemented our molecular data with a comprehensive morphological dataset for the entire group, and together these data are used to revise the group and describe a new species. The morphologically highly variable species C. labillardieri comprises seven well-supported genetic clades that each occupy distinct geographic regions. The phylogeographic patterns observed in this taxon are consistent with studies of frogs, plants and invertebrates, adding strength to emerging biogeographic hypotheses in this iconic region. The species C. catenifer, C. youngsoni, and C. gemmula are well supported, and despite limited sampling both C. catenifer and C. gemmula show substantial genetic structure. -
No Evidence for the 'Rate-Of-Living' Theory Across the Tetrapod Tree of Life
Received: 23 June 2019 | Revised: 30 December 2019 | Accepted: 7 January 2020 DOI: 10.1111/geb.13069 RESEARCH PAPER No evidence for the ‘rate-of-living’ theory across the tetrapod tree of life Gavin Stark1 | Daniel Pincheira-Donoso2 | Shai Meiri1,3 1School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel Abstract 2School of Biological Sciences, Queen’s Aim: The ‘rate-of-living’ theory predicts that life expectancy is a negative function of University Belfast, Belfast, United Kingdom the rates at which organisms metabolize. According to this theory, factors that accel- 3The Steinhardt Museum of Natural History, Tel Aviv University, Tel Aviv, Israel erate metabolic rates, such as high body temperature and active foraging, lead to organismic ‘wear-out’. This process reduces life span through an accumulation of bio- Correspondence Gavin Stark, School of Zoology, Faculty of chemical errors and the build-up of toxic metabolic by-products. Although the rate- Life Sciences, Tel Aviv University, Tel Aviv, of-living theory is a keystone underlying our understanding of life-history trade-offs, 6997801, Israel. Email: [email protected] its validity has been recently questioned. The rate-of-living theory has never been tested on a global scale in a phylogenetic framework, or across both endotherms and Editor: Richard Field ectotherms. Here, we test several of its fundamental predictions across the tetrapod tree of life. Location: Global. Time period: Present. Major taxa studied: Land vertebrates. Methods: Using a dataset spanning the life span data of 4,100 land vertebrate spe- cies (2,214 endotherms, 1,886 ectotherms), we performed the most comprehensive test to date of the fundamental predictions underlying the rate-of-living theory. -
Volume 5 Pt 3
Conservation Science W. Aust. 7 (1) : 105–120 (2008) Flora and vegetation of banded iron formations of the Yilgarn Craton: Mount Gibson and surrounding area RACHEL MEISSNER AND YVETTE CARUSO Science Division, Department of Environment and Conservation, PO Box 51, Wanneroo, Western Australia, 6946. Email: [email protected] ABSTRACT A total of 243 taxa, 233 native and 10 weeds, were recorded from study of the flora and plant communities of the Mount Gibson Range and surrounding ironstone ranges on the Ninghan pastoral lease, 60 km southeast of Paynes Find. Seven priority flora, one declared rare flora and one new species were identified during the study. Fifty quadrats were established to cover the geomorphology, floristic variation and geographical variation across the ranges. Data from these quadrats were used to define seven community types. Geography and landscape morphology separated the communities, with four communities found only on the Mount Gibson Range. Of these four, two had restricted distributions within the range. None of the ranges are currently reserved in the conservation estate. INTRODUCTION geology of the Mount Gibson area is complex and composed of several fold belts. The Retaliation Belt is Banded Iron Formation (BIF) ranges within the Yilgarn represented mainly by the Mount Gibson Range and is Craton are highly prospective for iron ore exploration and comprised of banded iron formations and cherts in the mining. Previous studies on ironstone and greenstone lower sedimentary association, bounded by volcanic flows ranges in the Goldfields have found high plant endemicity with marker bands of banded ironstone formation. The and restricted plant communities and it is thought that Yandhanoo Hills and small hills near Warro Well (Figure these patterns may also be found on the ranges in the 1) are part of the Yandhanoo Belt. -
A Taxonomic Revision of Prostanthera Labill. Section Klanderia (F.V. Muell.) Benth. (Labiatae)
Éfi1Ð A TAXONOMIC REVISION OF PRQITANTHERÀ Labill. SECTION KLANDERTA (F.v. Muel-l-. ) Benth. ( LABIATAE ) by Barry John Conn, iul.Sc., B.Sc.Ed. (MELB. ) Department of Botany, University of Adelaide Thesls presentèd for the Degree of Doctbr of Phllosophy at the University of Adelaide June, 1982 TABLE OF CONTENTS Ab-stract iv Decl.aration of OriginalitY vi Acknowl-edgements vii Introduction 1 Taxonomic HistorY 5 Methods, Materials and Presentation 8 Di-scussion of Select.ed Morphological Characters 11 Habit 11 Indumentum 12 Leaves i3 Infforescence 14 Prophylls 20 CaJ-yx 20 Coroll-a 21 Androecium 22 .l Disc and GYnoecium 24 !, Fruits and Seeds - 25 Pollinâti-on and Fl-oral- Biology Introduction 26 Field Observations 26 Pollinatlon mechanism i-n section Klanderia 27 Pollinat,ion mechanism in section Prostanthera 28 Fl-oral biology and ornithophily in section Klandenia 28 Breeding system in section Klanderia 31 i Seed Dispersal- and SeedÌing Establishment 33 Numerical Analysis Introduction 34 Sel-ection of Morphological Characters 36 Pre-numerical analYsis 37 Method used to seLect morphological- characters 38 Evaluation of character set 44 ' Numerical analyses of sPecimens 52 Numerical- anal-ysis of Prostanthera aspalathoides 66 Numerical- analysis of the Prostanthera P. mi-crophy l-]a-P. serpv]lifol-ia complex 70 Numerlcal analysis of the Prostanthera laricoides complex 76 Geographic Variation 83 Môrphological variati-on i-n Prostanthera aspalathoides 85 Morphologic al- variation in the Prostanthera P. microphvlla-P. serpyllifolia complex -
The Biological Invasion Risk from Vertebrate Species in Zoos ⇑ Phillip Cassey A, , Carolyn J
Biological Conservation 181 (2015) 18–26 Contents lists available at ScienceDirect Biological Conservation journal homepage: www.elsevier.com/locate/biocon Escaping captivity: The biological invasion risk from vertebrate species in zoos ⇑ Phillip Cassey a, , Carolyn J. Hogg b a School of Earth & Environmental Sciences, University of Adelaide, SA 5005, Australia b Zoo and Aquarium Association Australasia, Mosman, NSW 2088, Australia article info abstract Article history: Worldwide, invasive alien species increasingly contribute to environmental change and are a massive Received 6 August 2014 drain on social and economic resources. In Australia, the detection of new vertebrate incursions (i.e., alien Received in revised form 17 October 2014 species not currently established) has increased over the last decade. In other parts of the world, zoos Accepted 21 October 2014 have been identified as one of the influential pathways for the establishment of alien vertebrate species. We quantified the number of vertebrate species released (escaped and stolen) from Australian zoos between 1870 and 2010. The majority of reported releases (185 out of 230) have occurred since 1985. Keywords: Most of the species (77.9%), which have escaped, or been stolen, from Australian zoos have only ever been Biological invasions released once. In sum, escapes were much more common (89%) than thefts. Compared to the other three Biosecurity Risk assessment vertebrate classes (amphibians, birds, mammals) reptiles experienced a significantly greater proportion Vertebrate pests of thefts than expected by chance. Almost half of all escapes (46%) were bird species. Birds also had Zoological parks the lowest retrieval rate, and therefore posed the greatest potential risk to establishment and subsequent invasion. -
Lancelin Island Skink Recovery Plan
LANCELIN ISLAND SKINK RECOVERY PLAN by David Pearson and Barbara Jones for the Lancelin Island Skink Recovery Team 2000 Department of Conservation and Land Management Wildlife Management Program No 22 WESTERN AUSTRALIAN WILDLIFE MANAGEMENT PROGRAM No. 22 LANCELIN ISLAND SKINK RECOVERY PLAN by David Pearson1 and Barbara Jones2 for the Lancelin Island Skink Recovery Team 1 Department of Conservation and Land Management Western Australian Wildlife Research Centre PO Box 51 Wanneroo WA 6946 2 4 Rome Road, Melville WA 6156 2000 Department of Conservation and Land Management Locked Bag 104 Bentley Delivery Centre WA 6983 ii ISSN 0816-9713 Cover illustration: Ctenotus lancelini by Jane McRae The Department of Conservation and Land Management's Recovery Plans are edited by the Western Australian Threatened Species & Communities Unit PO Box 51 Wanneroo, Western Australia 6946 Telephone: (08) 94055 128 Fax: (08) 9306 1066 Preparation by: Jill Pryde 2000 iii FOREWORD The Western Australian Department of Conservation and Land Management (CALM) publishes Wildlife Management Programs to provide detailed information and management actions for the conservation of threatened or exploited species of flora and fauna. Recovery Plans delineate, justify and schedule management actions necessary to support the recovery of threatened species and ecological communities. The attainment of objectives and the provision of funds is subject to budgetary and other constraints affecting the parties involved, as well as the need to address other priorities. Recovery Plans do not necessarily represent the views nor the official positions of any individuals or agencies represented on the Recovery Team. This Recovery Plan has been approved by the Executive Director, Department of Conservation and Land Management, the National Parks and Nature Conservation Authority and the Minister for the Environment. -
Flora and Vegetation: Markey and Dillon 2008
Conservation Science W. Aust. 7 (1) : 121–149 (2008) Flora and vegetation of the banded iron formations of the Yilgarn Craton: the central Tallering Land System ADRIENNE S. MARKEY AND STEVEN J. DILLON Science Division, Department of Environment and Conservation, Wildlife Research Centre, PO Box 51, Wanneroo WA 6946 Email: [email protected] ABSTRACT A quadrat-based survey was undertaken on the flora and floristic communities of several ironstone ranges and outcrops in the Yalgoo bioregion, covering the central extent of the Tallering Land System. One hundred and three 20 x 20 m quadrats were established over the extent of this region, and covered the topographic profile of these landforms. A total of 414 taxa (species, subspecies, varieties and forms) and four hybrids were identified from these quadrats. Fifteen taxa of conservation significance were found in this survey, five of which had not been previously recorded from the area. Significant range extensions for 21 species are reported in this study. At least nine new taxa were identified, of which several are of conservation significance. Nine regional endemic and near-endemic taxa were found over the study area, with half restricted to the south-west hills. Eight floristic community types (five main types, two with subtypes) were resolved from classification analysis of floristic data (presence / absence). These community types were strongly associated with topography and soil chemistry. Geographical variation was found among the floristic communities within the region, and some communities were found to be restricted to the south-west of the survey area. These restricted communities were found to occur in the more mesic regions of the survey area, on rocky uplands of BIF, and had notable component of flora from the South West Floristic Region. -
Pollen Morphology and Its Systematic Significance in the Ericaceae
Title Pollen Morphology and Its Systematic Significance in the Ericaceae Author(s) Sawara, A.K.M. Golam Citation 北海道大学. 博士(農学) 甲第8187号 Issue Date 2007-03-23 DOI 10.14943/doctoral.k8187 Doc URL http://hdl.handle.net/2115/46925 Type theses (doctoral) File Information sarwar.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Pollen Morphology and Its Systematic Significance in the Ericaceae (ツツジ科植物の花粉形態とその体系学的意義) A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy By Sarwar, A.K.M. Golam Division of Bioresources and Product Science Graduate School of Agriculture Hokkaido University Sapporo, Japan March, 2007 Contents Abstract iv Chapter 1: GENERAL INTRODUCTION 1 Chapter 2: MATERIALS AND METHODS 10 Chapter 3: POLLEN MORPHOLOGY AND ITS SYSTEMATIC SIGNIFICANCE 20 GENERAL POLLEN MORPHOLOGY OF THE ERICACEAE 20 3-1 SUBFAMILY ENKIANTHOIDEAE 24 Introduction 24 Results 25 Discussion 30 3-2 SUBFAMILY ARBUTOIDEAE 44 Introduction 44 Results 45 Discussion 51 3-3 SUBFAMILY ERICOIDEAE 60 Introduction 60 Results 61 Discussion 81 3-4 SUBFAMILY CASSIOPOIDEAE 106 Introduction 106 Results 107 Discussion 110 ii 3-5 SUBFAMILY HARRIMANELLOIDEAE 112 Introduction 112 Results 113 Discussion 113 3-6 SUBFAMILY VACCINIOIDEAE 118 Introduction 118 Results 119 Discussion 160 Chapter 4: GENERAL DISCUSSION 203 Acknowledgements 252 Summary 254 References 259 Appendix I: Different classification systems of Ericaceae 281 Appendix II: Specimens examined 287 iii Abstract A detailed description of the range of pollen morphological variation within the family Ericaceae sensu Kron et al. (2002a) has been presented. For this palynological investigation, 275 taxa of 270 species representing 57 genera and 6 subfamilies were studied with light (LM) and scanning electron microscopy (SEM), and 31 species with transmission electron microscopy (TEM).