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Crystal Structures
Crystal Structures Academic Resource Center Crystallinity: Repeating or periodic array over large atomic distances. 3-D pattern in which each atom is bonded to its nearest neighbors Crystal structure: the manner in which atoms, ions, or molecules are spatially arranged. Unit cell: small repeating entity of the atomic structure. The basic building block of the crystal structure. It defines the entire crystal structure with the atom positions within. Lattice: 3D array of points coinciding with atom positions (center of spheres) Metallic Crystal Structures FCC (face centered cubic): Atoms are arranged at the corners and center of each cube face of the cell. FCC continued Close packed Plane: On each face of the cube Atoms are assumed to touch along face diagonals. 4 atoms in one unit cell. a 2R 2 BCC: Body Centered Cubic • Atoms are arranged at the corners of the cube with another atom at the cube center. BCC continued • Close Packed Plane cuts the unit cube in half diagonally • 2 atoms in one unit cell 4R a 3 Hexagonal Close Packed (HCP) • Cell of an HCP lattice is visualized as a top and bottom plane of 7 atoms, forming a regular hexagon around a central atom. In between these planes is a half- hexagon of 3 atoms. • There are two lattice parameters in HCP, a and c, representing the basal and height parameters Volume respectively. 6 atoms per unit cell Coordination number – the number of nearest neighbor atoms or ions surrounding an atom or ion. For FCC and HCP systems, the coordination number is 12. For BCC it’s 8. -
361: Crystallography and Diffraction
361: Crystallography and Diffraction Michael Bedzyk Department of Materials Science and Engineering Northwestern University February 2, 2021 Contents 1 Catalog Description3 2 Course Outcomes3 3 361: Crystallography and Diffraction3 4 Symmetry of Crystals4 4.1 Types of Symmetry.......................... 4 4.2 Projections of Symmetry Elements and Point Groups...... 9 4.3 Translational Symmetry ....................... 17 5 Crystal Lattices 18 5.1 Indexing within a crystal lattice................... 18 5.2 Lattices................................. 22 6 Stereographic Projections 31 6.1 Projection plane............................ 33 6.2 Point of projection........................... 33 6.3 Representing Atomic Planes with Vectors............. 36 6.4 Concept of Reciprocal Lattice .................... 38 6.5 Reciprocal Lattice Vector....................... 41 7 Representative Crystal Structures 48 7.1 Crystal Structure Examples ..................... 48 7.2 The hexagonal close packed structure, unlike the examples in Figures 7.1 and 7.2, has two atoms per lattice point. These two atoms are considered to be the motif, or repeating object within the HCP lattice. ............................ 49 1 7.3 Voids in FCC.............................. 54 7.4 Atom Sizes and Coordination.................... 54 8 Introduction to Diffraction 57 8.1 X-ray .................................. 57 8.2 Interference .............................. 57 8.3 X-ray Diffraction History ...................... 59 8.4 How does X-ray diffraction work? ................. 59 8.5 Absent -
Crystal Structure of a Material Is Way in Which Atoms, Ions, Molecules Are Spatially Arranged in 3-D Space
Crystalline Structures – The Basics •Crystal structure of a material is way in which atoms, ions, molecules are spatially arranged in 3-D space. •Crystal structure = lattice (unit cell geometry) + basis (atom, ion, or molecule positions placed on lattice points within the unit cell). •A lattice is used in context when describing crystalline structures, means a 3-D array of points in space. Every lattice point must have identical surroundings. •Unit cell: smallest repetitive volume •Each crystal structure is built by stacking which contains the complete lattice unit cells and placing objects (motifs, pattern of a crystal. A unit cell is chosen basis) on the lattice points: to represent the highest level of geometric symmetry of the crystal structure. It’s the basic structural unit or building block of crystal structure. 7 crystal systems in 3-D 14 crystal lattices in 3-D a, b, and c are the lattice constants 1 a, b, g are the interaxial angles Metallic Crystal Structures (the simplest) •Recall, that a) coulombic attraction between delocalized valence electrons and positively charged cores is isotropic (non-directional), b) typically, only one element is present, so all atomic radii are the same, c) nearest neighbor distances tend to be small, and d) electron cloud shields cores from each other. •For these reasons, metallic bonding leads to close packed, dense crystal structures that maximize space filling and coordination number (number of nearest neighbors). •Most elemental metals crystallize in the FCC (face-centered cubic), BCC (body-centered cubic, or HCP (hexagonal close packed) structures: Room temperature crystal structure Crystal structure just before it melts 2 Recall: Simple Cubic (SC) Structure • Rare due to low packing density (only a-Po has this structure) • Close-packed directions are cube edges. -
Tetrahedral Coordination with Lone Pairs
TETRAHEDRAL COORDINATION WITH LONE PAIRS In the examples we have discussed so far, the shape of the molecule is defined by the coordination geometry; thus the carbon in methane is tetrahedrally coordinated, and there is a hydrogen at each corner of the tetrahedron, so the molecular shape is also tetrahedral. It is common practice to represent bonding patterns by "generic" formulas such as AX4, AX2E2, etc., in which "X" stands for bonding pairs and "E" denotes lone pairs. (This convention is known as the "AXE method") The bonding geometry will not be tetrahedral when the valence shell of the central atom contains nonbonding electrons, however. The reason is that the nonbonding electrons are also in orbitals that occupy space and repel the other orbitals. This means that in figuring the coordination number around the central atom, we must count both the bonded atoms and the nonbonding pairs. The water molecule: AX2E2 In the water molecule, the central atom is O, and the Lewis electron dot formula predicts that there will be two pairs of nonbonding electrons. The oxygen atom will therefore be tetrahedrally coordinated, meaning that it sits at the center of the tetrahedron as shown below. Two of the coordination positions are occupied by the shared electron-pairs that constitute the O–H bonds, and the other two by the non-bonding pairs. Thus although the oxygen atom is tetrahedrally coordinated, the bonding geometry (shape) of the H2O molecule is described as bent. There is an important difference between bonding and non-bonding electron orbitals. Because a nonbonding orbital has no atomic nucleus at its far end to draw the electron cloud toward it, the charge in such an orbital will be concentrated closer to the central atom. -
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I`mt`qx1/00Lhmdq`knesgdLnmsg9Rbnkdbhsd This month’s mineral, scolecite, is an uncommon zeolite from India. Our write-up explains its origin as a secondary mineral in volcanic host rocks, the difficulty of collecting this fragile mineral, the unusual properties of the zeolite-group minerals, and why mineralogists recently revised the system of zeolite classification and nomenclature. OVERVIEW PHYSICAL PROPERTIES Chemistry: Ca(Al2Si3O10)A3H2O Hydrous Calcium Aluminum Silicate (Hydrous Calcium Aluminosilicate), usually containing some potassium and sodium. Class: Silicates Subclass: Tectosilicates Group: Zeolites Crystal System: Monoclinic Crystal Habits: Usually as radiating sprays or clusters of thin, acicular crystals or Hairlike fibers; crystals are often flattened with tetragonal cross sections, lengthwise striations, and slanted terminations; also massive and fibrous. Twinning common. Color: Usually colorless, white, gray; rarely brown, pink, or yellow. Luster: Vitreous to silky Transparency: Transparent to translucent Streak: White Cleavage: Perfect in one direction Fracture: Uneven, brittle Hardness: 5.0-5.5 Specific Gravity: 2.16-2.40 (average 2.25) Figure 1. Scolecite. Luminescence: Often fluoresces yellow or brown in ultraviolet light. Refractive Index: 1.507-1.521 Distinctive Features and Tests: Best field-identification marks are acicular crystal habit; vitreous-to-silky luster; very low density; and association with other zeolite-group minerals, especially the closely- related minerals natrolite [Na2(Al2Si3O10)A2H2O] and mesolite [Na2Ca2(Al6Si9O30)A8H2O]. Laboratory tests are often needed to distinguish scolecite from other zeolite minerals. Dana Classification Number: 77.1.5.5 NAME The name “scolecite,” pronounced SKO-leh-site, is derived from the German Skolezit, which comes from the Greek sklx, meaning “worm,” an allusion to the tendency of its acicular crystals to curl when heated and dehydrated. -
Types of Lattices
Types of Lattices Types of Lattices Lattices are either: 1. Primitive (or Simple): one lattice point per unit cell. 2. Non-primitive, (or Multiple) e.g. double, triple, etc.: more than one lattice point per unit cell. Double r2 cell r1 r2 Triple r1 cell r2 r1 Primitive cell N + e 4 Ne = number of lattice points on cell edges (shared by 4 cells) •When repeated by successive translations e =edge reproduce periodic pattern. •Multiple cells are usually selected to make obvious the higher symmetry (usually rotational symmetry) that is possessed by the 1 lattice, which may not be immediately evident from primitive cell. Lattice Points- Review 2 Arrangement of Lattice Points 3 Arrangement of Lattice Points (continued) •These are known as the basis vectors, which we will come back to. •These are not translation vectors (R) since they have non- integer values. The complexity of the system depends upon the symmetry requirements (is it lost or maintained?) by applying the symmetry operations (rotation, reflection, inversion and translation). 4 The Five 2-D Bravais Lattices •From the previous definitions of the four 2-D and seven 3-D crystal systems, we know that there are four and seven primitive unit cells (with 1 lattice point/unit cell), respectively. •We can then ask: can we add additional lattice points to the primitive lattices (or nets), in such a way that we still have a lattice (net) belonging to the same crystal system (with symmetry requirements)? •First illustrate this for 2-D nets, where we know that the surroundings of each lattice point must be identical. -
Oxide Crystal Structures: the Basics
Oxide crystal structures: The basics Ram Seshadri Materials Department and Department of Chemistry & Biochemistry Materials Research Laboratory, University of California, Santa Barbara CA 93106 USA [email protected] Originally created for the: ICMR mini-School at UCSB: Computational tools for functional oxide materials – An introduction for experimentalists This lecture 1. Brief description of oxide crystal structures (simple and complex) a. Ionic radii and Pauling’s rules b. Electrostatic valence c. Bond valence, and bond valence sums Why do certain combinations of atoms take on specific structures? My bookshelf H. D. Megaw O. Muller & R. Roy I. D. Brown B. G. Hyde & S. Andersson Software: ICSD + VESTA K. Momma and F. Izumi, VESTA 3 for three-dimensional visualization of crystal, volumetric and morphology data, J. Appl. Cryst. 44 (2011) 1272–1276. [doi:10.1107/S0021889811038970] Crystal structures of simple oxides [containing a single cation site] Crystal structures of simple oxides [containing a single cation site] N.B.: CoO is simple, Co3O4 is not. ZnCo2O4 is certainly not ! Co3O4 and ZnCo2O4 are complex oxides. Graphs of connectivity in crystals: Atoms are nodes and edges (the lines that connect nodes) indicate short (near-neighbor) distances. CO2: The molecular structure is O=C=O. The graph is: Each C connected to 2 O, each O connected to a 1 C OsO4: The structure comprises isolated tetrahedra (molecular). The graph is below: Each Os connected to 4 O and each O to 1 Os Crystal structures of simple oxides of monovalent ions: A2O Cu2O Linear coordination is unusual. Found usually in Cu+ and Ag+. -
Inorganic Chemistry
Inorganic Chemistry Chemistry 120 Fall 2005 Prof. Seth Cohen Some Important Features of Metal Ions Electronic configuration • Oxidation State/Charge. •Size. • Coordination number. • Coordination geometry. • “Soft vs. Hard”. • Lability. • Electrochemistry. • Ligand environment. 1 Oxidation State/Charge • The oxidation state describes the charge on the metal center and number of valence electrons • Group - Oxidation Number = d electron count 3 4 5 6 7 8 9 10 11 12 Size • Size of the metal ions follows periodic trends. • Higher positive charge generally means a smaller ion. • Higher on the periodic table means a smaller ion. • Ions of the same charge decrease in radius going across a row, e.g. Ca2+>Mn2+>Zn2+. • Of course, ion size will effect coordination number. 2 Coordination Number • Coordination Number = the number of donor atoms bound to the metal center. • The coordination number may or may not be equal to the number of ligands bound to the metal. • Different metal ions, depending on oxidation state prefer different coordination numbers. • Ligand size and electronic structure can also effect coordination number. Common Coordination Numbers • Low coordination numbers (n =2,3) are fairly rare, in biological systems a few examples are Cu(I) metallochaperones and Hg(II) metalloregulatory proteins. • Four-coordinate is fairly common in complexes of Cu(I/II), Zn(II), Co(II), as well as in biologically less relevant metal ions such as Pd(II) and Pt(II). • Five-coordinate is also fairly common, particularly for Fe(II). • Six-coordinate is the most common and important coordination number for most transition metal ions. • Higher coordination numbers are found in some 2nd and 3rd row transition metals, larger alkali metals, and lanthanides and actinides. -
Chap 1 Crystal Structure
Introduction Example of crystal structure Miller index Chap 1 Crystal structure Dept of Phys M.C. Chang Introduction Example of crystal structure Miller index Bulk structure of matter Crystalline solid Non-crystalline solid Quasi-crystal (1982 ) (amorphous, glass) Ordered, but not periodic 2011 Shechtman www.examplesof.net/2017/08/example-of-solids-crystalline-solids-amorphous-solids.html#.XRHQxuszaJA nmi3.eu/news-and-media/the-contribution-of-neutrons-to-the-study-of-quasicrystals.html Introduction Example of crystal structure Miller index • A simple lattice (in 3D) = a set of points with positions at r = n1a1+n2a2+n3a3 (n1, n2, n3 cover all integers ), a1, a 2, and a3 are called primitive vectors (原始向量), and a1, a 2, and a3 are called lattice constants ( 晶格常數). Alternative definition: • A simple lattice = a set of points in which every point has exactly the same environment. Note: A simple lattice is often called a Bravais lattice . From now on we’ll use the latter term ( not used by Kittel). Introduction Example of crystal structure Miller index Decomposition: Crystal structure = Bravais lattice + basis (of atoms) (How to repeat) (What to repeat) scienceline.ucsb.edu/getkey.php?key=4630 lattice basis 基元 (one atom, or a group of atoms) • Every crystal has a corresponding Bravais lattice and a basis. Note: Lattice is a math term, while crystal is a physics term. 晶格 晶體 Introduction Example of crystal structure Miller index Bravais lattice non-Bravais lattice = Bravais + p-point basis (p>1) Triangular (or hexagonal) lattice Honeycomb lattice Primitive vectors a2 basis a1 Honeycomb lattice = triangular lattice + 2-point basis (i.e. -
Space Symmetry, Space Groups
Space symmetry, Space groups - Space groups are the product of possible combinations of symmetry operations including translations. - There exist 230 different space groups in 3-dimensional space - Comparing to point groups, space groups have 2 more symmetry operations (table 1). These operations include translations. Therefore they describe not only the lattice but also the crystal structure. Table 1: Additional symmetry operations in space symmetry, their description, symmetry elements and Hermann-Mauguin symbols. symmetry H-M description symmetry element operation symbol screw 1. rotation by 360°/N screw axis NM (Schraubung) 2. translation along the axis (Schraubenachse) 1. reflection across the plane glide glide plane 2. translation parallel to the a,b,c,n,d (Gleitspiegelung) (Gleitspiegelebene) glide plane Glide directions for the different gilde planes: a (b,c): translation along ½ a or ½ b or ½ c, respectively) (with ,, cba = vectors of the unit cell) n: translation e.g. along ½ (a + b) d: translation e.g. along ¼ (a + b), d from diamond, because this glide plane occurs in the diamond structure Screw axis example: 21 (N = 2, M = 1) 1) rotation by 180° (= 360°/2) 2) translation parallel to the axis by ½ unit (M/N) Only 21, (31, 32), (41, 43), 42, (61, 65) (62, 64), 63 screw axes exist in parenthesis: right, left hand screw axis Space group symbol: The space group symbol begins with a capital letter (P: primitive; A, B, C: base centred I, body centred R rhombohedral, F face centred), which represents the Bravais lattice type, followed by the short form of symmetry elements, as known from the point group symbols. -
Additive Effects of Alkali Metals on Cu-Modified Ch3nh3pbi3−Δclδ
RSC Advances PAPER View Article Online View Journal | View Issue Additive effects of alkali metals on Cu-modified CH3NH3PbI3ÀdCld photovoltaic devices† Cite this: RSC Adv.,2019,9,24231 Naoki Ueoka, Takeo Oku * and Atsushi Suzuki We investigated the addition of alkali metal elements (namely Na+,K+,Rb+, and Cs+) to Cu-modified CH3NH3PbI3ÀdCld photovoltaic devices and their effects on the photovoltaic properties and electronic structure. The open-circuit voltage was increased by CuBr2 addition to the CH3NH3PbI3ÀdCld precursor solution. The series resistance was decreased by simultaneous addition of CuBr2 and RbI, which increased the external quantum efficiencies in the range of 300–500 nm, and the short-circuit current density. The energy gap of the perovskite crystal increased through CuBr2 addition, which we also confirmed by first-principles calculations. Charge carrier generation was observed in the range of 300– Received 25th April 2019 500 nm as an increase of the external quantum efficiency, owing to the partial density of states Accepted 24th July 2019 contributed by alkali metal elements. Calculations suggested that the Gibbs energies were decreased by DOI: 10.1039/c9ra03068a incorporation of alkali metal elements into the perovskite crystals. The conversion efficiency was Creative Commons Attribution 3.0 Unported Licence. rsc.li/rsc-advances maintained for 7 weeks for devices with added CuBr2 and RbI. PbI2 +CH3NH3I + 2CH3NH3Cl / CH3NH3PbI3 Introduction + 2CH3NH3Cl (g)[ (140 C)(2) Studies of methylammonium lead halide perovskite solar x y / cells started in 2009, when a conversion efficiency of 3.9% PbI2 + CH3NH3I+ CH3NH3Cl (CH3NH3)x+yPbI2+xCly 1 / [ was reported. Some devices have since yielded conversion CH3NH3PbI3 +CH3NH3Cl (g) (140 C) (3) efficiencies of more than 20% as studies have expanded This article is licensed under a 2–5 Owing to the formation of intermediates and solvent evap- globally, with expectations for these perovskite solar cells 6–9 oration, perovskite grains are gradually formed by annealing. -
Apophyllite-(Kf)
December 2013 Mineral of the Month APOPHYLLITE-(KF) Apophyllite-(KF) is a complex mineral with the unusual tendency to “leaf apart” when heated. It is a favorite among collectors because of its extraordinary transparency, bright luster, well- developed crystal habits, and occurrence in composite specimens with various zeolite minerals. OVERVIEW PHYSICAL PROPERTIES Chemistry: KCa4Si8O20(F,OH)·8H20 Basic Hydrous Potassium Calcium Fluorosilicate (Basic Potassium Calcium Silicate Fluoride Hydrate), often containing some sodium and trace amounts of iron and nickel. Class: Silicates Subclass: Phyllosilicates (Sheet Silicates) Group: Apophyllite Crystal System: Tetragonal Crystal Habits: Usually well-formed, cube-like or tabular crystals with rectangular, longitudinally striated prisms, square cross sections, and steep, diamond-shaped, pyramidal termination faces; pseudo-cubic prisms usually have flat terminations with beveled, distinctly triangular corners; also granular, lamellar, and compact. Color: Usually colorless or white; sometimes pale shades of green; occasionally pale shades of yellow, red, blue, or violet. Luster: Vitreous to pearly on crystal faces, pearly on cleavage surfaces with occasional iridescence. Transparency: Transparent to translucent Streak: White Cleavage: Perfect in one direction Fracture: Uneven, brittle. Hardness: 4.5-5.0 Specific Gravity: 2.3-2.4 Luminescence: Often fluoresces pale yellow-green. Refractive Index: 1.535-1.537 Distinctive Features and Tests: Pseudo-cubic crystals with pearly luster on cleavage surfaces; longitudinal striations; and occurrence as a secondary mineral in association with various zeolite minerals. Laboratory analysis is necessary to differentiate apophyllite-(KF) from closely-related apophyllite-(KOH). Can be confused with such zeolite minerals as stilbite-Ca [hydrous calcium sodium potassium aluminum silicate, Ca0.5,K,Na)9(Al9Si27O72)·28H2O], which forms tabular, wheat-sheaf-like, monoclinic crystals.