Postsynaptic Proteome of Non-Demented Individuals with Alzheimer’S Disease Neuropathology

Total Page:16

File Type:pdf, Size:1020Kb

Postsynaptic Proteome of Non-Demented Individuals with Alzheimer’S Disease Neuropathology Journal of Alzheimer’s Disease 65 (2018) 659–682 659 DOI 10.3233/JAD-180179 IOS Press Postsynaptic Proteome of Non-Demented Individuals with Alzheimer’s Disease Neuropathology Olga Zolochevskaa,2, Nicole Bjorklunda,1,2, Randall Woltjerb, John E. Wiktorowiczc and Giulio Taglialatelaa,∗ aDepartment of Neurology, University of Texas Medical Branch, Galveston, TX, USA bDepartment of Pathology, Oregon Health and Science University, Portland, OR, USA cDepartment of Biochemistry and Molecular Biology, Sealy Center for Molecular Medicine, University of Texas Medical Branch, Galveston, TX, USA Handling Associate editor: Daniela Puzzo Accepted 5 July 2018 Abstract. Some individuals, here referred to as Non-Demented with Alzheimer’s Neuropathology (NDAN), retain their cognitive function despite the presence of amyloid plaques and tau tangles typical of symptomatic Alzheimer’s disease (AD). In NDAN, unlike AD, toxic amyloid-␤ oligomers do not localize to the postsynaptic densities (PSDs). Synaptic resistance to amyloid-␤ in NDAN may thus enable these individuals to remain cognitively intact despite the AD-like pathology. The mechanism(s) responsible for this resistance remains unresolved and understanding such protective biological processes could reveal novel targets for the development of effective treatments for AD. The present study uses a proteomic approach to compare the hippocampal postsynaptic densities of NDAN, AD, and healthy age-matched persons to identify protein signatures characteristic for these groups. Subcellular fractionation followed by 2D gel electrophoresis and mass spectrometry were used to analyze the PSDs. We describe fifteen proteins which comprise the unique proteomic signature of NDAN PSDs, thus setting them apart from control subjects and AD patients. Keywords: Alzheimer’s disease, non-demented with AD-like pathology, postsynaptic density proteome, synapse INTRODUCTION history/genetics (apolipoprotein ε, APOE; amyloid- ␤ precursor protein, A␤PP; presenilin, PSEN1 and Alzheimer’s disease (AD) is the most common PSEN2), brain injury, cardiovascular health, physical form of dementia, affecting more than 5 million activity, and social interactions among others [2–4]. Americans [1]. Old age is the greatest risk factor for While available therapies have limited efficacy and AD, which thus affects over one third of people older only temporarily mitigate cognitive decline, currently than 85 years of age. Other risk factors include family there are no disease-modifying treatments for AD. Typical AD pathology is characterized by two 1Present address: Department of Medicine, Albert Einstein main neurodegenerative processes: amyloidogenesis College of Medicine, Bronx, NY, USA and neurofibrillary degeneration [5]. Amyloidogen- 2These authors contributed equally to this work. ␤ ∗ esis leads to deposition of extracellular amyloid- Correspondence to: Giulio Taglialatela, Department of Neu- ␤ rology, University of Texas Medical Branch, 301 University Blvd., (A ) peptide, while neurofibrillary tangles (NFTs) Galveston, TX 77555-1045, USA. Tel.: +1 409 772 1679; E-mail: contain hyperphosphorylated tau protein. However, [email protected]. there is no correlation between presence of mature ISSN 1387-2877/18/$35.00 © 2018 – IOS Press and the authors. All rights reserved This article is published online with Open Access and distributed under the terms of the Creative Commons Attribution Non-Commercial License (CC BY-NC 4.0). 660 O. Zolochevska et al. / Proteome of AD Resistant Synapses A␤ deposits and NFTs with the cell loss or cog- at the PSDs of NDAN subjects that specifically mark nitive decline [6–10]. On the other hand, presence the ability of their PSDs in the hippocampus to reject of soluble oligomeric species of A␤ and tau in binding of toxic A␤ oligomers. To test our hypothesis, the brain correlates with cognitive dysfunction [7, in the present work we performed proteomic analy- 11–13]. Early oligomers, the most toxic forms of sis of the PSDs isolated from healthy control, AD, misfolded A␤ and tau forming during the aggre- and NDAN individuals. The protein levels in AD and gation process, can accumulate at the synapse and NDAN were compared to control, in addition to direct synergistically impair dendritic spines in the hip- NDAN versus AD comparison. As a result, we identi- pocampus [7, 14–19]. Microscopic changes in the fied a unique PSD protein signature of NDAN which brain begin long before memory loss [20]. Synapse consists of fifteen proteins, setting them apart from loss is believed to occur at early stages of the dis- control and AD. ease [20, 21], while cell death occurs at later stages and contributes to ultimate cognitive decline [20]. METHODS AD has a long asymptomatic stage and with the development of improved neuroimaging techniques Case subjects it has become evident that some individuals with AD-like neuropathology do not exhibit any cognitive Frozen mid-hippocampus tissue was obtained from decline during their lifetime ([8, 20, 22]; reviewed by the Oregon Brain Bank at Oregon Health and Sci- [23]). Such individuals can be described as “asymp- ence University (OHSU) in Portland, OR. Donor tomatic at risk for AD dementia”, or “not normal, subjects were enrolled and clinically evaluated in not MCI (mild cognitive impairment)” [22]. We refer studies at the NIH-sponsored Layton Aging and to this cohort of individuals as Non-Demented with AD Center (ADC) at OHSU. Subjects were par- Alzheimer’s Neuropathology (NDAN) [24]. Several ticipants in brain aging studies at the ADC and research groups, including ours, are trying to under- received annual neurological and neuropsycholog- stand the mechanisms involved in preservation of ical evaluations, with a Clinical Dementia Rating cognition in NDAN, with the goal of identifying treat- (CDR) assigned by an experienced clinician. Con- ment targets to develop novel therapeutic concepts trols and NDAN had normal cognitive and functional based on intrinsic resistance to AD [6, 8, 22, 24–30]. examinations with CDR <1. The AD subjects were Synaptic dysfunction in AD is observed as a result diagnosed by a clinical team consensus confer- of A␤ oligomers association with the postsynap- ence, met the National Institute for Neurological and tic density (PSD) [16]. At the PSD, A␤ oligomers Communicative Disorders and Stroke-Alzheimer’s oppose expression of long-term potentiation (LTP), Disease and Related Disorder Association diagnos- modify protein content, and induce dendritic spine tic criteria for clinical AD, had a CDR of greater shrinkage and eventually loss [16, 31, 32]. Since the than 1.0 and neuropathologic confirmation at autopsy size of the PSD is proportional to the strength of (after informed consent). Tissue use conformed the synapse, A␤-driven synapse damage can result to institutional review board-approved protocols. in the loss of cognitive function. In AD, plasticity Neuropathologic assessment conformed to National and cognition are affected through the perturbation Institute on Aging-Reagan consensus criteria. All of Ca2+ /calmodulin-dependent protein kinase II-␣ brain tissue was examined by a neuropathologist (CaMKII) autophosphorylation [32]. Association of for neurodegenerative pathology including NFTs and A␤ oligomers with the PSD implicates dephospho- neuritic plaques. Using standardized CERAD criteria rylation (deactivation) of CREB (cAMP response [34], cases were assigned an amyloid score based on element-binding protein factor), which in turn affects the deposition of amyloid plaques in the brain (0 = no transcription of genes regulating long-term changes plaques, 1 = sparse plaques, 2 = moderate plaques and in synaptic strength [33]. 3 = dense plaques) and a Braak stage (0–6; with 6 We have previously reported that NDAN synapses being the most severe) indicative of the level and reject A␤ oligomers, which could explain why location of hyperphosphorylated tau tangles [35]. NDAN subjects remain cognitively intact. Our lab- In addition to the pathological information detailed oratory has demonstrated for the first time that the above, demographical data were received along with PSD of NDAN subjects is free of A␤ oligomers [24]. the frozen tissue. These included age, sex, and MMSE Based on this observation, we hypothesized that there score [34] for each case. Several AD patients pre- might be unique changes in protein expression levels sented with relatively high MMSE scores, which is O. Zolochevska et al. / Proteome of AD Resistant Synapses 661 attributable to multiple factors: 1) the last MMSE was Synaptic junctions were obtained by incubating the collected several months prior to death, 2) the diag- synaptosomes in pH = 6 buffer (as described above) nosis is mainly based on consensus CDR assessments and then centrifuging at 40,000 × g for 30 min at and several tests beyond MMSE, 3) even milder 4◦C. The supernatant (containing synaptic vesicles) impairments sometimes led to the diagnosis of AD and the pellet were collected separately. The pellet with the understanding that this was earlier-stage dis- was solubilized and incubated in pH = 8 buffer (as ease. When these scores are looked at as a whole, it described above) and then centrifuged at 40,000 × g can be appreciated that these patients do tend to be for 30 min at 4◦C to generate the PSD pellet. This in earlier stages of dementia, both in terms of their pellet was solubilized in 1% SDS. clinical ratings and in terms of their pathologies, with intermediate (3–4) versus high (5–6) Braak scores. Proteomics
Recommended publications
  • ENSG Gene Encodes Effector TCR Pathway Costimulation Inhibitory/Exhaustion Synapse/Adhesion Chemokines/Receptors
    ENSG Gene Encodes Effector TCR pathway Costimulation Inhibitory/exhaustion Synapse/adhesion Chemokines/receptors ENSG00000111537 IFNG IFNg x ENSG00000109471 IL2 IL-2 x ENSG00000232810 TNF TNFa x ENSG00000271503 CCL5 CCL5 x x ENSG00000139187 KLRG1 Klrg1 x ENSG00000117560 FASLG Fas ligand x ENSG00000121858 TNFSF10 TRAIL x ENSG00000134545 KLRC1 Klrc1 / NKG2A x ENSG00000213809 KLRK1 Klrk1 / NKG2D x ENSG00000188389 PDCD1 PD-1 x x ENSG00000117281 CD160 CD160 x x ENSG00000134460 IL2RA IL-2 receptor x subunit alpha ENSG00000110324 IL10RA IL-10 receptor x subunit alpha ENSG00000115604 IL18R1 IL-18 receptor 1 x ENSG00000115607 IL18RAP IL-18 receptor x accessory protein ENSG00000081985 IL12RB2 IL-12 receptor x beta 2 ENSG00000186810 CXCR3 CXCR3 x x ENSG00000005844 ITGAL CD11a x ENSG00000160255 ITGB2 CD18; Integrin x x beta-2 ENSG00000156886 ITGAD CD11d x ENSG00000140678 ITGAX; CD11c x x Integrin alpha-X ENSG00000115232 ITGA4 CD49d; Integrin x x alpha-4 ENSG00000169896 ITGAM CD11b; Integrin x x alpha-M ENSG00000138378 STAT4 Stat4 x ENSG00000115415 STAT1 Stat1 x ENSG00000170581 STAT2 Stat2 x ENSG00000126561 STAT5a Stat5a x ENSG00000162434 JAK1 Jak1 x ENSG00000100453 GZMB Granzyme B x ENSG00000145649 GZMA Granzyme A x ENSG00000180644 PRF1 Perforin 1 x ENSG00000115523 GNLY Granulysin x ENSG00000100450 GZMH Granzyme H x ENSG00000113088 GZMK Granzyme K x ENSG00000057657 PRDM1 Blimp-1 x ENSG00000073861 TBX21 T-bet x ENSG00000115738 ID2 ID2 x ENSG00000176083 ZNF683 Hobit x ENSG00000137265 IRF4 Interferon x regulatory factor 4 ENSG00000140968 IRF8 Interferon
    [Show full text]
  • PFN2, a Novel Marker of Unfavorable Prognosis, Is a Potential Therapeutic
    Cui et al. J Transl Med (2016) 14:137 DOI 10.1186/s12967-016-0884-y Journal of Translational Medicine RESEARCH Open Access PFN2, a novel marker of unfavorable prognosis, is a potential therapeutic target involved in esophageal squamous cell carcinoma Xiao‑bin Cui1,2†, Shu‑mao Zhang1†, Yue‑xun Xu3, Hong‑wei Dang1, Chun‑xia Liu1, Liang‑hai Wang1, Lan Yang1, Jian‑ming Hu1, Wei‑hua Liang1, Jin‑fang Jiang1, Na Li4, Yong Li5*, Yun‑zhao Chen1* and Feng Li1,2* Abstract Background: Esophageal squamous cell carcinoma (ESCC) is one of the most aggressively malignant tumors with dismal prognosis. Profilin 2 (PFN2) is an actin-binding protein that regulates the dynamics of actin polymerization and plays a key role in cell motility. Recently, PFN2 have emerged as significant regulators of cancer processes. However, the clinical significance and biological function of PFN2 in ESCC remain unclear. Methods: PFN2 protein expression was validated by immunohistochemistry (IHC) on tissue microarray from Chinese Han and Kazakh populations with ESCC. The associations among PFN2 expression, clinicopathological features, and prognosis of ESCC were analyzed. The effects on cell proliferation, invasion and migration were examined using MTT and Transwell assays. Markers of epithelial–mesenchymal transition (EMT) were detected by Western blot analysis. Results: Compared with normal esophageal epithelium (NEE), PFN2 protein expression was markedly increased in low-grade intraepithelial neoplasia (LGIN), high-grade intraepithelial neoplasia (HGIN), and ESCC, increased gradually from LGIN to ESCC, and finally reached high grade in HGIN in the Han population. Similarly, PFN2 protein was more overexpressed in ESCC than in NEE in the Kazakh population.
    [Show full text]
  • Decreased Expression of Profilin 2 in Oral Squamous Cell Carcinoma and Its Clinicopathological Implications
    ONCOLOGY REPORTS 26: 813-823, 2011 Decreased expression of profilin 2 in oral squamous cell carcinoma and its clinicopathological implications C.Y. MA1,2, C.P. ZHANG1,2, L.P. ZHONG1,2, H.Y. PAN1,2, W.T. CHEN1,2, L.Z. WANG3, O.W. ANDREW4, T. JI1 and W. HAN1,2 1Department of Oral and Maxillofacial Surgery, Ninth People's Hospital, College of Stomatology; 2Shanghai Key Laboratory of Stomatology and Shanghai Research Institute of Stomatology; 3Department of Oral Pathology, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai 200011, P.R. China; 4Department of Oral and Maxillofacial Surgery, Faculty of Dentistry, National University of Singapore, Singapore 119074, Singapore Received February 8, 2011; Accepted April 11, 2011 DOI: 10.3892/or.2011.1365 Abstract. Profilins are small proteins essential for many clinical and pathological significance. In conclusion, PFN2 normal cellular dynamics and constitute one of the crucial can be utilized as both a potential suppressor marker and a components of actin-based cellular motility. Several recent prognostic protein for OSCC. The function of PFN2 may be to studies have implicated a role for the profilin (PFN) family in regulate the N-WASP/Arp2/3 signaling pathway. cancer pathogenesis and progression. However, their expression and promising functions are largely unknown in oral squamous Introduction cell carcinoma (OSCC). In this study, we analyzed the correlation between PFN1 and PFN2 expression in vitro and Oral squamous cell carcinoma (OSCC) is a significant public in vivo. The protein expression levels were roughly compared health problem with >300,000 new cases being diagnosed between cell lines (HIOEC, HB96) with the employment of annually worldwide (1).
    [Show full text]
  • A Cell Line P53 Mutation Type UM
    A Cell line p53 mutation Type UM-SCC 1 wt UM-SCC5 Exon 5, 157 GTC --> TTC Missense mutation by transversion (Valine --> Phenylalanine UM-SCC6 wt UM-SCC9 wt UM-SCC11A wt UM-SCC11B Exon 7, 242 TGC --> TCC Missense mutation by transversion (Cysteine --> Serine) UM-SCC22A Exon 6, 220 TAT --> TGT Missense mutation by transition (Tyrosine --> Cysteine) UM-SCC22B Exon 6, 220 TAT --> TGT Missense mutation by transition (Tyrosine --> Cysteine) UM-SCC38 Exon 5, 132 AAG --> AAT Missense mutation by transversion (Lysine --> Asparagine) UM-SCC46 Exon 8, 278 CCT --> CGT Missense mutation by transversion (Proline --> Alanine) B 1 Supplementary Methods Cell Lines and Cell Culture A panel of ten established HNSCC cell lines from the University of Michigan series (UM-SCC) was obtained from Dr. T. E. Carey at the University of Michigan, Ann Arbor, MI. The UM-SCC cell lines were derived from eight patients with SCC of the upper aerodigestive tract (supplemental Table 1). Patient age at tumor diagnosis ranged from 37 to 72 years. The cell lines selected were obtained from patients with stage I-IV tumors, distributed among oral, pharyngeal and laryngeal sites. All the patients had aggressive disease, with early recurrence and death within two years of therapy. Cell lines established from single isolates of a patient specimen are designated by a numeric designation, and where isolates from two time points or anatomical sites were obtained, the designation includes an alphabetical suffix (i.e., "A" or "B"). The cell lines were maintained in Eagle's minimal essential media supplemented with 10% fetal bovine serum and penicillin/streptomycin.
    [Show full text]
  • Supplemental Material
    Supplemental Table B ARGs in alphabetical order Symbol Title 3 months 6 months 9 months 12 months 23 months ANOVA Direction Category 38597 septin 2 1557 ± 44 1555 ± 44 1579 ± 56 1655 ± 26 1691 ± 31 0.05219 up Intermediate 0610031j06rik kidney predominant protein NCU-G1 491 ± 6 504 ± 14 503 ± 11 527 ± 13 534 ± 12 0.04747 up Early Adult 1G5 vesicle-associated calmodulin-binding protein 662 ± 23 675 ± 17 629 ± 16 617 ± 20 583 ± 26 0.03129 down Intermediate A2m alpha-2-macroglobulin 262 ± 7 272 ± 8 244 ± 6 290 ± 7 353 ± 16 0.00000 up Midlife Aadat aminoadipate aminotransferase (synonym Kat2) 180 ± 5 201 ± 12 223 ± 7 244 ± 14 275 ± 7 0.00000 up Early Adult Abca2 ATP-binding cassette, sub-family A (ABC1), member 2 958 ± 28 1052 ± 58 1086 ± 36 1071 ± 44 1141 ± 41 0.05371 up Early Adult Abcb1a ATP-binding cassette, sub-family B (MDR/TAP), member 1A 136 ± 8 147 ± 6 147 ± 13 155 ± 9 185 ± 13 0.01272 up Midlife Acadl acetyl-Coenzyme A dehydrogenase, long-chain 423 ± 7 456 ± 11 478 ± 14 486 ± 13 512 ± 11 0.00003 up Early Adult Acadvl acyl-Coenzyme A dehydrogenase, very long chain 426 ± 14 414 ± 10 404 ± 13 411 ± 15 461 ± 10 0.01017 up Late Accn1 amiloride-sensitive cation channel 1, neuronal (degenerin) 242 ± 10 250 ± 9 237 ± 11 247 ± 14 212 ± 8 0.04972 down Late Actb actin, beta 12965 ± 310 13382 ± 170 13145 ± 273 13739 ± 303 14187 ± 269 0.01195 up Midlife Acvrinp1 activin receptor interacting protein 1 304 ± 18 285 ± 21 274 ± 13 297 ± 21 341 ± 14 0.03610 up Late Adk adenosine kinase 1828 ± 43 1920 ± 38 1922 ± 22 2048 ± 30 1949 ± 44 0.00797 up Early
    [Show full text]
  • Serum Albumin OS=Homo Sapiens
    Protein Name Cluster of Glial fibrillary acidic protein OS=Homo sapiens GN=GFAP PE=1 SV=1 (P14136) Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2 Cluster of Isoform 3 of Plectin OS=Homo sapiens GN=PLEC (Q15149-3) Cluster of Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2 (P68871) Vimentin OS=Homo sapiens GN=VIM PE=1 SV=4 Cluster of Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2 (Q13509) Cluster of Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1 (P60709) Cluster of Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1 (P68363) Cluster of Isoform 2 of Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTAN1 (Q13813-2) Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2 Cluster of Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2 (Q01082) Cluster of Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM PE=1 SV=4 (P14618) Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3 Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5 Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4 Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5 Cluster of ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide OS=Homo sapiens GN=ATP1A2 PE=3 SV=1 (B1AKY9) Fibrinogen beta chain OS=Homo sapiens GN=FGB PE=1 SV=2 Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1 SV=2 Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1 Cluster of Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2 (P12814) 60 kDa heat shock protein, mitochondrial OS=Homo
    [Show full text]
  • Structural Heterogeneity of Cellular K5/K14 Filaments As Revealed by Cryo
    bioRxiv preprint doi: https://doi.org/10.1101/2021.05.12.442145; this version posted May 14, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Structural heterogeneity of cellular K5/K14 filaments as revealed by cryo- 2 electron microscopy 3 4 Short title: Structural heterogeneity of keratin filaments 5 6 7 Miriam S. Weber1, Matthias Eibauer1, Suganya Sivagurunathan2, Thomas M. Magin3, Robert D. 8 Goldman2, Ohad Medalia1* 9 1Department of Biochemistry, University of Zurich, Switzerland 10 2Department of Cell and Developmental Biology, Northwestern University Feinberg School of 11 Medicine, USA 12 3Institute of Biology, University of Leipzig, Germany 13 14 * Corresponding author: [email protected] 15 16 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.05.12.442145; this version posted May 14, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 17 Abstract 18 Keratin intermediate filaments are an essential and major component of the cytoskeleton in epithelial 19 cells. They form a stable yet dynamic filamentous network extending from the nucleus to the cell 20 periphery. Keratin filaments provide cellular resistance to mechanical stresses, ensure cell and tissue 21 integrity in addition to regulatory functions. Mutations in keratin genes are related to a variety of 22 epithelial tissue diseases that mostly affect skin and hair. Despite their importance, the molecular 23 structure of keratin filaments remains largely unknown. In this study, we analyzed the structure of 24 keratin 5/keratin 14 filaments within ghost keratinocytes by cryo-electron microscopy and cryo- 25 electron tomography.
    [Show full text]
  • P63 Transcription Factor Regulates Nuclear Shape and Expression of Nuclear Envelope
    Durham Research Online Deposited in DRO: 21 September 2017 Version of attached le: Published Version Peer-review status of attached le: Peer-reviewed Citation for published item: Rapisarda, Valentina and Malashchuk, Igor and Asamaowei, Inemo E. and Poterlowicz, Krzysztof and Fessing, Michael Y. and Sharov, Andrey A. and Karakesisoglou, Iakowos and Botchkarev, Vladimir A. and Mardaryev, Andrei (2017) 'p63 transcription factor regulates nuclear shape and expression of nuclear envelope-associated genes in epidermal keratinocytes.', Journal of investigative dermatology., 137 (10). pp. 2157-2167. Further information on publisher's website: https://doi.org/10.1016/j.jid.2017.05.013 Publisher's copyright statement: This article is available under the terms of the Creative Commons Attribution License (CC BY). You may copy and distribute the article, create extracts, abstracts and new works from the article, alter and revise the article, text or data mine the article and otherwise reuse the article commercially (including reuse and/or resale of the article) without permission from Elsevier. You must give appropriate credit to the original work, together with a link to the formal publication through the relevant DOI and a link to the Creative Commons user license above. You must indicate if any changes are made but not in any way that suggests the licensor endorses you or your use of the work. Additional information: Use policy The full-text may be used and/or reproduced, and given to third parties in any format or medium, without prior permission or charge, for personal research or study, educational, or not-for-prot purposes provided that: • a full bibliographic reference is made to the original source • a link is made to the metadata record in DRO • the full-text is not changed in any way The full-text must not be sold in any format or medium without the formal permission of the copyright holders.
    [Show full text]
  • Nuclear Envelope Laminopathies: Evidence for Developmentally Inappropriate Nuclear Envelope-Chromatin Associations
    Nuclear Envelope Laminopathies: Evidence for Developmentally Inappropriate Nuclear Envelope-Chromatin Associations by Jelena Perovanovic M.S. in Molecular Biology and Physiology, September 2009, University of Belgrade M.Phil. in Molecular Medicine, August 2013, The George Washington University A Dissertation submitted to The Faculty of The Columbian College of Arts and Sciences of The George Washington University in partial fulfillment of the requirements for the degree of Doctor of Philosophy August 31, 2015 Dissertation directed by Eric P. Hoffman Professor of Integrative Systems Biology The Columbian College of Arts and Sciences of The George Washington University certifies that Jelena Perovanovic has passed the Final Examination for the degree of Doctor of Philosophy as of May 5, 2015. This is the final and approved form of the dissertation. Nuclear Envelope Laminopathies: Evidence for Developmentally Inappropriate Nuclear Envelope-Chromatin Associations Jelena Perovanovic Dissertation Research Committee: Eric P. Hoffman, Professor of Integrative Systems Biology, Dissertation Director Anamaris Colberg-Poley, Professor of Integrative Systems Biology, Committee Member Robert J. Freishtat, Associate Professor of Pediatrics, Committee Member Vittorio Sartorelli, Senior Investigator, National Institutes of Health, Committee Member ii © Copyright 2015 by Jelena Perovanovic All rights reserved iii Acknowledgments I am deeply indebted to countless individuals for their support and encouragement during the past five years of graduate studies. First and foremost, I would like to express my gratitude to my mentor, Dr. Eric P. Hoffman, for his unwavering support and guidance, and keen attention to my professional development. This Dissertation would not have been possible without the critical input he provided and the engaging environment he created.
    [Show full text]
  • Exploring Profilin
    RESEARCH HIGHLIGHTS NEUROTRANSMISSION Exploring profilin DOI: 10.1038/nrn2182 Surprisingly, they found that Pfn2–/– mice, pointing towards a Pfn2–/– mice displayed normal higher vesicle release probability. development and brain anatomy. Immunoprecipitation and EM studies Learning and memory, long-term also indicated that the number of potentiation (LTP) and long-term docked vesicles is approximately 25% depression (LTD) were not impaired higher in Pfn2–/– mice. in Pfn2–/– mice when compared with How does profilin 2 alter vesicle control mice. These results suggest release? When neurotransmitter that profilin 2 is not required for secretion was stimulated in cortical development, synaptic plasticity or synaptosomes from control mice, learning and memory. F-actin levels were significantly The authors noticed, however, increased. This did not occur in that the Pfn2–/– mice behaved synaptosome preparations from differently to control mice. They Pfn2–/– mice. In addition, profilin 2, were hyperactive, and they showed but not profilin 1, was shown to be elevated exploratory and novelty- tightly associated with the WAVE- Profilins are regulators of actin seeking behaviour when placed into complex, a protein complex that is polymerization. Profilin 2 is a new environment. This included implicated in actin dynamics and expressed mainly in neurons, but increased locomotor activity, wall is abundant in synaptosomal prepa- its specific function is unknown. A rearings and rearings in the centre of rations. The authors therefore study by Boyl et al. provides evidence the experimental area. Conversely, suggest that WAVE and profilin 2 that profilin 2 is required for activ- in the familiar environment of their might cooperate to restrict synaptic ity-stimulated actin polymerization home cage, they showed reduced vesicle release.
    [Show full text]
  • Epigenetic Regulation of Smad2 and Smad3 by Profilin-2 Promotes Lung Cancer Growth and Metastasis
    ARTICLE Received 26 May 2014 | Accepted 29 Jul 2015 | Published 10 Sep 2015 DOI: 10.1038/ncomms9230 Epigenetic regulation of Smad2 and Smad3 by profilin-2 promotes lung cancer growth and metastasis Yun-Neng Tang1, Wei-Qiao Ding1, Xiao-Jie Guo1, Xin-Wang Yuan1, Dong-Mei Wang1 & Jian-Guo Song1 Altered transforming growth factor-b (TGF-b) signalling has been implicated in tumour development and progression. However, the molecular mechanism behind this alteration is poorly understood. Here we show that profilin-2 (Pfn2) increases Smad2 and Smad3 expression via an epigenetic mechanism, and that profilin-2 and Smad expression correlate with an unfavourable prognosis of lung cancer patients. Profilin-2 overexpression promotes, whereas profilin-2 knockdown drastically reduces, lung cancer growth and metastasis. We show that profilin-2 suppresses the recruitment of HDAC1 to Smad2 and Smad3 promoters by preventing nuclear translocation of HDAC1 through protein–protein interaction at the C terminus of both proteins, leading to the transcriptional activation of Smad2 and Smad3. Increased Smad2 and Smad3 expression enhances TGF-b1-induced EMT and production of the angiogenic factors VEGF and CTGF. These findings reveal a new regulatory mechanism of TGF-b1/Smad signalling, and suggest a potential molecular target for the development of anticancer drugs. 1 State Key Laboratory of Cell Biology, Innovation Center for Cell Signalling Network, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China. Correspondence and requests for materials should be addressed to J.-G.S. (email: [email protected]). NATURE COMMUNICATIONS | 6:8230 | DOI: 10.1038/ncomms9230 | www.nature.com/naturecommunications 1 & 2015 Macmillan Publishers Limited.
    [Show full text]
  • Knock-Out Validated Antibodies from Cloud-Clone Cat.No
    Knock-out validated antibodies from Cloud-Clone Cat.No. Target PAA778Hu01 B-Cell Leukemia/Lymphoma 2 (Bcl2) PAL763Hu01 Myxovirus Resistance 1 (MX1) PAB698Hu01 Lactate Dehydrogenase B (LDHB) PAA009Hu01 Angiopoietin 2 (ANGPT2) PAA849Ra01 Glycogen Phosphorylase, Liver (PYGL) PAA153Hu01 Alpha-Fetoprotein (aFP) PAF460Hu01 Folate Receptor 1, Adult (FOLR1) PAB233Hu01 Cyclin Dependent Kinase 4 (CDK4) PAA150Hu04 Carcinoembryonic Antigen (CEA) PAB905Hu01 Interleukin 7 Receptor (IL7R) PAC823Hu01 Thymidine Kinase 1, Soluble (TK1) PAH838Hu01 Isocitrate Dehydrogenase 2, mitochondrial (IDH2) PAK078Mu01 Fas Associating Death Domain Containing Protein (FADD) PAA537Hu01 Enolase, Neuron Specific (NSE) PAA651Hu01 Hyaluronan Binding Protein 1 (HABP1) PAB215Hu02 Fibrinogen Beta (FGb) PAB769Hu01 S100 Calcium Binding Protein A6 (S100A6) PAB231Hu01 Keratin 18 (KRT18) PAH839Hu01 Isocitrate Dehydrogenase 1, Soluble (IDH1) PAE748Hu01 Karyopherin Alpha 2 (KPNa2) PAB081Hu02 Heat Shock 70kDa Protein 1A (HSPA1A) PAA778Mu01 B-Cell Leukemia/Lymphoma 2 (Bcl2) PAA853Hu03 Caspase 8 (CASP8) PAA399Mu01 High Mobility Group Protein 1 (HMG1) PAA303Mu01 Galectin 3 (GAL3) PAA537Mu02 Enolase, Neuron Specific (NSE) PAA994Ra01 Acid Phosphatase 1 (ACP1) PAB083Ra01 Superoxide Dismutase 2, Mitochondrial (SOD2) PAB449Mu01 Enolase, Non Neuronal (NNE) PAA376Mu01 Actinin Alpha 2 (ACTN2) PAA553Ra01 Matrix Metalloproteinase 9 (MMP9) PAA929Bo01 Retinol Binding Protein 4, Plasma (RBP4) PAA491Ra02 Keratin 2 (KRT2) PAC025Hu01 Keratin 8 (KRT8) PAB231Mu01 Keratin 18 (KRT18) PAC598Hu03 Vanin 1 (VNN1)
    [Show full text]