Periphytic Cyanobacteria in Different Environments from the Upper Paraná River Floodplain, Brazil. Introduction
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DOMAIN Bacteria PHYLUM Cyanobacteria
DOMAIN Bacteria PHYLUM Cyanobacteria D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub IV F Homoeotrichaceae Chamaesiphonaceae Ammatoideaceae Microchaetaceae Borzinemataceae Family I Family I Family I Chroococcaceae Borziaceae Nostocaceae Capsosiraceae Dermocarpellaceae Gomontiellaceae Rivulariaceae Chlorogloeopsaceae Entophysalidaceae Oscillatoriaceae Scytonemataceae Fischerellaceae Gloeobacteraceae Phormidiaceae Loriellaceae Hydrococcaceae Pseudanabaenaceae Mastigocladaceae Hyellaceae Schizotrichaceae Nostochopsaceae Merismopediaceae Stigonemataceae Microsystaceae Synechococcaceae Xenococcaceae S-F Homoeotrichoideae Note: Families shown in green color above have breakout charts G Cyanocomperia Dactylococcopsis Prochlorothrix Cyanospira Prochlorococcus Prochloron S Amphithrix Cyanocomperia africana Desmonema Ercegovicia Halomicronema Halospirulina Leptobasis Lichen Palaeopleurocapsa Phormidiochaete Physactis Key to Vertical Axis Planktotricoides D=Domain; P=Phylum; C=Class; O=Order; F=Family Polychlamydum S-F=Sub-Family; G=Genus; S=Species; S-S=Sub-Species Pulvinaria Schmidlea Sphaerocavum Taxa are from the Taxonomicon, using Systema Natura 2000 . Triochocoleus http://www.taxonomy.nl/Taxonomicon/TaxonTree.aspx?id=71022 S-S Desmonema wrangelii Palaeopleurocapsa wopfnerii Pulvinaria suecica Key Genera D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub -
New Record of Cyanoprokaryotes from West Bengal in Maldah District
ISSN (E): 2349 – 1183 ISSN (P): 2349 – 9265 4(3): 421–432, 2017 DOI: 10.22271/tpr.201 7.v4.i3 .056 Research article New record of Cyanoprokaryotes from West Bengal in Maldah district Pratibha Gupta Botanical Survey of India, Ministry of Environment Forests & Climate Change, Government of India, AJCBIBG, CNH Building, Botanic Garden, Howrah-711103, India *Corresponding Author: [email protected] [Accepted: 22 November 2017] Abstract: Systematic survey and collection of Cyanoprokaryotes were carried out from different water bodies of Maldah District, West Bengal. During survey samples were sampled from 55 different water bodies of this area comprising 05 sites in rivers, 32 bils, 07 dighis, 02 Jheels, 09 ponds for which surveyed all administrative blocks of Maldah District namely Ratua I, Ratua II, Harishchandrapur I, Harishchandrapur II, Chanchal I, Chanchal II, Manikchak, Gazol, Habibpur, Bamangola, Old Maldah, English Bazar and Kaliachak. During the study, altogether 22 genera and 105 species (comprising 93 species, 09 varieties and 03 forms) were identified from different types of water bodies of Maldah District. Out of these 105, 27 species have been recorded from West Bengal. These species have been described here along with nomenclature and distribution. Keywords: Cyanoprokaryotes - New Record - Maldah District - West Bengal. [Cite as: Gupta P (2017) New record of Cyanoprokaryotes from West Bengal in Maldah district. Tropical Plant Research 4(3): 421–432] INTRODUCTION Maldah district is one of important district among 19 districts of West Bengal. The major river the Ganges flows along south-western boundary of the district followed by another major rivers like Mahananda, Fulhar and Kalindri. -
(Cyanobacterial Genera) 2014, Using a Polyphasic Approach
Preslia 86: 295–335, 2014 295 Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach Taxonomické hodnocení cyanoprokaryot (cyanobakteriální rody) v roce 2014 podle polyfázického přístupu Jiří K o m á r e k1,2,JanKaštovský2, Jan M a r e š1,2 & Jeffrey R. J o h a n s e n2,3 1Institute of Botany, Academy of Sciences of the Czech Republic, Dukelská 135, CZ-37982 Třeboň, Czech Republic, e-mail: [email protected]; 2Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, CZ-370 05 České Budějovice, Czech Republic; 3Department of Biology, John Carroll University, University Heights, Cleveland, OH 44118, USA Komárek J., Kaštovský J., Mareš J. & Johansen J. R. (2014): Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. – Preslia 86: 295–335. The whole classification of cyanobacteria (species, genera, families, orders) has undergone exten- sive restructuring and revision in recent years with the advent of phylogenetic analyses based on molecular sequence data. Several recent revisionary and monographic works initiated a revision and it is anticipated there will be further changes in the future. However, with the completion of the monographic series on the Cyanobacteria in Süsswasserflora von Mitteleuropa, and the recent flurry of taxonomic papers describing new genera, it seems expedient that a summary of the modern taxonomic system for cyanobacteria should be published. In this review, we present the status of all currently used families of cyanobacteria, review the results of molecular taxonomic studies, descriptions and characteristics of new orders and new families and the elevation of a few subfamilies to family level. -
Annamia Toxica Gen. Et Sp. Nov. (Cyanobacteria), a Freshwater Cyanobacterium from Vietnam That Produces Microcystins: Ultrastruc
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/236229830 Annamia toxica gen. et sp. nov. (Cyanobacteria), a freshwater cyanobacterium from Vietnam that produces microcystins: Ultrastructure, toxicity and molecular phylogenetic. Article in Phycologia · January 2013 DOI: 10.2216/10-097.1 CITATIONS READS 8 349 4 authors, including: Lien Thi Thu Nguyen Øjvind Moestrup Hue University University of Copenhagen 9 PUBLICATIONS 61 CITATIONS 155 PUBLICATIONS 6,559 CITATIONS SEE PROFILE SEE PROFILE Niels Daugbjerg University of Copenhagen 153 PUBLICATIONS 3,507 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Planktic cyanobacteria from freshwater localities in Thuathien-Hue Province, Vietnam View project Taxonomy View project All content following this page was uploaded by Niels Daugbjerg on 03 June 2014. The user has requested enhancement of the downloaded file. Phycologia (2013) Volume 52 (1), 25–36 Published 4 January 2013 Annamia toxica gen. et sp. nov. (Cyanobacteria), a freshwater cyanobacterium from Vietnam that produces microcystins: ultrastructure, toxicity and molecular phylogenetics 1,2 3 2 2* LIEN THI THU NGUYEN ,GERTRUD CRONBERG ,ØJVIND MOESTRUP AND NIELS DAUGBJERG 1Department of Biology, College of Sciences, Hue University, 77 Nguyen Hue, Thuathien-Hue, Vietnam 2Marine Biological Section, Department of Biology, University of Copenhagen, Universitetsparken 4, DK-2100 Copenhagen Ø, Denmark 3Tygelsjo¨va¨gen 127, SE-21873 Tygelsjo¨, Sweden NGUYEN L.T.T., CRONBERG G., MOESTRUP Ø. AND DAUGBJERG N. 2013. Annamia toxica gen. et sp. nov. (Cyanobacteria), a freshwater cyanobacterium from Vietnam that produces microcystins: ultrastructure, toxicity and molecular phylogenetics. Phycologia 52: 25–36. -
Cyanobacteria) Through Recognition of Four Families Including Oculatellaceae Fam
John Carroll University Carroll Collected Masters Theses Theses, Essays, and Senior Honors Projects Winter 2016 REVISION OF THE SYNECHOCOCCALES (CYANOBACTERIA) THROUGH RECOGNITION OF FOUR FAMILIES INCLUDING OCULATELLACEAE FAM. NOV. AND TRICHOCOLEACEAE FAM NOV. AND SEVEN NEW GENERA ONTC AINING 14 SPECIES Truc Mai John Carroll University, [email protected] Follow this and additional works at: http://collected.jcu.edu/masterstheses Part of the Biology Commons Recommended Citation Mai, Truc, "REVISION OF THE SYNECHOCOCCALES (CYANOBACTERIA) THROUGH RECOGNITION OF FOUR FAMILIES INCLUDING OCULATELLACEAE FAM. NOV. AND TRICHOCOLEACEAE FAM NOV. AND SEVEN NEW GENERA ONC TAINING 14 SPECIES" (2016). Masters Theses. 23. http://collected.jcu.edu/masterstheses/23 This Thesis is brought to you for free and open access by the Theses, Essays, and Senior Honors Projects at Carroll Collected. It has been accepted for inclusion in Masters Theses by an authorized administrator of Carroll Collected. For more information, please contact [email protected]. REVISION OF THE SYNECHOCOCCALES (CYANOBACTERIA) THROUGH RECOGNITION OF FOUR FAMILIES INCLUDING OCULATELLACEAE FAM. NOV. AND TRICHOCOLEACEAE FAM NOV. AND SEVEN NEW GENERA CONTAINING 14 SPECIES A Thesis Submitted to The Graduate School of John Carroll University in Partial Fulfillment of the Requirements for the Degree of Master of Science By Truc T. Mai 2016 ACKNOWLEDGEMENTS My appreciation would go first and foremost to Dr. Jeffrey R. Johansen and Dr. Nicole Pietrasiak for providing such wonderful care and guidance both in research and in life, so much as I look to them and their families as my own. My special gratitude also goes to Dr. Chris Sheil and Dr. Michael P. -
Morphological and Genetical Variability of Cyanobacteria
Palacký University Olomouc Faculty of Science Department of Botany Morphological and genetical variability of cyanobacteria Ph.D. Thesis Mgr. Petr Dvořák Supervisor: Prof. RNDr. Aloisie Poulíčková, CSc. Olomouc 2013 Acknowledgements I would like to express my gratitude to Professor Aloisie Poulíčková for her friendly and professional supervision. I am also grateful to Doc. Petr Hašler who helped me get through the complicated microcosm of cyanobacterial evolution. I thank my colleagues Dr. Jeff Johansen and Melissa Vaccarino who introduced me to molecular techniques. Finally, gratitude goes to my colleagues from the Departments of Botany and Ecology who provided a friendly and inspiring environment for my research. Declaration I declare that this Ph.D. thesis has been written solely by myself. All the sources quoted in this work are listed in the “Reference” sections. All published results included in this thesis have been approved by the co-authors. In Olomouc, 16th January, 2013 Mgr. Petr Dvořák Abstract Recent discoveries point to the significance of cyanobacteria as primary producers in diverse ecosystems. However, given their enormous diversity, the majority remain uncharacterized. In this thesis, I have investigated the morphological and molecular features of benthic and aerophytic cyanobacteria and explored the global spatial and temporal patterns of their dispersal within free-living cyanobacteria. The taxonomy of Nodularia sphaerocarpa, N. harveyana, and N. moravica was investigated by a combination of 16S rRNA sequencing, AFLP and ecophysiological experiments using a gradient of salinity. Ecophysiological experiments revealed that N. sphaerocarpa together with N. moravica are more sensitive to higher salinity while, N. harveyana is less sensitive and its morphology (i.e. -
Revision of the Synechococcales (Cyanobacteria) Through Recognition of Four Families Including Oculatellaceae Fam
Phytotaxa 365 (1): 001–059 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2018 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.365.1.1 Revision of the Synechococcales (Cyanobacteria) through recognition of four families including Oculatellaceae fam. nov. and Trichocoleaceae fam. nov. and six new genera containing 14 species TRUC MAI1, 3*, JEFFREY R. JOHANSEN1,2, NICOLE PIETRASIAK3, MARKÉTA BOHUNICKÁ4, & MICHAEL P. MARTIN1 1Department of Biology, John Carroll University, 1 John Carroll Blvd., University Heights, Ohio 44118, USA 2Department of Botany, Faculty of Science, University of South Bohemia, 31 Branišovská, 37005 České Budějovice, Czech Republic 3Department of Plant and Environmental Sciences, New Mexico State University, Skeen Hall Room N127, P.O Box 30003 MSC 3Q, Las Cruces, New Mexico 88003, USA. 4Department of Biology, Faculty of Science, University of Hradec Králové, Rokitanského 62, 500 03 Hradec Králové, Czech Republic *Corresponding author ([email protected]) Abstract A total of 48 strains of thin, filamentous cyanobacteria in Synechococcales were studied by sequencing 16S rRNA and rpoC1 sequence fragments. We also carefully characterized a subset of these by morphology. Phylogenetic analysis of the 16S rRNA gene data using Bayesian inference of a large Synechococcales alignment (345 OTU’s) was in agreement with the phylogeny based on the rpoC1 gene for 59 OTU’s. Both indicated that the large family-level grouping formerly classified as the Leptolyngbyaceae could be further divided into four family-level clades. Two of these family-level clades have been recognized previously as Leptolyngbyaceae and Prochlorotrichaceae. Oculatellaceae fam. -
Diazotrophy and Diversity of Benthic Cyanobacteria in Tropical Coastal Zones
Diazotrophy and diversity of benthic cyanobacteria in tropical coastal zones Karolina Bauer Stockholm University © Karolina Bauer, Stockholm 2007 ISBN 91-7155-367-3 pp. 1-48 Printed in Sweden by Universitetsservice, US-AB, Stockholm 2007 Distributor: Stockholm University library Till mamma och pappa Abstract Discoveries in recent years have disclosed the importance of marine cyano- bacteria in the context of primary production and global nitrogen cycling. It is hypothesized here that microbial mats in tropical coastal habitats harbour a rich diversity of previously uncharacterized cyanobacteria and that benthic marine nitrogen fixation in coastal zones is substantial. A polyphasic approach was used to investigate cyanobacterial diversity in three tropical benthic marine habitats of different characters; an intertidal sand flat and a mangrove forest floor in the Indian Ocean, and a beach rock in the Pacific Ocean. In addition, nitrogenase activity was measured over diel cycles at all sites. The results revealed high cyanobacterial diversity, both morphologically and genetically. Substantial nitrogenase activity was observed, with highest rates at daytime where heterocystous species were present. However, the three habitats were dominated by non-heterocystous and unicellular genera such as Microcoleus, Lyngbya, Cyanothece and a large group of thin filamentous species, identified as members of the Pseu- danabaenaceae family. In these consortia nocturnal nitrogenase activities were highest and nifH sequencing also revealed presence of non- cyanobacterial potential diazotrophs. A conclusive phylogenetic analysis of partial nifH sequences from the three sites and sequences from geographi- cally distant microbial mats revealed new clusters of benthic potentially ni- trogen-fixing cyanobacteria. Further, the non-heterocystous cyanobacterium Lyngbya majuscula was subjected to a physiological characterization to gain insights into regulatory aspects of its nitrogen fixation. -
Distribution of Epiphytic Cyanobacteria on Red Macroalgal Species Occurring at a Rocky Shore (Buleji), Karachi, Pakistan
BANO ET AL (2017), FUUAST J.BIOL., 7(2): 231-239 DISTRIBUTION OF EPIPHYTIC CYANOBACTERIA ON RED MACROALGAL SPECIES OCCURRING AT A ROCKY SHORE (BULEJI), KARACHI, PAKISTAN AZRA BANO1 AND PIRZADA. J. A. SIDDIQUI 2 1 Lasbela University of Agriculture Water and Marine Sciences, Uthal-90150, Baluchistan, 2Centre Of Excellence in Marine Biology, University of Karachi, Karachi-75270, Pakistan * Corresponding author e-mail [email protected] خﻻصہ موجودہ مطالعہ کے دوران cyanobacteriaکی نوع بھولے جی کراچی کے ساحل سے معلوم ہوا کی گئی۔کل 67انواع سرخ الجی کے ساتھ چپکی ہوئی حالت میں اس گرہ کی پائی گئی ہیں۔ رودافائی سی انواع ہیں ,Melanothammus somalliens, Laurencia pinnatifida ceramium monorencse, centroeras clavulatum, Hypxeapannusa, calliblipharis fimbriata, Galaxaures oblongata موجود تھیں۔Cyanobetesiaکی انواع کی جماعت بندی 4 آدرز میں کی گئی یعنی آڈر Nostocales میں Chroococcale 641میں Chamaesiphonales,17میں 6اور pleurocapsalesآڈر میں دو انواع رکھیں گئیں۔ سب سے زیادہ افراد یعنی 23انواع Hypnea pannusaپر جبکہ سب سے کم یعنی چھ انواع Calliblepharis fimbriataپر چپکی حالت میں پائی گئی۔ تیں مختلف اقسام کے میڈیا (Miquels, MN, ASN)یا تو قدرتی تور پر تیار کیئے گئے یا مصنوعی سمندر کے پانی کو استعمال کیا گیا موجودی تجربات کے دوران Abstract In the present research the epiphytic species of cyanobacteria were recorded in the coastal region of Buleji, Karachi. In total 67 species of cyanobacteria were found attached to the surface of red algae. The rhodophycean species were Galaxaura oblongata, Calliblipharis fimbriata, Hypnea pannosa, Centroceras clavlulatum, ceramium manorense, Laurencia pinnatifida and Melanothamnus somaliensis. The species of cyanobacteria were classified in the four orders Nostocales, (41 species) Chroococcales (17 species), Chamaesiphonales (6 species) and Pleurocapsales (2 species). -
Ninth NAWQA Workshop (.Pdf)
Ninth USGS NAWQA Workshop on Harmonization of Algal Taxa December 13-15, 2002 Report No. 06-01 Patrick Center for Environmental Research Academy of Natural Sciences 1900 Benjamin Franklin Parkway Philadelphia, PA 19103-1195 January 4, 2006 Table of Contents Introduction and Agenda ............................................................................................................1 Cyanophytes – Jeff Johansen......................................................................................................2 References for the Taxonomy of Non Diatom Algae – Rex Lowe ...........................................3 Red Algae – Julie Hambrook......................................................................................................4 USGS NAWQA Non-Diatom Algae List....................................................................................5 Appendices: Appendix A Agenda for the 9th USGS NAWQA Workshop on Harmonization of Algal Taxonomy...6 Appendix B Outline of Cyanophyte Taxonomy.....................................................................................8 Appendix C Annotated List of Non-Diatom Algae References and Monographs...............................26 Appendix D 2001-Start NAWQA Non-Diatom Algal Taxa List.........................................................36 Appendix E 2001- Start NAWQA Non-Diatom Algae Taxonomic Changes......................................78 i Introduction and Agenda The Ninth USGS NAWQA Workshop on Harmonization of Algal Taxonomy was held in the Patrick Center for Environmental