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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Grade 11 Informational Mini-Assessment Stalagmite Trio This Grade 11 Mini-Assessment Is Based on Two Texts and an Accompanying Video About Cave Formations
Grade 11 Informational Mini-Assessment Stalagmite Trio This grade 11 mini-assessment is based on two texts and an accompanying video about cave formations. The subject matter, as well as the stimuli, allow for the testing of the Common Core State Standards (CCSS) for Literacy in Science and Technical Subjects and the Reading Standards for Informational Texts. The texts are worthy of students’ time to read, and the video adds a multimedia component to make the task a more complete and authentic representation of research. The texts meet the expectations for text complexity at grade 11. Assessments aligned to the CCSS will employ quality, complex texts such as these, and some assessments will include multimedia stimuli as demonstrated by this mini-assessment. Questions aligned to the CCSS should be worthy of students’ time to answer and therefore do not focus on minor points of the texts. Several standards may be addressed within the same question because complex texts tend to yield rich assessment questions that call for deep analysis. In this mini-assessment there are twelve questions that address the Reading Standards below. There is also one constructed response item that addresses Reading, Writing, and Language standards. We encourage educators to give students the time that they need to read closely and write to sources. Please note that this mini- assessment is likely to take at least two class periods. Note for teachers of English Language Learners (ELLs): This assessment is designed to measure students’ ability to read and write in English. Therefore, educators will not see the level of scaffolding typically used in instructional materials to support ELLs—these would interfere with the ability to understand their mastery of these skills. -
Zootaxa,Crustacean Classification
Zootaxa 1668: 313–325 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Crustacean classification: on-going controversies and unresolved problems* GEOFF A. BOXSHALL Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom E-mail: [email protected] *In: Zhang, Z.-Q. & Shear, W.A. (Eds) (2007) Linnaeus Tercentenary: Progress in Invertebrate Taxonomy. Zootaxa, 1668, 1–766. Table of contents Abstract . 313 Introduction . 313 Treatment of parasitic Crustacea . 315 Affinities of the Remipedia . 316 Validity of the Entomostraca . 318 Exopodites and epipodites . 319 Using of larval characters in estimating phylogenetic relationships . 320 Fossils and the crustacean stem lineage . 321 Acknowledgements . 322 References . 322 Abstract The journey from Linnaeus’s original treatment to modern crustacean systematics is briefly characterised. Progress in our understanding of phylogenetic relationships within the Crustacea is linked to continuing discoveries of new taxa, to advances in theory and to improvements in methodology. Six themes are discussed that serve to illustrate some of the major on-going controversies and unresolved problems in the field as well as to illustrate changes that have taken place since the time of Linnaeus. These themes are: 1. the treatment of parasitic Crustacea, 2. the affinities of the Remipedia, 3. the validity of the Entomostraca, 4. exopodites and epipodites, 5. using larval characters in estimating phylogenetic rela- tionships, and 6. fossils and the crustacean stem-lineage. It is concluded that the development of the stem lineage concept for the Crustacea has been dominated by consideration of taxa known only from larval or immature stages. -
Speleothem Evidence from Oman for Continental Pluvial Events During Interglacial Periods
Speleothem evidence from Oman for continental pluvial events during interglacial periods Stephen J. Burns Dominik Fleitmann Albert Matter Institute of Geology, University of Bern, CH-3012 Bern, Switzerland Ulrich Neff Augusto Mangini Heidelberg Academy of Sciences, D-69120 Heidelberg, Germany ABSTRACT Growth periods and stable isotope analyses of speleothems from Hoti Cave in northern Oman provide a record of continental pluvial periods extending back over the past four of Earth's glacial-interglacial cycles. Rapid speleothem growth occurred during the early to middle Holocene (6±10.5 ka B.P.), 78±82 ka B.P., 120±135 ka B.P., 180±200 ka B.P., and 300±325 ka B.P. The speleothem calcite deposited during each of these episodes is highly depleted in 18O compared to modern speleothems. The d18O values for calcite deposited within pluvial periods generally fall in the range of 24½ to 28½ relative to the Vienna Peedee belemnite standard, whereas modern speleothems range from 21½ to 23½. The growth and isotopic records indicate that during peak interglacial periods, the limit of the monsoon rainfall was shifted far north of its present location and each pluvial period was coincident with an interglacial stage of the marine oxygen isotope record. The association of continental pluvial periods with peak interglacial conditions suggests that glacial boundary conditions, and not changes in solar radiation, are the primary control on continental wetness on glacial-interglacial time scales. Keywords: speleothems, stable isotopes, Oman, monsoon, uranium-series method. INTRODUCTION rine and continental records show that its in- such as the extent of glaciation on the Hima- How climate in Earth's tropical regions var- tensity has varied considerably in the recent layan plateau or sea-surface temperatures? ied over the course of Earth's glacial-intergla- past. -
Fundamentos Conceptuales Y Didácticos Iguzquiza2 1 Unidad Del IGME En Las Islas Baleares
y El karst en cifras ¿cuáles son las mayores cavidades del mundo y por qué? Karst in figure: which are the major cavities of the world and why? Pedro Agustín Robledo Ardila1, Juan José Durán Valsero2 Y Eulogio Pardo Fundamentos Conceptuales Didácticos Iguzquiza2 1 Unidad del IGME en las Islas Baleares. C/Felicià Fuster 7, 07006, Palma de Mallorca, Baleares. E-mail: [email protected] 2 IGME. C/Ríos Rosas nº 23, 28003, Madrid. E-mail: [email protected], [email protected] Resumen Entre los terrenos kársticos superficiales y subterráneos, las cuevas son, actualmente para determinados colectivos, el producto más interesante del karst y, que de forma creciente, ha atraído la curiosidad humana desde que los seres humanos habitan el Planeta. Prueba de ello son los restos de arte rupestre y yacimientos paleontológicos descritos en muchas cuevas o el creciente número de visitantes anuales que tienen. Sin embargo, en las últimas décadas los equipos de científicos y espeleólogos se han ocupado especialmente del karst en términos de cifras, con especial énfasis en grandes cavidades. Bien, atendiendo al tamaño de las mismas en su desarrollo horizontal o vertical, o de forma parcial, midiendo volúmenes de galerías y conductos, cámaras o espeleotemas, entre otros elementos. Existen exhaustivos rankings de los sistemas de cavidades de mayor longitud total de galerías exploradas, de las salas más grandes, de las cuevas más profundadas o de los espeleotemas más grandes en su tipo. Esto ha condicionando que, por un lado, exista un auge en la investigación de los sistemas endokársticos más grandes del mundo, y por otro, que paisajes superficiales kársticos espectaculares del Planeta hayan pasado a un segundo orden en cuanto a el interés científico o turístico. -
Novel Bacterial Diversity in an Anchialine Blue Hole On
NOVEL BACTERIAL DIVERSITY IN AN ANCHIALINE BLUE HOLE ON ABACO ISLAND, BAHAMAS A Thesis by BRETT CHRISTOPHER GONZALEZ Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE December 2010 Major Subject: Wildlife and Fisheries Sciences NOVEL BACTERIAL DIVERSITY IN AN ANCHIALINE BLUE HOLE ON ABACO ISLAND, BAHAMAS A Thesis by BRETT CHRISTOPHER GONZALEZ Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Approved by: Chair of Committee, Thomas Iliffe Committee Members, Robin Brinkmeyer Daniel Thornton Head of Department, Thomas Lacher, Jr. December 2010 Major Subject: Wildlife and Fisheries Sciences iii ABSTRACT Novel Bacterial Diversity in an Anchialine Blue Hole on Abaco Island, Bahamas. (December 2010) Brett Christopher Gonzalez, B.S., Texas A&M University at Galveston Chair of Advisory Committee: Dr. Thomas Iliffe Anchialine blue holes found in the interior of the Bahama Islands have distinct fresh and salt water layers, with vertical mixing, and dysoxic to anoxic conditions below the halocline. Scientific cave diving exploration and microbiological investigations of Cherokee Road Extension Blue Hole on Abaco Island have provided detailed information about the water chemistry of the vertically stratified water column. Hydrologic parameters measured suggest that circulation of seawater is occurring deep within the platform. Dense microbial assemblages which occurred as mats on the cave walls below the halocline were investigated through construction of 16S rRNA clone libraries, finding representatives across several bacterial lineages including Chlorobium and OP8. -
Polyploidy and the Evolutionary History of Cotton
POLYPLOIDY AND THE EVOLUTIONARY HISTORY OF COTTON Jonathan F. Wendel1 and Richard C. Cronn2 1Department of Botany, Iowa State University, Ames, Iowa 50011, USA 2Pacific Northwest Research Station, USDA Forest Service, 3200 SW Jefferson Way, Corvallis, Oregon 97331, USA I. Introduction II. Taxonomic, Cytogenetic, and Phylogenetic Framework A. Origin and Diversification of the Gossypieae, the Cotton Tribe B. Emergence and Diversification of the Genus Gossypium C. Chromosomal Evolution and the Origin of the Polyploids D. Phylogenetic Relationships and the Temporal Scale of Divergence III. Speciation Mechanisms A. A Fondness for Trans-oceanic Voyages B. A Propensity for Interspecific Gene Exchange IV. Origin of the Allopolyploids A. Time of Formation B. Parentage of the Allopolyploids V. Polyploid Evolution A. Repeated Cycles of Genome Duplication B. Chromosomal Stabilization C. Increased Recombination in Polyploid Gossypium D. A Diverse Array of Genic and Genomic Interactions E. Differential Evolution of Cohabiting Genomes VI. Ecological Consequences of Polyploidization VII. Polyploidy and Fiber VIII. Concluding Remarks References The cotton genus (Gossypium ) includes approximately 50 species distributed in arid to semi-arid regions of the tropic and subtropics. Included are four species that have independently been domesticated for their fiber, two each in Africa–Asia and the Americas. Gossypium species exhibit extraordinary morphological variation, ranging from herbaceous perennials to small trees with a diverse array of reproductive and vegetative -
Speleothem Paleoclimatology for the Caribbean, Central America, and North America
quaternary Review Speleothem Paleoclimatology for the Caribbean, Central America, and North America Jessica L. Oster 1,* , Sophie F. Warken 2,3 , Natasha Sekhon 4, Monica M. Arienzo 5 and Matthew Lachniet 6 1 Department of Earth and Environmental Sciences, Vanderbilt University, Nashville, TN 37240, USA 2 Department of Geosciences, University of Heidelberg, 69120 Heidelberg, Germany; [email protected] 3 Institute of Environmental Physics, University of Heidelberg, 69120 Heidelberg, Germany 4 Department of Geological Sciences, Jackson School of Geosciences, University of Texas, Austin, TX 78712, USA; [email protected] 5 Desert Research Institute, Reno, NV 89512, USA; [email protected] 6 Department of Geoscience, University of Nevada, Las Vegas, NV 89154, USA; [email protected] * Correspondence: [email protected] Received: 27 December 2018; Accepted: 21 January 2019; Published: 28 January 2019 Abstract: Speleothem oxygen isotope records from the Caribbean, Central, and North America reveal climatic controls that include orbital variation, deglacial forcing related to ocean circulation and ice sheet retreat, and the influence of local and remote sea surface temperature variations. Here, we review these records and the global climate teleconnections they suggest following the recent publication of the Speleothem Isotopes Synthesis and Analysis (SISAL) database. We find that low-latitude records generally reflect changes in precipitation, whereas higher latitude records are sensitive to temperature and moisture source variability. Tropical records suggest precipitation variability is forced by orbital precession and North Atlantic Ocean circulation driven changes in atmospheric convection on long timescales, and tropical sea surface temperature variations on short timescales. On millennial timescales, precipitation seasonality in southwestern North America is related to North Atlantic climate variability. -
Ecological and Socio-Economic Impacts of Dive
ECOLOGICAL AND SOCIO-ECONOMIC IMPACTS OF DIVE AND SNORKEL TOURISM IN ST. LUCIA, WEST INDIES Nola H. L. Barker Thesis submittedfor the Degree of Doctor of Philosophy in Environmental Science Environment Department University of York August 2003 Abstract Coral reefsprovide many servicesand are a valuableresource, particularly for tourism, yet they are suffering significant degradationand pollution worldwide. To managereef tourism effectively a greaterunderstanding is neededof reef ecological processesand the impactsthat tourist activities haveon them. This study explores the impact of divers and snorkelerson the reefs of St. Lucia, West Indies, and how the reef environmentaffects tourists' perceptionsand experiencesof them. Observationsof divers and snorkelersrevealed that their impact on the reefs followed certainpatterns and could be predictedfrom individuals', site and dive characteristics.Camera use, night diving and shorediving were correlatedwith higher levels of diver damage.Briefings by dive leadersalone did not reducetourist contactswith the reef but interventiondid. Interviewswith tourists revealedthat many choseto visit St. Lucia becauseof its marineprotected area. Certain site attributes,especially marine life, affectedtourists' experiencesand overall enjoyment of reefs.Tourists were not alwaysable to correctly ascertainabundance of marine life or sedimentpollution but they were sensitiveto, and disliked seeingdamaged coral, poor underwatervisibility, garbageand other tourists damagingthe reef. Some tourists found sitesto be -
Towards a Panbiogeography of the Seas
Biological Journal of the Linnean Society, 2005, 84, 675-723. Towards a panbiogeography of the seas MICHAEL HEADS* Biology Department, University of the South Pacific, PO Box 1168, Suva, Fiji Islands Received 6 October 2003; accepted for publication 28 June 2004 A contrast is drawn between the concept of spéciation favoured in the Darwin-Wallace biogeographic paradigm (founder dispersal from a centre of origin) and in panbiogeography (vicariance or allopatry). Ordinary ecological dis persal is distinguished from founder dispersal. A survey of recent literature indicates that ideas on many aspects of marine biology are converging on a panbiogeographic view. Panbiogeographic conclusions supported in recent work include the following observations: fossils give minimum ages for groups and most taxa are considerably older than their earliest known fossil; Pacific/Atlantic divergence calibrations based on the rise of the Isthmus of Panama at 3 Ma are flawed; for these two reasons most molecular clock calibrations for marine groups are also flawed; the means of dispersal of taxa do not correlate with their actual distributions; populations of marine species may be closed systems because of self-recruitment; most marine taxa show at least some degree of vicariant differentiation and vicariance is surprisingly common among what were previously assumed to be uniform, widespread taxa; man grove and seagrass biogeography and migration patterns in marine taxa are best explained by vicariance; the Indian Ocean and the Pacific Ocean represent major -
The Biogeography of Large Islands, Or How Does the Size of the Ecological Theater Affect the Evolutionary Play
The biogeography of large islands, or how does the size of the ecological theater affect the evolutionary play Egbert Giles Leigh, Annette Hladik, Claude Marcel Hladik, Alison Jolly To cite this version: Egbert Giles Leigh, Annette Hladik, Claude Marcel Hladik, Alison Jolly. The biogeography of large islands, or how does the size of the ecological theater affect the evolutionary play. Revue d’Ecologie, Terre et Vie, Société nationale de protection de la nature, 2007, 62, pp.105-168. hal-00283373 HAL Id: hal-00283373 https://hal.archives-ouvertes.fr/hal-00283373 Submitted on 14 Dec 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THE BIOGEOGRAPHY OF LARGE ISLANDS, OR HOW DOES THE SIZE OF THE ECOLOGICAL THEATER AFFECT THE EVOLUTIONARY PLAY? Egbert Giles LEIGH, Jr.1, Annette HLADIK2, Claude Marcel HLADIK2 & Alison JOLLY3 RÉSUMÉ. — La biogéographie des grandes îles, ou comment la taille de la scène écologique infl uence- t-elle le jeu de l’évolution ? — Nous présentons une approche comparative des particularités de l’évolution dans des milieux insulaires de différentes surfaces, allant de la taille de l’île de La Réunion à celle de l’Amé- rique du Sud au Pliocène. -
Crustaceans Topics in Biodiversity
Topics in Biodiversity The Encyclopedia of Life is an unprecedented effort to gather scientific knowledge about all life on earth- multimedia, information, facts, and more. Learn more at eol.org. Crustaceans Authors: Simone Nunes Brandão, Zoologisches Museum Hamburg Jen Hammock, National Museum of Natural History, Smithsonian Institution Frank Ferrari, National Museum of Natural History, Smithsonian Institution Photo credit: Blue Crab (Callinectes sapidus) by Jeremy Thorpe, Flickr: EOL Images. CC BY-NC-SA Defining the crustacean The Latin root, crustaceus, "having a crust or shell," really doesn’t entirely narrow it down to crustaceans. They belong to the phylum Arthropoda, as do insects, arachnids, and many other groups; all arthropods have hard exoskeletons or shells, segmented bodies, and jointed limbs. Crustaceans are usually distinguishable from the other arthropods in several important ways, chiefly: Biramous appendages. Most crustaceans have appendages or limbs that are split into two, usually segmented, branches. Both branches originate on the same proximal segment. Larvae. Early in development, most crustaceans go through a series of larval stages, the first being the nauplius larva, in which only a few limbs are present, near the front on the body; crustaceans add their more posterior limbs as they grow and develop further. The nauplius larva is unique to Crustacea. Eyes. The early larval stages of crustaceans have a single, simple, median eye composed of three similar, closely opposed parts. This larval eye, or “naupliar eye,” often disappears later in development, but on some crustaceans (e.g., the branchiopod Triops) it is retained even after the adult compound eyes have developed. In all copepod crustaceans, this larval eye is retained throughout their development as the 1 only eye, although the three similar parts may separate and each become associated with their own cuticular lens.