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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
AMPHIPODA Sheet 103 SUB-ORDER: HYPERIIDEA Family: Hyperiidae (BY M
CONSEIL INTERNATIONAL POUR L’EXPLORATION DE LA MER Zooplankton AMPHIPODA Sheet 103 SUB-ORDER: HYPERIIDEA Family: Hyperiidae (BY M. J. DUNBAR) 1963 https://doi.org/10.17895/ices.pub.4917 -2- 1. Hyperia galba, 9;a, per. 1; b, per. 2. - 2. Hyperia medusarum, 9;a, per. 1 ; b, per. 2. - 3. Hyperoche rnedusarum, 8; a, per. 1 ; b, per. 2. - 4. Parathemisto abyssorum, Q; a, per. 3; b, uropods. - 5. Para- themisto gauchicaudi (“short-legged” form), 9; a, per. 3; b, uropods; c, per. 5. - 6. Parathemisto libellula, Q; a, per. 3; b, uropods; c, per. 5. - 7. Parathemisto gracilipes, (first antenna not drawn in full); a, per. 5; b, uropods 3. (Figures 7, 7a and 7b redrawn from HURLEY;Figure 6c original; remainder drawn from SARS.) The limbs of the peraeon, or peraeopods, are here numbered in series from 1 to 7, numbers 1 and 2 being also called “gnathopods”; “per.” = peraeopod. Only the species of the northern part of the North Atlantic are treated here; the Mediterranean species are omitted. The family is still in need of revision. Family Hyperiidae Key to the genera:- la. Per. 5-7 considerably longer than per. 3 and 4. ........................................................ Parathemisto Boeck lb. Per. 5 and 6 longer than 3 and 4; per. 7 much shorter than 5 and 6 ..................Hyperioides longipes Chevreux (not figured) lc. Per. 5-7 not longer than 3 and 4 ....................................................................................... 2 2a. Per. 1 and 2, the fixed finger (onjoint 5) of thechelanot shorter than the movable finger (joint 6). ...Hyperoche medusarum (Kroyer) (Fig. 3) 2b. Per. -
Coastal and Marine Ecological Classification Standard (2012)
FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard Marine and Coastal Spatial Data Subcommittee Federal Geographic Data Committee June, 2012 Federal Geographic Data Committee FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard, June 2012 ______________________________________________________________________________________ CONTENTS PAGE 1. Introduction ..................................................................................................................... 1 1.1 Objectives ................................................................................................................ 1 1.2 Need ......................................................................................................................... 2 1.3 Scope ........................................................................................................................ 2 1.4 Application ............................................................................................................... 3 1.5 Relationship to Previous FGDC Standards .............................................................. 4 1.6 Development Procedures ......................................................................................... 5 1.7 Guiding Principles ................................................................................................... 7 1.7.1 Build a Scientifically Sound Ecological Classification .................................... 7 1.7.2 Meet the Needs of a Wide Range of Users ...................................................... -
Additions to and Revisions of the Amphipod (Crustacea: Amphipoda) Fauna of South Africa, with a List of Currently Known Species from the Region
Additions to and revisions of the amphipod (Crustacea: Amphipoda) fauna of South Africa, with a list of currently known species from the region Rebecca Milne Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa & Charles L. Griffiths* Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa E-mail: [email protected] (with 13 figures) Received 25 June 2013. Accepted 23 August 2013 Three species of marine Amphipoda, Peramphithoe africana, Varohios serratus and Ceradocus isimangaliso, are described as new to science and an additional 13 species are recorded from South Africa for the first time. Twelve of these new records originate from collecting expeditions to Sodwana Bay in northern KwaZulu-Natal, while one is an introduced species newly recorded from Simon’s Town Harbour. In addition, we collate all additions and revisions to the regional amphipod fauna that have taken place since the last major monographs of each group and produce a comprehensive, updated faunal list for the region. A total of 483 amphipod species are currently recognized from continental South Africa and its Exclusive Economic Zone . Of these, 35 are restricted to freshwater habitats, seven are terrestrial forms, and the remainder either marine or estuarine. The fauna includes 117 members of the suborder Corophiidea, 260 of the suborder Gammaridea, 105 of the suborder Hyperiidea and a single described representative of the suborder Ingolfiellidea. -
Guzik IS07040.Qxd
CSIRO PUBLISHING www.publish.csiro.au/journals/is Invertebrate Systematics, 2008, 22, 205–216 Phylogeography of the ancient Parabathynellidae (Crustacea:Bathynellacea) from the Yilgarn region of Western Australia M. T. Guzik A,E, K. M. Abrams A, S. J. B. Cooper A,B, W. F. HumphreysC, J.-L. ChoD and A. D. Austin A AAustralian Centre for Evolutionary Biology and Biodiversity, School of Earth and Environmental Sciences, The University of Adelaide, SA 5005, Australia. BEvolutionary Biology Unit, South Australian Museum, North Terrace, Adelaide, SA 5000, Australia. CWestern Australian Museum, Locked Bag 49, Welshpool DC, WA 6986, Australia. DInternational Drinking Water Center, San 6-2, Yeonchuck-Dong, Daedok-Gu, Taejeon 306-711, Korea. ECorresponding author. Email: [email protected] Abstract. The crustacean order Bathynellacea is a primitive group of subterranean aquatic (stygobitic) invertebrates that typically inhabits freshwater interstitial spaces in alluvia. A striking diversity of species from the bathynellacean family Parabathynellidae have been found in the calcretes of the Yilgarn palaeodrainage system in Western Australia. Taxonomic studies show that most species are restricted in their distribution to a single calcrete, which is consistent with the findings of other phylogeographic studies of stygofauna. In this, the first molecular phylogenetic and phylogeographic study of interspecific relationships among parabathynellids, we aimed to explore the hypothesis that species are short-range endemics and restricted to single calcretes, and to investigate whether there were previously unidentified cryptic species. Analyses of sequence data based on a region of the mitochondrial (mt) DNA cytochrome c oxidase 1 gene showed the existence of divergent mtDNA lineages and species restricted in their distribution to a single calcrete, in support of the broader hypothesis that these calcretes are equivalent to closed island habitats comprising endemic taxa. -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Redalyc.Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae)
Revista de Biología Tropical ISSN: 0034-7744 [email protected] Universidad de Costa Rica Costa Rica Bunkley-Williams, Lucy; Williams, Jr., Ernest H.; Bashirullah, Abul K.M. Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii) Revista de Biología Tropical, vol. 54, núm. 3, diciembre, 2006, pp. 175-188 Universidad de Costa Rica San Pedro de Montes de Oca, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44920193024 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii) Lucy Bunkley-Williams,1 Ernest H. Williams, Jr.2 & Abul K.M. Bashirullah3 1 Caribbean Aquatic Animal Health Project, Department of Biology, University of Puerto Rico, P.O. Box 9012, Mayagüez, PR 00861, USA; [email protected] 2 Department of Marine Sciences, University of Puerto Rico, P.O. Box 908, Lajas, Puerto Rico 00667, USA; ewil- [email protected] 3 Instituto Oceanografico de Venezuela, Universidad de Oriente, Cumaná, Venezuela. Author for Correspondence: LBW, address as above. Telephone: 1 (787) 832-4040 x 3900 or 265-3837 (Administrative Office), x 3936, 3937 (Research Labs), x 3929 (Office); Fax: 1-787-834-3673; [email protected] Received 01-VI-2006. Corrected 02-X-2006. Accepted 13-X-2006. Abstract: The parasitic isopod fauna of fishes in the southern Caribbean is poorly known. In examinations of 12 639 specimens of 187 species of Venezuelan fishes, the authors found 10 species in three families of isopods (Gnathiids, Gnathia spp. -
Syntopy in Rare Marine Interstitial Crustaceans (Amphipoda, Ingolfiellidae) from Small Coral Islands in the Molucca Sea, Indonesia
Mar Biodiv (2014) 44:163–172 DOI 10.1007/s12526-013-0193-0 ORIGINAL PAPER Syntopy in rare marine interstitial crustaceans (Amphipoda, Ingolfiellidae) from small coral islands in the Molucca Sea, Indonesia Ronald Vonk & Damià Jaume Received: 9 August 2013 /Revised: 19 November 2013 /Accepted: 19 November 2013 /Published online: 10 December 2013 # Senckenberg Gesellschaft für Naturforschung and Springer-Verlag Berlin Heidelberg 2013 Abstract Ingolfiella botoi, a new species of ingolfiellid am- (Stock 1979; Vonk and Schram 2003). Since their discovery phipod, is described in syntopy with the recently described in the frame of the deep-sea Danish ‘Ingolf’ expedition of I. moluccensis from the coarse coral sand interstitial medium 1895-1896 (Hansen 1903), only 48 species—most of them of the Gura Ici Islands (Molucca Sea, Indonesia). The new known from a single or very few specimens—have been taxon is unique among ingolfiellideans in the display of a described (Griffiths 1989, 1991; Vonk and Jaume 2013; multidenticulate unguis on P5–P6. The new species shares Iannilli and Vonk 2013). Locations rendering specimens are most character state resemblances with I. quadridentata Stock often placed widely apart and mainly in the tropics and sub- 1979, from coarse sublittoral sands up to 4 m depth in Curaçao tropics, mostly in interstitial or cave waters. Species ranges are (Leeward Antilles). This is the third record of syntopy among usually stated as reduced except in some cases where large members of this elusive group of stygobiont amphipods. areas have been methodically surveyed. Examples of species with presumed larger ranges than just pinpoint locations in- Keywords Ingolfiella botoi n. -
Title CUMACEAN CRUSTACEA from AKKESHI BAY, HOKKAIDO Author(S) Gamo, Sigeo Citation PUBLICATIONS of the SETO MARINE BIOLOGICAL LA
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kyoto University Research Information Repository CUMACEAN CRUSTACEA FROM AKKESHI BAY, Title HOKKAIDO Author(s) Gamo, Sigeo PUBLICATIONS OF THE SETO MARINE BIOLOGICAL Citation LABORATORY (1965), 13(3): 187-219 Issue Date 1965-10-30 URL http://hdl.handle.net/2433/175407 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University 1 CUMACEAN CRUSTACEA FROM AKKESHI BAY, HOKKAID0 ) SIGEO GAMO Faculty of Liberal Arts and Education, Yokohama National University, Kamakura, Kanagawa-Ken With 12 Text-figures Our knowledge of the Cumacea of Hokkaido and its adjacent waters is due to the contributions of DERZHA VIN (1923, 1926), U:ENo (1933, 1936), ZIMMER (1929, 1939, 1940, 1943) and LOMAKINA (1955 a-b; 1958 a-b). + Tomata Sempoji krn Fig. 1. Map of Akkeshi Bay. Solid circles with numbers indicate the stations where the cumaceans were collected by the Ekman-Berge bottom-sampling grab, 19-21 show the places where the subsurface towing of plankton-net was made at night. "~---------- ---- ---"---~- 1) Contributions from the Akkeshi Marine Biological Station, No. 126. Publ. Seto Mar. Biol. Lab., XIII (3), 187-219, 1965. (Article 10) f-l ~ Table 1. Occurrence of cumaceans in Akkeshi Bay. Station number 1_1_ _:__3___ 4 ___ 5 ___ 6 ___7 ___8_1_9_ 10 11-12~_::_~~~~ 18 19120121 Depth (m) 2 1 3 8 2 0.3 9 11 11 14 8-12 6 13 14 15 0.3 0.3 night ______B_o_t_t-om_c_h-aracter ~~~~~sis~~~~ sM s andMI s ~s~ss ~~~~~~ Srecies of cumaceans Bodotriidae I I I I I I I I I I I I I I I I . -
TNP SOK 2011 Internet
GARDEN ROUTE NATIONAL PARK : THE TSITSIKAMMA SANP ARKS SECTION STATE OF KNOWLEDGE Contributors: N. Hanekom 1, R.M. Randall 1, D. Bower, A. Riley 2 and N. Kruger 1 1 SANParks Scientific Services, Garden Route (Rondevlei Office), PO Box 176, Sedgefield, 6573 2 Knysna National Lakes Area, P.O. Box 314, Knysna, 6570 Most recent update: 10 May 2012 Disclaimer This report has been produced by SANParks to summarise information available on a specific conservation area. Production of the report, in either hard copy or electronic format, does not signify that: the referenced information necessarily reflect the views and policies of SANParks; the referenced information is either correct or accurate; SANParks retains copies of the referenced documents; SANParks will provide second parties with copies of the referenced documents. This standpoint has the premise that (i) reproduction of copywrited material is illegal, (ii) copying of unpublished reports and data produced by an external scientist without the author’s permission is unethical, and (iii) dissemination of unreviewed data or draft documentation is potentially misleading and hence illogical. This report should be cited as: Hanekom N., Randall R.M., Bower, D., Riley, A. & Kruger, N. 2012. Garden Route National Park: The Tsitsikamma Section – State of Knowledge. South African National Parks. TABLE OF CONTENTS 1. INTRODUCTION ...............................................................................................................2 2. ACCOUNT OF AREA........................................................................................................2 -
A Survey of Gill and Digestive System Parasites of Brownbanded Bambooshark Chiloscyllium Punctatum from the Gulf of Thailand
A Survey of Gill and Digestive System Parasites of BrownBanded Bambooshark Chiloscyllium punctatum from the Gulf of Thailand Wiriya Chaiyaroj Faculty of Fisheries, Kasetsart University Abstract The species of benthic shark, BrownBanded Bambooshark (Chiloscyllium punctatum) were collected from Exclusive Economic Zone of the Gulf of Thailand. Fish samples were examined both of external and internal parasite. 15 samples of sharks found only 12 sharks that infected with parasites. Two family of endoparasites, family Onchobothrithriidae and family Phyllobothriidae of phylum platyhelminthes were found highest prevalence and mean intensity at gastrointestinal especially at the intestine that unidentified. Three genus of ectoparasites, Eudactylina Gnathia and Caligus were found at the gill area. They had prevalence and mean intensity follow by intestine and that also unidentified species. Introduction Brownbanded Bambooshark (Chiloscyllium punctatum) is the small benthic shark in family Hemiscyllidae and distributed mainly in Southeast Asian water. This species taken in inshore fisheries in Thailand and utilized for human food. Nowadays, their status recognized as “Near Threaten” (Tassapon et al., 2560) The Gulf of Thailand looks like a basin that is an area of sediment from several rivers makes seabed like mud and sand are spread everywhere. (Department of Marine and Coastal Resources, 2013) and benthic sharks are located in the sand or sand along the coast. (Tassapon et al., 2560). In the Gulf of Thailand, the genus of benthic sharks Chiloscyllium, there are 5 species. Chiloscyllium punctatum is the most abundant species in this genus and found in this cruise of M.V.SEAFDEC 2. (Tassanee et al., 2560) that caught by the trawl. -
Crustacea, Malacostraca)*
SCI. MAR., 63 (Supl. 1): 261-274 SCIENTIA MARINA 1999 MAGELLAN-ANTARCTIC: ECOSYSTEMS THAT DRIFTED APART. W.E. ARNTZ and C. RÍOS (eds.) On the origin and evolution of Antarctic Peracarida (Crustacea, Malacostraca)* ANGELIKA BRANDT Zoological Institute and Zoological Museum, Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany Dedicated to Jürgen Sieg, who silently died in 1996. He inspired this research with his important account of the zoogeography of the Antarctic Tanaidacea. SUMMARY: The early separation of Gondwana and the subsequent isolation of Antarctica caused a long evolutionary his- tory of its fauna. Both, long environmental stability over millions of years and habitat heterogeneity, due to an abundance of sessile suspension feeders on the continental shelf, favoured evolutionary processes of “preadapted“ taxa, like for exam- ple the Peracarida. This taxon performs brood protection and this might be one of the most important reasons why it is very successful (i.e. abundant and diverse) in most terrestrial and aquatic environments, with some species even occupying deserts. The extinction of many decapod crustaceans in the Cenozoic might have allowed the Peracarida to find and use free ecological niches. Therefore the palaeogeographic, palaeoclimatologic, and palaeo-hydrographic changes since the Palaeocene (at least since about 60 Ma ago) and the evolutionary success of some peracarid taxa (e.g. Amphipoda, Isopo- da) led to the evolution of many endemic species in the Antarctic. Based on a phylogenetic analysis of the Antarctic Tanaidacea, Sieg (1988) demonstrated that the tanaid fauna of the Antarctic is mainly represented by phylogenetically younger taxa, and data from other crustacean taxa led Sieg (1988) to conclude that the recent Antarctic crustacean fauna must be comparatively young.