The Lichen Genus Ochrolechia in Poland II
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Additions to the Lichenized Order Pertusariales (Lichenized Ascomycetes) in Pakistan
Nova Hedwigia, Vol. 111 (2020), Issue 1-2, 219–229 Article Stuttgart, August 2020 Additions to the lichenized order Pertusariales (lichenized Ascomycetes) in Pakistan Kamran Habib1*, Rizwana Zulfiqar1, Abdul Nasir Khalid1 1 Fungal Biology and Systematics Lab, Department of Botany, University of the Punjab, Lahore, Pakistan * Corresponding author: [email protected] With 4 figures Abstract: We report three species of Pertusariales (lichenized Ascomycota) from Pakistan. Per- tusaria australis (Pertusariaceae) and Varicellaria hemisphaerica (Ochrolechiaceae) are reported for the first time from Pakistan, while Lepra albescens (Pertusariaceae) is reported for the second time only. The taxonomic characters of each species are given, along with an ITS-based phyloge- netic analysis and notes on ecology and distribution. Pertusaria australis is here being redescribed for the first time after its first description in 1888. Key words: Azad Jammu Kashmir; Neelam Valley; phylogeny; taxonomy Introduction Pertusariales M.Choisy ex D.Hawksw. & O.E.Erikss is a medium-sized order, comprising 24 genera and 907 species of predominantly crustose to subfruticose lichens in six fami- lies (Schmitt et al. 2006, Lücking et al. 2017). The order has a worldwide distribution, occurring in all major ecosystems, colonising bark, wood, rock or soil, or overgrowing bryophytes and other small plants. Its species are characterized by disciform to poriform apothecia, thick-walled asci and generally large ascospores (Schmitt et al. 2006). The chemical composition is diverse, representing different biochemical substance classes which together with the morphological characteristics and anatomical, supporting the delimitation of many taxa, making secondary chemistry an important identification tool (Dibben 1980, Hanko 1983, Hanko et al. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
New Records of <I>Ochrolechia</I> and <I>Placopsis
ISSN (print) 0093-4666 © 2012. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/122.461 Volume 122, pp. 461–466 October–December 2012 New records of Ochrolechia and Placopsis from the Hengduan Mountains, China Tong-li Gao & Qiang Ren* College of Life Science, Shandong Normal University, Jinan, 250014, China *Correspondence to: [email protected] Abstract—Based on specimens collected in the Hengduan Mountains, Ochrolechia laevigata is recorded as new to Asia, O. africana as new to China, and Placopsis gelida as new to mainland China. Key words — Ochrolechiaceae, Trapeliaceae, taxonomy, Yunnan Introduction Ochrolechia A. Massal. (Ochrolechiaceae, Pertusariales, Ascomycota), a widespread genus of crustose lichens, comprises about 60 species worldwide (Verseghy 1962; Howard 1970; Brodo 1987, 1991; Lumbsch et al. 2003; Kirk et al. 2008; Kukwa 2009, 2011). In China, 25 species have been reported (Wei 1991, Jia & Zhao 2003, Jia et al. 2008), of which 18 are known from Southwest China. During our study of lichens collected from the Hengduan Mountains, we recorded O. africana for the first time from China and O. laevigata for the first time from Asia. We also collected in the same area Placopsis gelida, reported here as new to mainland China. Materials & methods The specimens studied are preserved in SDNU (Lichen Section of Botanical Herbarium, Shandong Normal University). The morphological and anatomical characters of the specimens were examined under a stereomicroscope (Olympus SZ) and a polarizing microscope (Olympus CX21). The lichen substances were identified using the standardized thin layer chromatography techniques (TLC) with C system (Orange et al. 2010) and mercury cadmium telluride [MCT] crystal analysis. -
Diversity and Distribution of Epiphytic Lichens on Cedrus Atlantica and Quercus Faginea in Mount Babor Forest, Algeria
BIODIVERSITAS ISSN: 1412-033X Volume 22, Number 2, February 2021 E-ISSN: 2085-4722 Pages: 887-899 DOI: 10.13057/biodiv/d220244 Diversity and distribution of epiphytic lichens on Cedrus atlantica and Quercus faginea in Mount Babor Forest, Algeria AMINA BELGUIDOUM, TAKIA LOGRADA, MESSAOUD RAMDANI Laboratory for Valorization of Natural Biological Resources, SNV Faculty, Ferhat Abbas University Setif-1. El Bez, Setif 19000, Algeria. Tel.: +213-658-101010, email: [email protected] Manuscript received: 10 January 2020. Revision accepted: 19 January 2021. Abstract. Belguidoum A, Lograda T, Ramdani M. 2021. Diversity and distribution of epiphytic lichens on Cedrus atlantica and Quercus faginea in Mount Babor Forest, Algeria. Biodiversitas 22: 887-899. Information about lichen diversity in Algeria is limited despite their important role as biological indicators of ecosystem health. The aim of the study was to carry out an inventory of epiphytic lichens in the Mount Babor Forest on two types of phorophytes (host trees), i.e., Cedrus atlantica and Quercus faginea, in varying altitudinal gradients and the diameter of host tree. The similarity of the sampled sites was assessed by the Sorensen index (β). Sixty-six species of epiphytic lichens were identified, which belong to 24 families and 38 genera. C. atlantica hosted a higher number of species than Q. faginea. The majority of lichen on C. atlantica belonged to the Parmeliaceae family, whereas those on Q. faginea belonged to the Physciaceae family. Crustose and foliose lichens were the most common species in the study area. The results showed the existence of a distinct relationship between the parameters of the distribution (i.e., tree diameter, elevation) and the specific lichen richness. -
Taxonomy and Phylogeny of the Manna Lichens and Allied
View metadata, citation and similar papers at core.ac.uk University ofbrought Helsinki to you by CORE Faculty of Biological and Environmentalprovided by Helsingin yliopiston Sciences digitaalinen arkisto Publications in Botany from the University of Helsinki No: 43 Taxonomy and phylogeny of the ‘manna lichens’ and allied species (Megasporaceae) Mohammad Sohrabi Helsinki 2011 Department of Biosciences Faculty of Biological and Environmental Sciences University of Helsinki Finland Botanical Museum Finnish Museum of Natural History University of Helsinki Finland ACADEMIC DISSERTATION To be presented for public examination with the permission of the Faculty of Biological and Environmental Sciences of the University of Helsinki, in the lecture room (Nylander-sali) of the Botanical Museum, Unioninkatu 44, on January 27th 2012, at 12 noon. Helsinki 2011 Author’s address Botanical Museum, Finnish Museum of Natural History P.O. Box 7, FI–00014 University of Helsinki, Finland. Department of Plant Science, University of Tabriz, 51666 Tabriz, Iran. Email: [email protected], [email protected] Supervisors Prof. Jaakko Hyvönen Prof. Soili Stenroos University of Helsinki, Finland University of Helsinki, Finland Pre-examiners Prof. Thorsten Lumbsch Dr. Christian Printzen Field Museum of Natural History, Chicago, Senckenberg Research Institute and Natural Illinois, USA History Museum, Frankfurt, Germany Opponent Prof. Helmut Mayrhofer University of Graz, Austria Custos Prof. Heikki Hänninen University of Helsinki, Finland ISSN 1238-4577 ISBN 978-952-10-7399-1 (paperback) ISBN 978-952-10-7400-4 (PDF) http://ethesis.helsinki.fi Layout: Mohammad Sohrabi Cover photo: The three vagrant species, Circinaria fruticulosa, C. gyrosa,andC. hispida, growing at the same spot: Iran, East Azerbaijan province. -
Revisions of British and Irish Lichens
Revisions of British and Irish Lichens Volume 5 January 2021 Pertusariales: Ochrolechiaceae Cover image: Ochrolechia androgyna, on bark of Quercus petraea, Rydal Park, Westmorland. Revisions of British and Irish Lichens is a free-to-access serial publication under the auspices of the British Lichen Society, that charts changes in our understanding of the lichens and lichenicolous fungi of Great Britain and Ireland. Each volume will be devoted to a particular family (or group of families), and will include descriptions, keys, habitat and distribution data for all the species included. The maps are based on information from the BLS Lichen Database, that also includes data from the historical Mapping Scheme and the Lichen Ireland database. The choice of subject for each volume will depend on the extent of changes in classification for the families concerned, and the number of newly recognized species since previous treatments. To date, accounts of lichens from our region have been published in book form. However, the time taken to compile new printed editions of the entire lichen biota of Britain and Ireland is extensive, and many parts are out-of-date even as they are published. Issuing updates as a serial electronic publication means that important changes in understanding of our lichens can be made available with a shorter delay. The accounts may also be compiled at intervals into complete printed accounts, as new editions of the Lichens of Great Britain and Ireland. Editorial Board Dr P.F. Cannon (Department of Taxonomy & Biodiversity, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK). Dr A. Aptroot (Laboratório de Botânica/Liquenologia, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Avenida Costa e Silva s/n, Bairro Universitário, CEP 79070-900, Campo Grande, MS, Brazil) Dr B.J. -
Skullbone Plains Tasmania 26 February–2 March 2012 What Is Contents Bush Blitz?
BUSH BLITZ SPECIES DISCOVERY PROGRAM Skullbone Plains Tasmania 26 February–2 March 2012 What is Contents Bush Blitz? What is Bush Blitz? 2 Bush Blitz is a Summary 3 multi-million dollar Abbreviations 3 partnership between the Introduction 4 Australian Government, BHP Billiton and Earthwatch Reserve Overview 5 Australia to document plants Methods 6 and animals in selected Results 10 properties across Australia’s Discussion 13 National Reserve System. Appendix A: Species Lists 21 Fauna 22 Vertebrates 22 This innovative partnership Invertebrates 26 harnesses the expertise of many Flora 30 of Australia’s top scientists from Appendix B: Threatened Species 41 museums, herbaria, universities, Fauna 42 and other institutions and Vertebrates 42 organisations across the country. Flora 43 Appendix C: Exotic and Pest Species 45 Fauna 46 Vertebrates 46 Invertebrates 46 Flora 47 Glossary 49 2 Bush Blitz survey report Summary A six-day Bush Blitz survey was conducted on Skullbone Plains reserve, Tasmania, during Abbreviations February and March of 2012. In total 635 species were identified, of which 520 had not been previously recorded on the reserve. Of the species recorded, 19 are putative species new to science, ANBG comprising one moth, seven spiders, one true bug Australian National Botanic Gardens and 10 lichens. DPIPWE Tasmanian Department of Primary Industries, The Tasmanian Devil (Sarcophilus harrisii) and Parks, Water and Environment Tasmanian Wedge-tailed Eagle (Aquila audax fleayi) EPBC Act were recorded. Both are listed as endangered Environment Protection and Biodiversity under the Commonwealth Environment Protection Conservation Act 1999 (Commonwealth) and Biodiversity Conservation Act 1999 (EPBC Act) NRS and the Tasmanian Threatened Species Protection National Reserve System Act 1995 (TSP Act). -
Divergence and Ranking of Taxa Across the Kingdoms Animalia, Fungi and Plantae
Mycosphere 7 (11): 1678–1689 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/7/11/5 Copyright © Guizhou Academy of Agricultural Sciences Divergence and ranking of taxa across the kingdoms Animalia, Fungi and Plantae Samarakoon MC1,2,3, Hyde KD 1,3, Promputtha I2, Ariyawansa HA4, Hongsanan S1* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand 3Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China 4Guizhou Academy of Sciences, Guiyang, 550009, Guizhou Province, China Samarakoon MC, Hyde KD, Promputtha I, Ariyawansa HA, Hongsanan S. 2016 – Divergence and ranking of taxa across the kingdoms Animalia, Fungi and Plantae. Mycosphere 7(11), 1678–1689, Doi 10.5943/mycosphere/7/11/5 Abstract In science, species are grouped and ranked in kingdoms, phyla, classes, orders, families and genera and several other intermediate taxa, in a taxonomic hierarchy. However, the ranking of phyla, classes, orders and families across kingdoms is not linked and there is unlikely to be any correlation between these ranks in animals, fungi or plants. In a few recent studies, divergence times have been used to develop more natural groupings within ranks and it has been suggested that divergence times should be used as a universal criterion in high level ranking. It would therefore be desirable to develop more stable and standardized grouping of taxa in phyla, classes, orders and families across the kingdoms using divergence times.