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Part I. an Annotated Checklist of Extant Brachyuran Crabs of the World
THE RAFFLES BULLETIN OF ZOOLOGY 2008 17: 1–286 Date of Publication: 31 Jan.2008 © National University of Singapore SYSTEMA BRACHYURORUM: PART I. AN ANNOTATED CHECKLIST OF EXTANT BRACHYURAN CRABS OF THE WORLD Peter K. L. Ng Raffles Museum of Biodiversity Research, Department of Biological Sciences, National University of Singapore, Kent Ridge, Singapore 119260, Republic of Singapore Email: [email protected] Danièle Guinot Muséum national d'Histoire naturelle, Département Milieux et peuplements aquatiques, 61 rue Buffon, 75005 Paris, France Email: [email protected] Peter J. F. Davie Queensland Museum, PO Box 3300, South Brisbane, Queensland, Australia Email: [email protected] ABSTRACT. – An annotated checklist of the extant brachyuran crabs of the world is presented for the first time. Over 10,500 names are treated including 6,793 valid species and subspecies (with 1,907 primary synonyms), 1,271 genera and subgenera (with 393 primary synonyms), 93 families and 38 superfamilies. Nomenclatural and taxonomic problems are reviewed in detail, and many resolved. Detailed notes and references are provided where necessary. The constitution of a large number of families and superfamilies is discussed in detail, with the positions of some taxa rearranged in an attempt to form a stable base for future taxonomic studies. This is the first time the nomenclature of any large group of decapod crustaceans has been examined in such detail. KEY WORDS. – Annotated checklist, crabs of the world, Brachyura, systematics, nomenclature. CONTENTS Preamble .................................................................................. 3 Family Cymonomidae .......................................... 32 Caveats and acknowledgements ............................................... 5 Family Phyllotymolinidae .................................... 32 Introduction .............................................................................. 6 Superfamily DROMIOIDEA ..................................... 33 The higher classification of the Brachyura ........................ -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
BEHAVIOURAL RESPONSE of NORTHERN BASKET STAR GORGONOCEPHALUS ARCTICUS to MECHANICAL STIMULATIONS J.-F Hamel, a Mercier
BEHAVIOURAL RESPONSE OF NORTHERN BASKET STAR GORGONOCEPHALUS ARCTICUS TO MECHANICAL STIMULATIONS J.-F Hamel, A Mercier To cite this version: J.-F Hamel, A Mercier. BEHAVIOURAL RESPONSE OF NORTHERN BASKET STAR GOR- GONOCEPHALUS ARCTICUS TO MECHANICAL STIMULATIONS. Vie et Milieu / Life & En- vironment, Observatoire Océanologique - Laboratoire Arago, 1993, pp.197-203. hal-03045834 HAL Id: hal-03045834 https://hal.sorbonne-universite.fr/hal-03045834 Submitted on 8 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. VIE MILIEU, 1993, 43 (4): 197-203 BEHAVIOURAL RESPONSE OF NORTHERN BASKET STAR GORGONOCEPHALUS ARCTICUS TO MECHANICAL STIMULATIONS J.-F. HAMEL and A. MERCIER Département d'océanographie, Université du Québec à Rimouski, Centre Océanographique de Rimouski, 310 allée des Ursulines, Rimouski (Québec), Canada G5L 3A1 GORGONOCEPHALUS RÉSUME - L'Ophiure ramifiée Gorgonocephalus arcticus, retrouvée dans les eaux OPHIURE profondes de l'estuaire du Saint-Laurent, montre une capacité de discrimination COMPORTEMENT tactile qui lui permet de répondre proportionnellement à diverses intensités de sti- MECANO-SENSIBILITE mulation. Une stimulation ponctuelle du disque provoque l'enroulement général des bras et la couverture du disque par les radii. Une comparaison de la vitesse du mouvement des bras, induite par différents niveaux de stimulation, montre que G. -
A Literature Review of the Ophiuroidea (Echinodermata) from the Pacific Coast of Mexico
A literature review of the Ophiuroidea (Echinodermata) from the Pacific coast of Mexico Rebeca Granja-Fernández1, María Dinorah Herrero-Pérezrul2, Andrés López-Pérez3, Alejandro Hernández-Morales4 & Pedro Diego Rangel-Solís3 1. Doctorado en Ciencias Biológicas y de la Salud. Universidad Autónoma Metropolitana. San Rafael Atlixco 186, Col. Vicentina. CP 09340. D.F., México; [email protected] 2. Centro Interdisciplinario de Ciencias Marinas-Instituto Politécnico Nacional. Depto. de Pesquerías y Biología Marina. Avenida Instituto Politécnico Nacional s/n. Col. Playa Palo de Santa Rita. C.P. 23096. La Paz, Baja California Sur, México; [email protected] 3. Departamento de Hidrobiología, División CBS, UAM-Iztapalapa. Av. San Rafael Atlixco 186, Col. Vicentina, CP 09340, AP 55-535. D.F., México; [email protected], [email protected] 4. Programa de Licenciatura en Ecología Marina, Laboratorio de Ecología Cuantitativa, Universidad Autónoma de Guerrero. Av. Gran Vía Tropical 20, Fraccionamiento Las Playas, CP 39390. Acapulco, Guerrero, México; [email protected] Received 30-V-2014. Corrected 03-X-2014. Accepted 17-XI-2014. Abstract: Despite the important effort of knowing the Ophiuroidea diversity in the Mexican Pacific, some mis- takes in the taxonomic nomenclature have pervaded through time. In order to clarify the latter, a checklist based on literature review of brittle stars from the Mexican Pacific is provided. We reviewed a total of 105 references that in total summarized 125 species of brittle stars from the Mexican Pacific (112) and the Gulf of California (97), belonging to two orders, 16 families and 50 genera. These records are higher than those reported on previ- ous studies carried out in the area. -
Open Ocean Intake Effects Study
City of Santa Cruz Water Department & Soquel Creek Water District scwd2 Desalination Program Open Ocean Intake Effects Study December 2010 Submitted to: Ms. Heidi Luckenbach City of Santa Cruz 212 Locust Street Santa Cruz, CA 95060 Prepared by: Environmental ESLO2010-017.1 [Blank Page] ACKNOWLEDGEMENTS Tenera Environmental wishes to acknowledge the valuable contributions of the Santa Cruz Water Department, Soquel Creek Water District, and scwd² Task Force in conducting the Open Ocean Intake Effects Study. Specifically, Tenera would like to acknowledge the efforts of: City of Santa Cruz Water Department Soquel Creek Water District Bill Kocher, Director Laura Brown, General Manager Linette Almond, Engineering Manager Melanie Mow Schumacher, Public Information Heidi R. Luckenbach, Program Coordinator Coordinator Leah Van Der Maaten, Associate Engineer Catherine Borrowman, Professional and Technical scwd² Task Force Assistant Ryan Coonerty Todd Reynolds, Kennedy/Jenks and scwd² Bruce Daniels Technical Advisor Bruce Jaffe Dan Kriege Thomas LaHue Don Lane Cynthia Mathews Mike Rotkin Ed Porter Tenera’s project team included the following members: David L. Mayer, Ph.D., Tenera Environmental President and Principal Scientist John Steinbeck, Tenera Environmental Vice President and Principal Scientist Carol Raifsnider, Tenera Environmental Director of Operations and Principal Scientist Technical review and advice was provided by: Pete Raimondi, Ph.D., UCSC, Professor of Ecology and Evolutionary Biology in the Earth and Marine Sciences Dept. Gregor -
Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae. -
Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Spring 5-17-2017 Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality Brian Christopher Turner Portland State University Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Terrestrial and Aquatic Ecology Commons Let us know how access to this document benefits ou.y Recommended Citation Turner, Brian Christopher, "Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality" (2017). Dissertations and Theses. Paper 3620. https://doi.org/10.15760/etd.5512 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. Responses of Aquatic Non-Native Species to Novel Predator Cues and Increased Mortality by Brian Christopher Turner A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Environmental Sciences and Resources Dissertation Committee: Catherine E. de Rivera, Chair Edwin D. Grosholz Michael T. Murphy Greg M. Ruiz Ian R. Waite Portland State University 2017 Abstract Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native and previously established non-native predators, can prevent establishment, limit habitat use, and reduce abundance of non-native species. Management efforts by humans using methods designed to cause mass mortality (e.g., trapping, biocide applications) can reduce or eradicate non-native populations. -
2018 Master Plan for Fisheries: a Guide for Implementing the Marine
2018 Master Plan for Fisheries A Guide for Implementation of the Marine Life Management Act June 2018 State of California The Natural Resources Agency Department of Fish and Wildlife Acknowledgements The Marine Life Management Act (Appendix A) emphasizes the importance of stakeholder engagement in all areas of management, including the development and revision of the Master Plan. The Department thanks and acknowledges Tribes and tribal communities, and stakeholders for the thoughtful input that has been provided in a range of venues and formats throughout the two-year development of this 2018 Master Plan. The Department also appreciates the generous funding from the Ocean Protection Council and the Resources Legacy Fund, and the numerous partners who provided background material and tools for consideration as part of the preparation of the 2018 Master Plan. See Appendix B for a complete list of these partnerships and engagement efforts. Executive summary The Marine Life Management Act (MLMA) is California’s primary fisheries management law. It directs the California Department of Fish and Wildlife (Department) to develop a Master Plan to guide its implementation. The original Master Plan, adopted in 2001, is being updated to reflect new priorities and emerging management strategies for achieving the MLMA’s goals, and to better describe the Department’s inclusion of MLMA principles in management decisions. The 2018 Master Plan (Master Plan) replaces the original and is re-structured to better meet the specific management objectives identified in the MLMA. It is intended to be both a roadmap and a toolbox for implementation, providing guidance and direction in the following areas: Prioritization of management efforts The Master Plan includes an interim list of prioritized species for management action based on the results of a Productivity and Susceptibility Analysis (PSA). -
655 Appendix G
APPENDIX G: GLOSSARY Appendix G-1. Demersal Fish Species Alphabetized by Species Name. ....................................... G1-1 Appendix G-2. Demersal Fish Species Alphabetized by Common Name.. .................................... G2-1 Appendix G-3. Invertebrate Species Alphabetized by Species Name.. .......................................... G3-1 Appendix G-4. Invertebrate Species Alphabetized by Common Name.. ........................................ G4-1 G-1 Appendix G-1. Demersal Fish Species Alphabetized by Species Name. Demersal fish species collected at depths of 2-484 m on the southern California shelf and upper slope, July-October 2008. Species Common Name Agonopsis sterletus southern spearnose poacher Anchoa compressa deepbody anchovy Anchoa delicatissima slough anchovy Anoplopoma fimbria sablefish Argyropelecus affinis slender hatchetfish Argyropelecus lychnus silver hachetfish Argyropelecus sladeni lowcrest hatchetfish Artedius notospilotus bonyhead sculpin Bathyagonus pentacanthus bigeye poacher Bathyraja interrupta sandpaper skate Careproctus melanurus blacktail snailfish Ceratoscopelus townsendi dogtooth lampfish Cheilotrema saturnum black croaker Chilara taylori spotted cusk-eel Chitonotus pugetensis roughback sculpin Citharichthys fragilis Gulf sanddab Citharichthys sordidus Pacific sanddab Citharichthys stigmaeus speckled sanddab Citharichthys xanthostigma longfin sanddab Cymatogaster aggregata shiner perch Embiotoca jacksoni black perch Engraulis mordax northern anchovy Enophrys taurina bull sculpin Eopsetta jordani -
Ophiuroidea: Euryalida: Gorgonocephalidae) from Korea
ISSN 1226-9999 (print) ISSN 2287-7851 (online) Korean J. Environ. Biol. 33(2) : 205~208 (2015) http://dx.doi.org/10.11626/KJEB.2015.33.2.205 A Newly Recorded Basket Star of Genus Gorgonocephalus (Ophiuroidea: Euryalida: Gorgonocephalidae) from Korea Donghwan Kim and Sook Shin* Department of Life Science, Sahmyook University, Seoul 139-742, Korea Abstract - Some euryalid specimens were collected with fishing nets from Mipo, Gyungsangnam- do and Aewol, Jejudo Island, Korea. They were identified as Gorgonocephalus eucnemis (Müller & Troschel, 1842), belonging to family Gorgonocephalidae of order Euryalida, which was new to the Korean fauna. Their molecular analyses were done with newly intended COI primers of mitochondrial cytochrome oxidase I (COI) gene for the accurate molecular identification. The Korean G. eucnemis was coincident with this NCBI species as a result of Blast analysis, which showed the 99% similarity. In the current study, three Gorgonocephalus species have been report- ed from Korea. Key words: Gorgonocephalus eucnemis, basket star, morphology, molecular analysis, Korea INTRODUCTION MATERIALS AND METHODS Family Gorgonocephalidae including 34 genera is the Basket stars were collected at a depth of 100~150 m deep largest one of three families belonging to order Euryalida by fishing nets from Mipo, Korea Strait and Aewol, Jejudo (Okanishi and Fujita 2013) and its four genera, Astroboa, Island, Korea on June 1983 and January 2013, respectively. Astrocladus, Astrodendrum and Gorgonocephalus, have been The specimens were preserved in 95% ethyl alcohol and reported in Korean fauna (Shin 2013). Almost all Gorgono- identified on the basis of morphological characteristics and cephalus species distribute exclusively in deep water and are molecular analyses. -
Systema Brachyurorum: Part I
THE RAFFLES BULLETIN OF ZOOLOGY 2008 17: 1–286 Date of Publication: 31 Jan.2008 © National University of Singapore SYSTEMA BRACHYURORUM: PART I. AN ANNOTATED CHECKLIST OF EXTANT BRACHYURAN CRABS OF THE WORLD Peter K. L. Ng Raffles Museum of Biodiversity Research, Department of Biological Sciences, National University of Singapore, Kent Ridge, Singapore 119260, Republic of Singapore Email: [email protected] Danièle Guinot Muséum national d'Histoire naturelle, Département Milieux et peuplements aquatiques, 61 rue Buffon, 75005 Paris, France Email: [email protected] Peter J. F. Davie Queensland Museum, PO Box 3300, South Brisbane, Queensland, Australia Email: [email protected] ABSTRACT. – An annotated checklist of the extant brachyuran crabs of the world is presented for the first time. Over 10,500 names are treated including 6,793 valid species and subspecies (with 1,907 primary synonyms), 1,271 genera and subgenera (with 393 primary synonyms), 93 families and 38 superfamilies. Nomenclatural and taxonomic problems are reviewed in detail, and many resolved. Detailed notes and references are provided where necessary. The constitution of a large number of families and superfamilies is discussed in detail, with the positions of some taxa rearranged in an attempt to form a stable base for future taxonomic studies. This is the first time the nomenclature of any large group of decapod crustaceans has been examined in such detail. KEY WORDS. – Annotated checklist, crabs of the world, Brachyura, systematics, nomenclature. CONTENTS Preamble .................................................................................. 3 Family Cymonomidae .......................................... 32 Caveats and acknowledgements ............................................... 5 Family Phyllotymolinidae .................................... 32 Introduction .............................................................................. 6 Superfamily DROMIOIDEA ..................................... 33 The higher classification of the Brachyura ........................ -
Final Report Form
Appendix K – OSRI Grant Policy Manual Final Report Form - Oil Spill Recovery Institute An electronic copy of this report shall be submitted by mail, or e-mail to the OSRI Research Program Manager [email protected] and Financial Office [email protected] Mailing address: P.O. Box 705 - Cordova, AK 99574 - Deadline for this report: Submittal within 90 days of grant/award expiration. Also, note that a summary Financial Statement shall be submitted within 45 days of the grant expiration. The final invoice and financial statement is due within 90 days of the grant/award expiration. Today’s date: 15 April 2014 Name of awardee/grantee: Bodil Bluhm OSRI Contract Number: 11-10-14 Project title: Data rescue: Epibenthic invertebrates from the Beaufort Sea sampled during WEBSEC and OCS cruises in the 1970s Dates project began and ended: PART I - Outline for Final Program or Technical Report This report must be submitted by all grantees. However, for those whose project work resulted in a peer reviewed publication (whether in draft or final form), this report may be abbreviated and the publication attached as part of the report. A. Non-technical Abstract or summary of project work that does not exceed 2 pages and includes an overview of the project. This abstract should describe the nature and significance of the project. It may be provided to the Advisory Board and could be used by OSRI staff to answer inquiries as to the nature and significance of the project. This project sought to rescue data on epibenthic invertebrates and fish sampled by trawls and photographs in the Alaskan Beaufort Sea during Western Beaufort Sea Ecological Cruise (WEBSEC) and Outer Continental Shelf (OCS) surveys in the 1970s.