Lichenized Ascomycota: Gyalectales)
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Phylogeny and Classification of Cryptodiscus, with a Taxonomic Synopsis of the Swedish Species
Fungal Diversity Phylogeny and classification of Cryptodiscus, with a taxonomic synopsis of the Swedish species Baloch, E.1,3*, Gilenstam, G.2 and Wedin, M.1 1Department of Cryptogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden. 2Department of Ecology and Environmental Sciences, Umeå University, SE-901 87 Umeå, Sweden. 3Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK. Baloch, E., Gilenstam, G. and Wedin, M. (2009). Phylogeny and classification of Cryptodiscus, with a taxonomic synopsis of the Swedish species. Fungal Diversity 38: 51-68. The phylogeny, taxonomy and classification of Cryptodiscus are examined. The current generic and species delimitations, and the relationship of the genus within the Ostropomycetidae, are tested by molecular phylogenetic analyses of the nuclear ITS and LSU rDNA and the mitochondrial SSU rDNA. In our new circumscription Cryptodiscus is a monophyletic group of saprotrophic and lichenized fungi characterized by small, urceolate apothecia, mostly hyaline ascomatal walls without any embedded crystals, no clear periphysoids, and with oblong to narrow- cylindrical septate ascospores. Cryptodiscus forms a well-supported clade together with Absconditella and the remaining Stictidaceae. Paschelkiella and Bryophagus are synonymised with Cryptodiscus. Species excluded from Cryptodiscus are Cryptodiscus anguillosporus, C. angulosus, C. microstomus, and C. rhopaloides. Cryptodiscus in Sweden is revised and six species are accepted, of which one is newly described: C. foveolaris, C. gloeocapsa comb. nov. (≡ Bryophagus gloeocapsa), C. incolor sp. nov., C. pallidus, C. pini comb. nov. (≡ Paschelkiella pini), and the rediscovered species C. tabularum. The additional new combinations Cryptodiscus similis comb. nov. and C. -
BGBM Annual Report 2017–2019
NETWORKING FOR DIVERSITY Annual Report 2017 – 2019 2017 – BGBM BGBM Annual Report 2017 – 2019 Cover image: Research into global biodiversity and its significance for humanity is impossible without networks. The topic of networking can be understood in different ways: in the natural world, with the life processes within an organism – visible in the network of the veins of a leaf or in the genetic diversity in populations of plants – networking takes place by means of pollen, via pollinators or the wind. In the world of research, individual objects, such as a particular plant, are networked with the data obtained from them. Networking is also crucial if this data is to be effective as a knowledge base for solving global issues of the future: collaboration between scientific experts within and across disciplines and with stakeholders at regional, national and international level. Contents Foreword 5 Organisation 56 A network for plants 6 Facts and figures 57 Staff, visiting scientists, doctoral students 57 Key events of 2017 – 2019 10 Affiliated and unsalaried scientists, volunteers 58 BGBM publications 59 When diversity goes online 16 Species newly described by BGBM authors 78 Families and genera newly described by BGBM authors 82 On the quest for diversity 20 Online resources and databases 83 Externally funded projects 87 Invisible diversity 24 Hosted scientific events 2017 – 2019 92 Collections 93 Humboldt 2.0 30 Library 96 BGBM Press: publications 97 Between East and West 36 Botanical Museum 99 Press and public relations 101 At the service of science 40 Visitor numbers 102 Budget 103 A research museum 44 Publication information 104 Hands-on science 50 Our symbol, the corncockle 52 4 5 Foreword BGBM Annual Report 2017 – 2019 We are facing vital challenges. -
Bibliography and Checklist of Foliicolous Lichenized Fungi up to 1992
93 Tropical Bryology 7:93-148, 1993 Bibliography and checklist of foliicolous lichenized fungi up to 1992 Farkas, E. E. Institute of Ecology and Botany, Hungarian Academy of Sciences, Vácrátót, H-2163, Hungary Sipman, H. J. M. Botanischer Garten und Botanisches Museum, Königin-Luise-Strasse 6-8, D- 14191 Berlin, Germany Abstract: Bibliographic records are presented of 324 scientific papers on foliicolous lichenized fungi published subsequent to Santesson’s survey of 1952. The 482 species presently known are listed in an alphabetical checklist, with references to important descriptions, keys and illustrations published by or after Santesson (1952), and an indication of the distribution. Also added are all synonyms used after 1952. Introductory chapters deal with the present state of research on foliicolous lichens and its history. The following new combination is proposed: Strigula smaragdula Fr. var. stellata (Nyl. & Cromb.)Farkas. Introduction In 1952 Santesson published a revision of list was far from complete. Moreover, the yearly the taxonomy of the obligately foliicolous liche- output of publications on the subject was increa- nized fungi, which included a survey of all sing rapidly, so that an updated version of the known taxa and of all relevant literature until bibliography and a checklist seemed necessary. that time. Since then, a large amount of new In this joint account, E. F. has contributed information on taxonomy, distribution, and to a most of the introduction, the bibliography and lesser extent ecology, has been published. This the list of new taxa after 1952 with literature information is contained in many papers in vari- citations, H. S. -
Cuivre Bryophytes
Trip Report for: Cuivre River State Park Species Count: 335 Date: Multiple Visits Lincoln County Agency: MODNR Location: Lincoln Hills - Bryophytes Participants: Bryophytes from Natural Resource Inventory Database Bryophyte List from NRIDS and Bruce Schuette Species Name (Synonym) Common Name Family COFC COFW Acarospora unknown Identified only to Genus Acarosporaceae Lichen Acrocordia megalospora a lichen Monoblastiaceae Lichen Amandinea dakotensis a button lichen (crustose) Physiaceae Lichen Amandinea polyspora a button lichen (crustose) Physiaceae Lichen Amandinea punctata a lichen Physiaceae Lichen Amanita citrina Citron Amanita Amanitaceae Fungi Amanita fulva Tawny Gresette Amanitaceae Fungi Amanita vaginata Grisette Amanitaceae Fungi Amblystegium varium common willow moss Amblystegiaceae Moss Anisomeridium biforme a lichen Monoblastiaceae Lichen Anisomeridium polypori a crustose lichen Monoblastiaceae Lichen Anomodon attenuatus common tree apron moss Anomodontaceae Moss Anomodon minor tree apron moss Anomodontaceae Moss Anomodon rostratus velvet tree apron moss Anomodontaceae Moss Armillaria tabescens Ringless Honey Mushroom Tricholomataceae Fungi Arthonia caesia a lichen Arthoniaceae Lichen Arthonia punctiformis a lichen Arthoniaceae Lichen Arthonia rubella a lichen Arthoniaceae Lichen Arthothelium spectabile a lichen Uncertain Lichen Arthothelium taediosum a lichen Uncertain Lichen Aspicilia caesiocinerea a lichen Hymeneliaceae Lichen Aspicilia cinerea a lichen Hymeneliaceae Lichen Aspicilia contorta a lichen Hymeneliaceae Lichen -
Foliicolous Lichens and Their Lichenicolous Fungi Collected During the Smithsonian International Cryptogamic Expedition to Guyana 1996
45 Tropical Bryology 15: 45-76, 1998 Foliicolous lichens and their lichenicolous fungi collected during the Smithsonian International Cryptogamic Expedition to Guyana 1996 Robert Lücking Lehrstuhl für Pflanzensystematik, Universität Bayreuth, D-95447 Bayreuth, Germany Abstract: A total of 233 foliicolous lichen species and 18 lichenicolous fungi are reported from Guyana as a result of the Smithsonian „International Cryptogamic Expedition to Guyana“ 1996. Three lichens and two lichenicolous fungi are new to science: Arthonia grubei sp.n., Badimia subelegans sp.n., Calopadia pauciseptata sp.n., Opegrapha matzeri sp.n. (lichenicolous on Amazonomyces sprucei), and Pyrenidium santessonii sp.n. (lichenicolous on Bacidia psychotriae). The new combination Strigula janeirensis (Bas.: Phylloporina janeirensis; syn.: Raciborskiella janeirensis) is proposed. Apart from Amazonomyces sprucei and Bacidia psychotriae, Arthonia lecythidicola (with the lichenicolous A. pseudopegraphina) and Byssolecania deplanata (with the lichenicolous Opegrapha cf. kalbii) are reported as new hosts for lichenicolous fungi. Arthonia pseudopegraphina growing on A. lecythidicola is the first known case of adelphoparasitism at generic level in foliicolous Arthonia. Arthonia flavoverrucosa, Badimia polillensis, and Byssoloma vezdanum are new records for the Neotropics, and 115 species are new for Guyana, resulting in a total of c. 280 genuine foliicolous species reported for that country, while Porina applanata and P. verruculosa are excluded from its flora. The foliicolous lichen flora of Guyana is representative for the Guianas (Guyana, Suriname, French Guiana) and has great affinities with the Amazon region, while the degree of endemism is low. A characteristic species for this area is Amazonomyces sprucei. Species composition is typical of Neotropical lowland to submontane humid forests, with a dominance of the genera Porina, Strigula, and Mazosia. -
Pannariaceae Generic Taxonomy LL Ver. 27.9.2013.Docx
http://www.diva-portal.org Preprint This is the submitted version of a paper published in The Lichenologist. Citation for the original published paper (version of record): Ekman, S. (2014) Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota). The Lichenologist, 46: 627-656 http://dx.doi.org/10.1017/S002428291400019X Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-943 Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM & Per M. JØRGENSEN S. Ekman (corresponding author): Museum of Evolution, Uppsala University, Norbyvägen 16, SE –75236 Uppsala, Sweden. Email: [email protected] M. Wedin: Dept. of Botany, Swedish Museum of Natural History, Box 50007, SE –10405 Stockholm, Sweden. L. Lindblom and P. M. Jørgensen: Dept. of Natural History, University Museum of Bergen, Box 7800, NO –5020 Bergen, Norway. Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specifically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorporating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as morphological and chemical data available. -
New Or Otherwise Interesting Lichens. VII, Including a World Key to the Lichen Genus Heiomasia
New or otherwise interesting lichens. VII 1 New or otherwise interesting lichens. VII, including a world key to the lichen genus Heiomasia Klaus Kalb Lichenologisches Institut Neumarkt Im Tal 12, D-92318 Neumarkt/Opf., Germany and Institute of Plant Sciences, University of Regensburg, Universitätsstraße 31 D-93053 Regensburg, Germany. email: [email protected] Abstract Eight species new to science are described, Allographa grandis from Cameroon which is distinguished by its very large ascomata, richly muriform, large ascospores and an inspersed hymenium (type B); Bapalmuia microspora from Malaysia which differs from B. consanguinea in having shorter and broader ascospores and a granular thallus; Diorygma cameroonense from Cameroon which differs from D. sticticum in having larger ascospores with more septa; Glyphis frischiana which is similar to G. atrofusca but differs in producing secondary lichen compounds, the first species in Glyphis in doing so. Two new species are added to the genus Heiomasia, viz. H. annamariae from Malaysia, which differs from H. sipmanii in producing the stictic acid aggr. and H. siamensis from Thailand, distinguished from H. sipmanii in containing hypoprotocetraric acid as a major metabolite. The published chemistry of several species of Heiomasia is revised and a new substance, heiomaseic acid, with relative Rf-values 5/19/8, is demonstrated for H. seavey- orum, H. siamensis and H. sipmanii. A world-wide key to the known species of Heiomasia is presented. Myriotrema squamiferum, a fertile species from Malaysia, is distinguished from M. frondosolucens by lacking lichexanthone. As there are conflicting literature data concerning Ocellularia crocea, the type specimen was investigated and the results are reported. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
One Hundred and Seventy-Five New Species of Graphidaceae: Closing the Gap Or a Drop in the Bucket?
Phytotaxa 189 (1): 007–038 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2014 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.189.1.4 One hundred and seventy-five new species of Graphidaceae: closing the gap or a drop in the bucket? ROBERT LÜCKING1, MARK K. JOHNSTON1, ANDRÉ APTROOT2, EKAPHAN KRAICHAK1, JAMES C. LENDEMER3, KANSRI BOONPRAGOB4, MARCELA E. S. CÁCERES5, DAMIEN ERTZ6, LIDIA ITATI FERRARO7, ZE-FENG JIA8, KLAUS KALB9,10, ARMIN MANGOLD11, LEKA MANOCH12, JOEL A. MERCADO-DÍAZ13, BIBIANA MONCADA14, PACHARA MONGKOLSUK4, KHWANRUAN BUTSATORN PAPONG 15, SITTIPORN PARNMEN16, ROUCHI N. PELÁEZ14, VASUN POENGSUNGNOEN17, EIMY RIVAS PLATA1, WANARUK SAIPUNKAEW18, HARRIE J. M. SIPMAN19, JUTARAT SUTJARITTURAKAN10,18, DRIES VAN DEN BROECK6, MATT VON KONRAT1, GOTHAMIE WEERAKOON20 & H. THORSTEN 1 LUMBSCH 1Science & Education, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.; email: [email protected], [email protected], [email protected], [email protected] 2ABL Herbarium, G.v.d.Veenstraat 107, NL-3762 XK Soest, The Netherlands; email: [email protected] 3Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126, U.S.A.; email: [email protected] 4Lichen Research Unit, Department of Biology, Faculty of Science, Ramkhamhaeng University, Ramkhamhaeng 24 road, Bangkok, 10240 Thailand; email: [email protected] 5Departamento de Biociências, Universidade Federal de Sergipe, CEP: 49500-000,