Study of Phylogenetic Tree and Morphology of Aporrectodea Based on Mitochondrial Marker (16S Rrna Gene) in Some Area South of Baghdad/ Iraq
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Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Díaz Cosín, Darío J., Marta Novo, Rosa Fernández, Daniel Fernández Marchán, and Mónica Gutiérrez. 2014. “A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data.” ZooKeys (399): 71-87. doi:10.3897/zookeys.399.7273. http:// dx.doi.org/10.3897/zookeys.399.7273. Published Version doi:10.3897/zookeys.399.7273 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12406906 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 -
Taxonomic Assessment of Lumbricidae (Oligochaeta) Earthworm Genera Using DNA Barcodes
European Journal of Soil Biology 48 (2012) 41e47 Contents lists available at SciVerse ScienceDirect European Journal of Soil Biology journal homepage: http://www.elsevier.com/locate/ejsobi Original article Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes Marcos Pérez-Losada a,*, Rebecca Bloch b, Jesse W. Breinholt c, Markus Pfenninger b, Jorge Domínguez d a CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal b Biodiversity and Climate Research Centre, Lab Centre, Biocampus Siesmayerstraße, 60323 Frankfurt am Main, Germany c Department of Biology, Brigham Young University, Provo, UT 84602-5181, USA d Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, E-36310, Spain article info abstract Article history: The family Lumbricidae accounts for the most abundant earthworms in grasslands and agricultural Received 26 May 2011 ecosystems in the Paleartic region. Therefore, they are commonly used as model organisms in studies of Received in revised form soil ecology, biodiversity, biogeography, evolution, conservation, soil contamination and ecotoxicology. 14 October 2011 Despite their biological and economic importance, the taxonomic status and evolutionary relationships Accepted 14 October 2011 of several Lumbricidae genera are still under discussion. Previous studies have shown that cytochrome c Available online 30 October 2011 Handling editor: Stefan Schrader oxidase I (COI) barcode phylogenies are informative at the intrageneric level. Here we generated 19 new COI barcodes for selected Aporrectodea specimens in Pérez-Losada et al. [1] including nine species and 17 Keywords: populations, and combined them with all the COI sequences available in Genbank and Briones et al. -
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of • Stefano Bocchi and Francesca Orlando Agricultural Practices on Biodiversity of Soil Invertebrates Edited by Stefano Bocchi and Francesca Orlando Printed Edition of the Special Issue Published in Agronomy www.mdpi.com/journal/agronomy Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Editors Stefano Bocchi Francesca Orlando MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editors Stefano Bocchi Francesca Orlando University of Milan University of Milan Italy Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Agronomy (ISSN 2073-4395) (available at: https://www.mdpi.com/journal/agronomy/special issues/Soil Invertebrates). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Volume Number, Page Range. ISBN 978-3-03943-719-1 (Hbk) ISBN 978-3-03943-720-7 (PDF) Cover image courtesy of Valentina Vaglia. c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. -
Appendix 5.3 MON 810 Literature Review – List of All Hits (June 2016
Appendix 5.3 MON 810 literature review – List of all hits (June 2016-May 2017) -Web of ScienceTM Core Collection database 12/8/2016 Web of Science [v.5.23] Export Transfer Service Web of Science™ Page 1 (Records 1 50) [ 1 ] Record 1 of 50 Title: Ground beetle acquisition of Cry1Ab from plant and residuebased food webs Author(s): Andow, DA (Andow, D. A.); Zwahlen, C (Zwahlen, C.) Source: BIOLOGICAL CONTROL Volume: 103 Pages: 204209 DOI: 10.1016/j.biocontrol.2016.09.009 Published: DEC 2016 Abstract: Ground beetles are significant predators in agricultural habitats. While many studies have characterized effects of Bt maize on various carabid species, few have examined the potential acquisition of Cry toxins from live plants versus plant residue. In this study, we examined how live Bt maize and Bt maize residue affect acquisition of Cry1Ab in six species. Adult beetles were collected live from fields with either currentyear Bt maize, oneyearold Bt maize residue, twoyearold Bt maize residue, or fields without any Bt crops or residue for the past two years, and specimens were analyzed using ELISA. Observed Cry1Ab concentrations in the beetles were similar to that reported in previously published studies. Only one specimen of Cyclotrachelus iowensis acquired Cry1Ab from twoyearold maize residue. Three species acquired Cry1Ab from fields with either live plants or plant residue (Cyclotrachelus iowensis, Poecilus lucublandus, Poecilus chalcites), implying participation in both liveplant and residuebased food webs. Two species acquired toxin from fields with live plants, but not from fields with residue (Bembidion quadrimaculatum, Elaphropus incurvus), suggesting participation only in live plantbased food webs. -
French Mediterranean Islands As a Refuge of Relic Earthworm Species: Cataladrilus Porquerollensis Sp
European Journal of Taxonomy 701: 1–22 ISSN 2118-9773 https://doi.org/10.5852/ejt.2020.701 www.europeanjournaloftaxonomy.eu 2020 · Marchán D.F. et al. This work is licensed under a Creative Commons Attribution License (CC BY 4.0). Research article urn:lsid:zoobank.org:pub:D9291955-F619-46EA-90E1-DA756D1B7C55 French Mediterranean islands as a refuge of relic earthworm species: Cataladrilus porquerollensis sp. nov. and Scherotheca portcrosana sp. nov. (Crassiclitellata, Lumbricidae) Daniel F. MARCHÁN 1,3,*, Thibaud DECAËNS 2,*, Darío J. DÍAZ COSÍN 3, Mickaël HEDDE 4, Emmanuel LAPIED 5 & Jorge DOMÍNGUEZ 6 1,6 Grupo de Ecoloxía Animal (GEA), Universidade de Vigo, E-36310 Vigo, Spain. 2 CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France. 3 Department of Biodiversity, Ecology and Evolution, Faculty of Biology, Universidad Complutense de Madrid, Madrid, Spain. 4 UMR Eco&Sols, INRAE–IRD–CIRAD–SupAgro Montpellier, 2 Place Viala, 34060 Montpellier Cedex 2, France. 5 Taxonomia Biodiversity Fund, 7 rue Beccaria, 72012, Paris, France. * Corresponding authors: [email protected]; [email protected] 3 Email: [email protected] 4 Email: [email protected] 5 Email: [email protected] 6 Email: [email protected] 1 urn:lsid:zoobank.org:author:3B3731B6-B5FB-409A-A7A3-99FD0F96D688 2 urn:lsid:zoobank.org:author:B61F61B2-3012-4526-8FF9-DC94D372AF77 3 urn:lsid:zoobank.org:author:38538B17-F127-4438-9DE2-F9D6C597D044 4 urn:lsid:zoobank.org:author:F4A219F7-7E75-4333-8293-3004B3CD62C5 5 urn:lsid:zoobank.org:author:B1FB8658-DFC3-481C-A0BE-B8488A018611 6 urn:lsid:zoobank.org:author:167575D5-D2CC-4B37-8B1D-0233E6B154E5 Abstract. -
Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 Departamento de Zoología y Antropología Física, Facultad de Biología, Universidad Complutense de Madrid, C/ José Antonio Nováis 2, 28040, Madrid, Spain 2 Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10, 3TL, UK3 Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA † http://zoobank.org/38538B17-F127-4438-9DE2-F9D6C597D044 ‡ http://zoobank.org/79DA5419-91D5-4EAB-BC72-1E46F10C716A § http://zoobank.org/99618966-BB50-4A01-8FA0-7B1CC31686B6 | http://zoobank.org/CAB83B57-ABD1-40D9-B16A-654281D71D58 ¶ http://zoobank.org/E1A7E77A-9CD5-4D67-88A3-C7F65AD6A5BE Corresponding author: Darío J. Díaz Cosín ([email protected]) Academic editor: R. Blakemore | Received 17 February 2014 | Accepted 25 March 2014 | Published 9 April 2014 http://zoobank.org/F5AC3116-E79E-4442-9B26-2765A5243D5E Citation: Cosín DJD, Novo M, Fernández R, Marchán DF, Gutiérrez M (2014) A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data. ZooKeys 399: 71–87. doi: 10.3897/zookeys.399.7273 Abstract The morphological and anatomical simplicity of soil dwelling animals, such as earthworms, has limited the establishment of a robust taxonomy making it sometimes subjective to authors’ criteria. -
Earthworm (Clitellata; Megadrili) Records from Adana Province
Sakarya University Journal of Science ISSN 1301-4048 | e-ISSN 2147-835X | Period Bimonthly | Founded: 1997 | Publisher Sakarya University | http://www.saujs.sakarya.edu.tr/ Title: Earthworm (Clitellata; Megadrili) Records from Adana Province Authors: İbrahim Mete Mısırlıoğlu, Hristo Valchovski Recieved: 2018-06-06 08:54:19 Accepted: 2019-07-01 19:06:44 Article Type: Research Article Volume: 23 Issue: 6 Month: December Year: 2019 Pages: 1106-1109 How to cite İbrahim Mete Mısırlıoğlu, Hristo Valchovski ; (2019), Earthworm (Clitellata; Megadrili) Records from Adana Province. Sakarya University Journal of Science, 23(6), 1106-1109, DOI: 10.16984/saufenbilder.431200 Access link http://www.saujs.sakarya.edu.tr/issue/44246/431200 New submission to SAUJS http://dergipark.gov.tr/journal/1115/submission/start Sakarya University Journal of Science 23(6), 1106-1109, 2019 Earthworm (Clitellata; Megadrili) Records from Adana Province İbrahim Mete Mısırlıoğlu*1, Hristo Valchovski 2 Abstract The current study deals with earthworm biodiversity of Adana Province. Identification was made by examining the earthworm specimens collected in 6 different localities. At the end of the study, 5 species belonging to 3 genus were found: Allolobophora chlorotica (Savigny, 1826), Aporrectodea caliginosa (Savigny, 1826), Aporrectodea rosea (Savigny, 1826), Aporrectodea trapezoides (Dugès, 1828) and Octodrilus transpadanus (Rosa, 1884). Keywords: Clitellata, Earthworms, Lumbricidae, Megadrili, Fauna of Turkey. called Adana Ovası, but the remaining part in the 1. INTRODUCTION southern part is called Çukurova and the part on the north side is called Upova or Anavarza. The city is located at 350-380 north latitude and 340- Eightythree taxa were registered from Turkey so 360 east longitude on both sides of Seyhan River far. -
(Annelida: Clitellata: Oligochaeta) Earthworms
etics & E en vo g lu t lo i y o h n a P r f y Journal of Phylogenetics & Perez-Losada et al., J Phylogen Evolution Biol 2015, 3:1 o B l i a o n l r o DOI: 10.4172/2329-9002.1000140 u g o y J Evolutionary Biology ISSN: 2329-9002 Research Article Open Access An Updated Multilocus Phylogeny of the Lumbricidae (Annelida: Clitellata: Oligochaeta) Earthworms Marcos Pérez-Losada1-3*, Jesse W Breinholt4, Manuel Aira5 and Jorge Domínguez5 1CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal. 2Computational Biology Institute, George Washington University, Ashburn, VA 20147, USA 3Department of Invertebrate Zoology, US National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA 4Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA 5Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, E-36310, Spain Abstract Lumbricidae earthworms dominate agricultural lands and often natural terrestrial ecosystems in temperate regions in Europe. They impact soil properties and nutrient cycling, shaping plant community composition and aboveground food webs. The simplicity of the earthworm body plan has hampered morphology-based classifications and taxonomy; hence current research on Lumbricidae systematic relies mostly on molecular data from multiple or single locus [e.g., cytochrome oxidase subunit I (COI) barcodes] to infer evolutionary relationships, validate taxonomic groups and/or identify species. Here we use multiple nuclear and mitochondrial gene regions (including COI) to generate updated maximum likelihood and Bayesian phylogenies of the family Lumbricidae. We then compare these trees to new COI trees to assess the performance of COI at inferring lumbricid inter-generic relationships. -
Identifying Earthworms (Oligochaeta, Megadrili) of the Southern Kuril Islands Using DNA Barcodes S
Animal Biodiversity and Conservation 41.1 (2018) 9 Identifying earthworms (Oligochaeta, Megadrili) of the Southern Kuril Islands using DNA barcodes S. V. Shekhovtsov, Yu. N. Sundukov, R. J. Blakemore, K. B. Gongalsky, S. E. Peltek Shekhovtsov, S. V., Sundukov, Yu. N., Blakemore, R. J., Gongalsky, K. B., Peltek, S. E., 2018. Identifying earth- worms (Oligochaeta, Megadrili) of the Southern Kuril Islands using DNA barcodes. Animal Biodiversity and Conservation, 41.1: 9–17, Doi: https://doi.org/10.32800/abc.2018.41.0009 Abstract Identifying earthworms (Oligochaeta, Megadrili) of the Southern Kuril Islands using DNA barcodes. The Kuril Islands are a volcanic archipelago located between Hokkaido and Kamchatka. In this study we investigated earthworm fauna of three of the Southern Kuril Islands, Kunashir, Shikotan, and Yuri, using both morphological analysis and DNA barcoding. Our results highlight the potential of DNA barcoding for studying earthworm fauna: while previous studies reported only six earthworm species and subspecies on the Southern Kurils, we detected 15 genetic clusters. Six of them correspond to European cosmopolites; six, to Asian species; and three, to unidentified species. While no European earthworms were found on Yuri that is uninhabited since WWII, they dominated on larger and inhabited Kunashir and Shikotan, suggesting that they are recent invaders. Of the six Asian species, five had cox1 sequences identical or very closely related to published sequences from the mainland or the Japanese islands and thus are recent invaders. Key words: Earthworms, Megadrili, cox1, Barcoding, Kuril islands Resumen Identificación de las lombrices (Oligochaeta, Megadrili) del sur de las Islas Kuriles utilizando códigos de barras de ADN. -
Catalogue of the Lumbricidae (Annelida, Clitellata, Lumbricoidea) from South America, with Remarks on the Systematics of the Lumbricina
Catalogue of the Lumbricidae (Annelida, Clitellata, Lumbricoidea) from South America, with remarks on the systematics of the Lumbricina Martin Lindsey CHRISTOFFERSEN Departamento de Sistemática e Ecologia, Universidade Federal da Paraíba, 58059-900, João Pessoa, Paraíba (Brazil) [email protected] Christoffersen M. L. 2011. — Catalogue of the Lumbricidae (Annelida, Clitellata, Lumbricoidea) from South America, with remarks on the systematics of the Lumbricina. Zoosystema 33 (2) : 141-173. DOI: 10.5252/z2011n2a2. ABSTRACT A catalogue of terrestrial Lumbricidae produced 28 nominal taxa (species and subspecies) reported to date from South America. Full synonyms and detailed South American occurrences are provided for each entity. Th is is the fi rst detailed assessment of the distribution of South American Lumbricidae. Bimastos sophiae, known only from Argentina, and Eiseniella tetraedra cerni, known only from Chile, are presently the only taxa restricted to South America. Th e remaining species are widely distributed in temperate regions of the globe. Lumbricinae are of Holarctic origin and are mainly restricted to subtropical latitudes in South America, except for the mountain ranges of the Andes, extending northward into the tropical region up to Colombia and then the mountain ranges extending eastward along the Guayana shield along Venezuela and the Guyanas; in Brazil, lumbricids are restricted to the southern and southeastern states, primarily in KEY WORDS the colder subtropical climate region and mountain ranges. Th e Lumbricina Annelida, Lumbricidae, are megadrile earthworms characterized by a multilayered clitellum, eggs small anthropogenic soil relative to microdriles, gastrulation by emboly, intestinal specializations such as fauna, biodiversity, the typhlosole, a complex circulatory apparatus, two pairs of testicles and sperm cold-adapted species, sacs, and the male pores located at least two segments behind the posterior testes. -
Diversification Patterns in Cosmopolitan Earthworms: Similar
Molecular Phylogenetics and Evolution 94 (2016) 701–708 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Diversification patterns in cosmopolitan earthworms: similar mode but different tempo q ⇑ Rosa Fernández a,b, , Marta Novo a,1, Daniel F. Marchán a, Darío J. Díaz Cosín a a Departamento de Zoología y Antropología Física, Facultad de Biología, Universidad Complutense de Madrid, C/José Antonio Nova´is, 2, 28040 Madrid, Spain b Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA article info abstract Article history: Comparative phylogeography of widespread species that span the same geographic areas can elucidate the Received 9 February 2015 influence of historical events on current patterns of biodiversity, identify patterns of co-vicariance, and Revised 21 July 2015 therefore aid the understanding of general evolutionary processes. Soil-dwelling animals present Accepted 22 July 2015 characteristics that make them suitable for testing the effect of the palaeogeographical events on their Available online 20 August 2015 distribution and diversification, such as their low vagility and population structure. In this study, we shed light on the spatial lineage diversification and cladogenesis of two widely-distributed cosmopolitan and Keywords: invasive earthworms (Aporrectodea rosea and A. trapezoides) in their putative ancestral area of origin, the Demographic history Western Palearctic, and a few populations in North America. Molecular analyses were conducted on Lineage diversification Lumbricidae mitochondrial and nuclear markers from 220 (A. rosea) and 198 (A. trapezoides) individuals collected in Mediterranean palaeogeography 56 and 57 localities, respectively. -
Developing a Systematic Sampling Method for Earthworms in and Around Deadwood Frank Ashwood1* , Elena I
Ashwood et al. Forest Ecosystems (2019) 6:33 https://doi.org/10.1186/s40663-019-0193-z RESEARCH Open Access Developing a systematic sampling method for earthworms in and around deadwood Frank Ashwood1* , Elena I. Vanguelova1, Sue Benham1 and Kevin R. Butt2 Abstract Background: The ecological importance of deadwood is widely acknowledged, however popular forestry practices may reduce deadwood from a site, and most European forests now fall below recommended targets, putting deadwood-associated species at risk. There is increasing evidence that earthworm species which live in alternative habitats such as deadwood can be missed by traditional sampling methods, which can lead to false classifications regarding species distributions and conservation status and value. Resolving the current lack of a systematic and quantitative methodology for surveying earthworms in microhabitats such as deadwood may therefore lead to valuable insights into earthworm species ecologies in forest ecosystems. The main aim of this research was to develop and trial a systematic method for surveying deadwood-associated earthworms, with potential future application to other invertebrates. Sampling of earthworms within soil, deadwood and soil beneath deadwood was carried out across a chronosequence of unmanaged oak forest stands. The results were then used to investigate the influence of soil and deadwood environmental factors and woodland age on the earthworm populations of oak-dominated broadleaf woodlands. Results: Results from our surveys successfully show that in oak woodland habitats with deadwood, omitting deadwood microhabitats from earthworm sampling can lead to underestimates of total earthworm species richness, abundance and biomass. We also found a significantly greater proportion of juveniles within the earthworm communities of broadleaf deadwood, where temperature and moisture conditions were more favourable than surrounding open soil habitats.