Assessment of Relationships Between Earthworms and Soil Abiotic and Biotic Factors As a Tool in Sustainable Agricultural
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Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Díaz Cosín, Darío J., Marta Novo, Rosa Fernández, Daniel Fernández Marchán, and Mónica Gutiérrez. 2014. “A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data.” ZooKeys (399): 71-87. doi:10.3897/zookeys.399.7273. http:// dx.doi.org/10.3897/zookeys.399.7273. Published Version doi:10.3897/zookeys.399.7273 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12406906 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 -
Taxonomic Assessment of Lumbricidae (Oligochaeta) Earthworm Genera Using DNA Barcodes
European Journal of Soil Biology 48 (2012) 41e47 Contents lists available at SciVerse ScienceDirect European Journal of Soil Biology journal homepage: http://www.elsevier.com/locate/ejsobi Original article Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes Marcos Pérez-Losada a,*, Rebecca Bloch b, Jesse W. Breinholt c, Markus Pfenninger b, Jorge Domínguez d a CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal b Biodiversity and Climate Research Centre, Lab Centre, Biocampus Siesmayerstraße, 60323 Frankfurt am Main, Germany c Department of Biology, Brigham Young University, Provo, UT 84602-5181, USA d Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, E-36310, Spain article info abstract Article history: The family Lumbricidae accounts for the most abundant earthworms in grasslands and agricultural Received 26 May 2011 ecosystems in the Paleartic region. Therefore, they are commonly used as model organisms in studies of Received in revised form soil ecology, biodiversity, biogeography, evolution, conservation, soil contamination and ecotoxicology. 14 October 2011 Despite their biological and economic importance, the taxonomic status and evolutionary relationships Accepted 14 October 2011 of several Lumbricidae genera are still under discussion. Previous studies have shown that cytochrome c Available online 30 October 2011 Handling editor: Stefan Schrader oxidase I (COI) barcode phylogenies are informative at the intrageneric level. Here we generated 19 new COI barcodes for selected Aporrectodea specimens in Pérez-Losada et al. [1] including nine species and 17 Keywords: populations, and combined them with all the COI sequences available in Genbank and Briones et al. -
The Effect of Invasive Earthworm Lumbricus Terrestris on The
The Effect of Invasive Earthworm Lumbricus terrestris on the Distribution of Nitrogen in Soil Profile Sarah Adelson, Christine Doman, Gillian Golembiewski, Luke Middleton University of Michigan Biological Station, Spring 2009 Abstract The purpose of this study was to determine if Lumbricus terrestris, an invasive earthworm in Northern Michigan, is redistributing nitrogen from the organic soil layer to the deeper, mineral soil layer. L. terrestris burrow 2 meters vertically into the ground and emerge to feed on freshly fallen leaf litter. The study included collecting of L. terrestris in 16 0.5 m square plots by method of electro-shock. Soil cores from a depth of 0-5 and 30-40 cm as well as leaf litter were taken from each plot to determine nitrogen content and nitrogen isotope ratios. Data analysis resulted in no significance between plots with earthworms and without earthworms in both nitrogen, N, isotope ratios and N content. Plots with L. terrestris showed no difference between the organic and mineral soil layer. This result suggests that L. terrestris are homogenizing soil layers. However, smaller than ideal sample sizes limit interpretive capacity of the results. Further research needs to be completed to confirm these perceived trends. The analysis of nitrogen isotope ratios suggest that there is another source of 15N other than leaf litter and L. terrestris that is contributing to soil composition and therefore the contribution of each was not conclusively determined. Introduction Invasion of an exotic species into an ecosystem is one of the leading threats to biologically diverse ecosystems throughout the world. Exotic species are initially introduced as a solution for food, farming, aesthetic purposes, or even accidentally. -
A Case Study of the Exotic Peregrine Earthworm Morphospecies Pontoscolex Corethrurus Shabnam Taheri, Céline Pelosi, Lise Dupont
Harmful or useful? A case study of the exotic peregrine earthworm morphospecies Pontoscolex corethrurus Shabnam Taheri, Céline Pelosi, Lise Dupont To cite this version: Shabnam Taheri, Céline Pelosi, Lise Dupont. Harmful or useful? A case study of the exotic peregrine earthworm morphospecies Pontoscolex corethrurus. Soil Biology and Biochemistry, Elsevier, 2018, 116, pp.277-289. 10.1016/j.soilbio.2017.10.030. hal-01628085 HAL Id: hal-01628085 https://hal.archives-ouvertes.fr/hal-01628085 Submitted on 5 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Harmful or useful? A case study of the exotic peregrine earthworm MARK morphospecies Pontoscolex corethrurus ∗ ∗∗ S. Taheria, , C. Pelosib, L. Duponta, a Université Paris Est Créteil, Université Pierre et Marie Curie, CNRS, INRA, IRD, Université Paris-Diderot, Institut d’écologie et des Sciences de l'environnement de Paris (iEES-Paris), Créteil, France b UMR ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, 78026 Versailles, France ABSTRACT Exotic peregrine earthworms are often considered to cause environmental harm and to have a negative impact on native species, but, as ecosystem engineers, they enhance soil physical properties. Pontoscolex corethrurus is by far the most studied morphospecies and is also the most widespread in tropical areas. -
Study of Phylogenetic Tree and Morphology of Aporrectodea Based on Mitochondrial Marker (16S Rrna Gene) in Some Area South of Baghdad/ Iraq
Iraqi Journal of Biotechnology, 2015, Vol. 14, No. 2 , 47-54 Study of Phylogenetic Tree and Morphology of Aporrectodea Based on Mitochondrial Marker (16S rRNA gene) in Some Area South of Baghdad/ Iraq Najwa Sh. Ahmed1, Nebrass Faleh Chacain2, Falih Hamzah Edan3,Saad M. Nada1, Anas Noori Ibraheem1 1Biotechnology Research Center, AL-Nahrain University, Baghdad 2 Biology dep., College of Science, AL-Mustansiriyah University 3 Research and Development Directorate Received: April 19, 2015 / Accepted: October 11, 2015 Abstract: This study aimed to show the phylogenetic structure of Aporrectodea genus in order to verify its cladistics nature and its taxonomic validity. In this work, collection of Aporrectodea genus from three locations from South of Baghdad, (AL-Karrada, AL-Zafranya and New Baghdad) are studied. First, we used usual morphological characteristics to identify each species than molecular phylogenetic analyses are based on the sequences of mitochondrial 16S rRNA gene regions and used software MEGA6 and Raptorx software. Rresults of the two methods (MEGA 6 and Raptorx software) were cluster groups (organisms of 8 sample from Group1A and Group3) in one group and with distance equal to 0.006, clustering of group 2 as a single group, and reached the highest value between group 2 and group 1(B) with distance equal to 0.272 and to move away genetic traits, Raptorx software, conformation of protein for 16SrRNA appeared as a result of the similarity of Mega6. The marker mitochondrial 16S rRNA gene is a powerful tool for identifying species of earthworms and provides a useful complement to traditional morphological taxonomy. Key words: 16S rRNA, Aporrectodea, Raptorx software. -
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of • Stefano Bocchi and Francesca Orlando Agricultural Practices on Biodiversity of Soil Invertebrates Edited by Stefano Bocchi and Francesca Orlando Printed Edition of the Special Issue Published in Agronomy www.mdpi.com/journal/agronomy Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Editors Stefano Bocchi Francesca Orlando MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editors Stefano Bocchi Francesca Orlando University of Milan University of Milan Italy Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Agronomy (ISSN 2073-4395) (available at: https://www.mdpi.com/journal/agronomy/special issues/Soil Invertebrates). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Volume Number, Page Range. ISBN 978-3-03943-719-1 (Hbk) ISBN 978-3-03943-720-7 (PDF) Cover image courtesy of Valentina Vaglia. c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. -
Scaling of the Hydrostatic Skeleton in the Earthworm Lumbricus Terrestris
© 2014. Published by The Company of Biologists Ltd | The Journal of Experimental Biology (2014) 217, 1860-1867 doi:10.1242/jeb.098137 RESEARCH ARTICLE Scaling of the hydrostatic skeleton in the earthworm Lumbricus terrestris Jessica A. Kurth* and William M. Kier ABSTRACT Many soft-bodied organisms or parts of organisms (e.g. terrestrial The structural and functional consequences of changes in size or and marine worms, cnidarians, echinoderms, bivalves, gastropods scale have been well studied in animals with rigid skeletons, but and nematodes) possess a hydrostatic skeleton. Hydrostatic relatively little is known about scale effects in animals with hydrostatic skeletons are characterized by a liquid-filled internal cavity skeletons. We used glycol methacrylate histology and microscopy to surrounded by a muscular body wall (Kier, 2012). Because liquids examine the scaling of mechanically important morphological features resist changes in volume, muscular contraction does not of the earthworm Lumbricus terrestris over an ontogenetic size range significantly compress the fluid, and the resulting increase in internal from 0.03 to 12.89 g. We found that L. terrestris becomes pressure allows for support, muscular antagonism, mechanical disproportionately longer and thinner as it grows. This increase in the amplification and force transmission (Chapman, 1950; Chapman, length to diameter ratio with size means that, when normalized for 1958; Alexander, 1995; Kier, 2012). mass, adult worms gain ~117% mechanical advantage during radial Animals supported by hydrostatic skeletons range in size from a expansion, compared with hatchling worms. We also found that the few millimeters (e.g. nematodes) to several meters in length (e.g. cross-sectional area of the longitudinal musculature scales as body earthworms), yet little is known about scale effects on their form and mass to the ~0.6 power across segments, which is significantly lower function. -
Size Variation and Geographical Distribution of the Luminous Earthworm Pontodrilus Litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan
A peer-reviewed open-access journal ZooKeys 862: 23–43 (2019) Size variation and distribution of Pontodrilus litoralis 23 doi: 10.3897/zookeys.862.35727 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Size variation and geographical distribution of the luminous earthworm Pontodrilus litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan Teerapong Seesamut1,2,4, Parin Jirapatrasilp2, Ratmanee Chanabun3, Yuichi Oba4, Somsak Panha2 1 Biological Sciences Program, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand 2 Ani- mal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand 3 Program in Animal Science, Faculty of Agriculture Technology, Sakon Nakhon Rajabhat University, Sakon Nakhon 47000, Thailand 4 Department of Environmental Biology, Chubu University, Kasugai 487-8501, Japan Corresponding authors: Somsak Panha ([email protected]), Yuichi Oba ([email protected]) Academic editor: Samuel James | Received 24 April 2019 | Accepted 13 June 2019 | Published 9 July 2019 http://zoobank.org/663444CA-70E2-4533-895A-BF0698461CDF Citation: Seesamut T, Jirapatrasilp P, Chanabun R, Oba Y, Panha S (2019) Size variation and geographical distribution of the luminous earthworm Pontodrilus litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan. ZooKeys 862: 23–42. https://doi.org/10.3897/zookeys.862.35727 Abstract The luminous earthworm Pontodrilus litoralis (Grube, 1855) occurs in a very wide range of subtropical and tropical coastal areas. Morphometrics on size variation (number of segments, body length and diameter) and genetic analysis using the mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequence were conducted on 14 populations of P. -
Appendix 5.3 MON 810 Literature Review – List of All Hits (June 2016
Appendix 5.3 MON 810 literature review – List of all hits (June 2016-May 2017) -Web of ScienceTM Core Collection database 12/8/2016 Web of Science [v.5.23] Export Transfer Service Web of Science™ Page 1 (Records 1 50) [ 1 ] Record 1 of 50 Title: Ground beetle acquisition of Cry1Ab from plant and residuebased food webs Author(s): Andow, DA (Andow, D. A.); Zwahlen, C (Zwahlen, C.) Source: BIOLOGICAL CONTROL Volume: 103 Pages: 204209 DOI: 10.1016/j.biocontrol.2016.09.009 Published: DEC 2016 Abstract: Ground beetles are significant predators in agricultural habitats. While many studies have characterized effects of Bt maize on various carabid species, few have examined the potential acquisition of Cry toxins from live plants versus plant residue. In this study, we examined how live Bt maize and Bt maize residue affect acquisition of Cry1Ab in six species. Adult beetles were collected live from fields with either currentyear Bt maize, oneyearold Bt maize residue, twoyearold Bt maize residue, or fields without any Bt crops or residue for the past two years, and specimens were analyzed using ELISA. Observed Cry1Ab concentrations in the beetles were similar to that reported in previously published studies. Only one specimen of Cyclotrachelus iowensis acquired Cry1Ab from twoyearold maize residue. Three species acquired Cry1Ab from fields with either live plants or plant residue (Cyclotrachelus iowensis, Poecilus lucublandus, Poecilus chalcites), implying participation in both liveplant and residuebased food webs. Two species acquired toxin from fields with live plants, but not from fields with residue (Bembidion quadrimaculatum, Elaphropus incurvus), suggesting participation only in live plantbased food webs. -
French Mediterranean Islands As a Refuge of Relic Earthworm Species: Cataladrilus Porquerollensis Sp
European Journal of Taxonomy 701: 1–22 ISSN 2118-9773 https://doi.org/10.5852/ejt.2020.701 www.europeanjournaloftaxonomy.eu 2020 · Marchán D.F. et al. This work is licensed under a Creative Commons Attribution License (CC BY 4.0). Research article urn:lsid:zoobank.org:pub:D9291955-F619-46EA-90E1-DA756D1B7C55 French Mediterranean islands as a refuge of relic earthworm species: Cataladrilus porquerollensis sp. nov. and Scherotheca portcrosana sp. nov. (Crassiclitellata, Lumbricidae) Daniel F. MARCHÁN 1,3,*, Thibaud DECAËNS 2,*, Darío J. DÍAZ COSÍN 3, Mickaël HEDDE 4, Emmanuel LAPIED 5 & Jorge DOMÍNGUEZ 6 1,6 Grupo de Ecoloxía Animal (GEA), Universidade de Vigo, E-36310 Vigo, Spain. 2 CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France. 3 Department of Biodiversity, Ecology and Evolution, Faculty of Biology, Universidad Complutense de Madrid, Madrid, Spain. 4 UMR Eco&Sols, INRAE–IRD–CIRAD–SupAgro Montpellier, 2 Place Viala, 34060 Montpellier Cedex 2, France. 5 Taxonomia Biodiversity Fund, 7 rue Beccaria, 72012, Paris, France. * Corresponding authors: [email protected]; [email protected] 3 Email: [email protected] 4 Email: [email protected] 5 Email: [email protected] 6 Email: [email protected] 1 urn:lsid:zoobank.org:author:3B3731B6-B5FB-409A-A7A3-99FD0F96D688 2 urn:lsid:zoobank.org:author:B61F61B2-3012-4526-8FF9-DC94D372AF77 3 urn:lsid:zoobank.org:author:38538B17-F127-4438-9DE2-F9D6C597D044 4 urn:lsid:zoobank.org:author:F4A219F7-7E75-4333-8293-3004B3CD62C5 5 urn:lsid:zoobank.org:author:B1FB8658-DFC3-481C-A0BE-B8488A018611 6 urn:lsid:zoobank.org:author:167575D5-D2CC-4B37-8B1D-0233E6B154E5 Abstract. -
Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 Departamento de Zoología y Antropología Física, Facultad de Biología, Universidad Complutense de Madrid, C/ José Antonio Nováis 2, 28040, Madrid, Spain 2 Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10, 3TL, UK3 Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA † http://zoobank.org/38538B17-F127-4438-9DE2-F9D6C597D044 ‡ http://zoobank.org/79DA5419-91D5-4EAB-BC72-1E46F10C716A § http://zoobank.org/99618966-BB50-4A01-8FA0-7B1CC31686B6 | http://zoobank.org/CAB83B57-ABD1-40D9-B16A-654281D71D58 ¶ http://zoobank.org/E1A7E77A-9CD5-4D67-88A3-C7F65AD6A5BE Corresponding author: Darío J. Díaz Cosín ([email protected]) Academic editor: R. Blakemore | Received 17 February 2014 | Accepted 25 March 2014 | Published 9 April 2014 http://zoobank.org/F5AC3116-E79E-4442-9B26-2765A5243D5E Citation: Cosín DJD, Novo M, Fernández R, Marchán DF, Gutiérrez M (2014) A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data. ZooKeys 399: 71–87. doi: 10.3897/zookeys.399.7273 Abstract The morphological and anatomical simplicity of soil dwelling animals, such as earthworms, has limited the establishment of a robust taxonomy making it sometimes subjective to authors’ criteria. -
(Title of the Thesis)*
Rethinking restoration ecology of tallgrass prairie: considering belowground components of tallgrass restoration in southern Ontario by Heather Anne Cray A thesis presented to the University of Waterloo in fulfillment of the thesis requirement for the degree of Doctor of Philosophy in Social and Ecological Sustainability Waterloo, Ontario, Canada, 2019 ©Heather Anne Cray 2019 Examining Committee Membership The following served on the Examining Committee for this thesis. The decision of the Examining Committee is by majority vote. External Examiner Dr. Andrew MacDougall Associate Professor, Guelph University Supervisor(s) Dr. Stephen Murphy Professor & Director, University of Waterloo Internal Member Dr. Andrew Trant Assistant Professor, University of Waterloo Internal-external Member Dr. Rebecca Rooney Assistant Professor, University of Waterloo Other Member(s) Dr. Greg Thorn Associate Professor, Western University ii Author's Declaration This thesis consists of material all of which I authored or co-authored: see Statement of Contributions included in the thesis. This is a true copy of the thesis, including any required final revisions, as accepted by my examiners. I understand that my thesis may be made electronically available to the public. iii Statement of Contributions This thesis contains five chapters that are collaborative efforts of multiple researchers that will be submitted into peer-reviewed journals. Heather Cray is first author on all contributing papers and therefore was responsible for the development, data collection, data analysis and preparation of each of the manuscripts found in this dissertation. The written portions of all manuscripts, including figures and tables, were completed in their entirety by Heather Cray and edited for content and composition by thesis supervisor Dr.